Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g17980 Coffea canephora HOM05D007911 ORTHO05D009536 0.0e+00 1117.1 716 100.0
Nn2g15134 Nelumbo nucifera HOM05D007911 ORTHO05D009536 1.2e-18 99.4 133 41.4
QL07p003623 Quercus lobata HOM05D007911 ORTHO05D009536 1.0e-17 96.3 98 48.0
Nitab4.5_0000826g0230 Nicotiana tabacum HOM05D017238 ORTHO05D009536 5.1e-17 94.0 109 41.3
Nitab4.5_0001618g0290 Nicotiana tabacum HOM05D017238 ORTHO05D009536 5.1e-17 94.0 109 41.3
Thecc.05G151800 Theobroma cacao HOM05D007911 ORTHO05D009536 5.1e-17 94.0 108 44.4
Rhsim03G0028700 Rhododendron simsii HOM05D007911 ORTHO05D009536 4.3e-16 90.9 112 42.9
Duzib093G1996 Durio zibethinus HOM05D007911 ORTHO05D009536 5.6e-16 90.5 95 45.3
Peaxi162Scf00130g00827 Petunia axillaris HOM05D017238 ORTHO05D009536 1.3e-15 89.4 94 48.9
Actinidia39204 Actinidia chinensis HOM05D007911 ORTHO05D009536 1.6e-15 89.0 113 43.4
COL.COLO4_33204 Corchorus olitorius HOM05D007911 ORTHO05D009536 2.8e-15 88.2 128 41.4
CiPaw.09G040100 Carya illinoinensis HOM05D007911 ORTHO05D009536 3.7e-15 87.8 97 43.3
Atru.chr12.1999 Acer truncatum HOM05D007911 ORTHO05D009536 6.2e-15 87.0 96 44.8
CSS0030068 Camellia sinensis var. sinensis HOM05D007911 ORTHO05D009536 6.2e-15 87.0 119 42.9
Prupe.7G054000 Prunus persica HOM05D007911 ORTHO05D009536 1.1e-14 86.3 119 40.3
Atru.chr1.1239 Acer truncatum HOM05D007911 ORTHO05D009536 1.4e-14 85.9 96 44.8
Oeu035501.1 Olea europaea HOM05D007911 ORTHO05D009536 1.4e-14 85.9 109 40.4
Gohir.D01G119650 Gossypium hirsutum HOM05D007911 ORTHO05D009536 1.8e-14 85.5 108 41.7
Gorai.002G146100 Gossypium raimondii HOM05D007911 ORTHO05D009536 1.8e-14 85.5 108 41.7
TAR636G2018 Trochodendron aralioides HOM05D007911 ORTHO05D009536 1.8e-14 85.5 133 40.6
Gohir.A01G130811 Gossypium hirsutum HOM05D007911 ORTHO05D009536 3.1e-14 84.7 108 41.7
Solyc04g016290.3 Solanum lycopersicum HOM05D017238 ORTHO05D009536 3.1e-14 84.7 109 38.5
TWI53G0905 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 3.1e-14 84.7 106 44.3
Hma1.2p1_0005F.1_g004500 Hydrangea macrophylla HOM05D007911 ORTHO05D009536 4.0e-14 84.3 126 38.9
Manes.08G052400 Manihot esculenta HOM05D007911 ORTHO05D009536 5.3e-14 84.0 111 43.2
Haze_19798 Corylus avellana HOM05D007911 ORTHO05D009536 9.0e-14 83.2 77 55.8
Actinidia09304 Actinidia chinensis HOM05D007911 ORTHO05D009536 2.6e-13 81.6 128 39.8
Potri.016G043300 Populus trichocarpa HOM05D007911 ORTHO05D009536 2.6e-13 81.6 110 42.7
SGA_v2.0_scaffold105G30375 Striga asiatica HOM05D007911 ORTHO05D009536 3.4e-13 81.3 114 40.4
Cfa016782 Carpinus fangiana HOM05D007911 ORTHO05D009536 4.5e-13 80.9 77 53.2
CANSAT80G1261 Cannabis sativa HOM05D007911 ORTHO05D009536 5.8e-13 80.5 130 36.9
CANSAT80G2434 Cannabis sativa HOM05D007911 ORTHO05D009536 5.8e-13 80.5 130 36.9
Sopen04g008390 Solanum pennellii HOM05D017238 ORTHO05D009536 5.8e-13 80.5 109 37.6
vmacro21970 Vaccinium macrocarpon HOM05D007911 ORTHO05D009536 5.8e-13 80.5 96 42.7
Psat3g074440 Pisum sativum HOM05D007911 ORTHO05D009536 7.6e-13 80.1 136 36.8
arahy.Tifrunner.gnm1.ann1.18RKPD Arachis hypogaea HOM05D007911 ORTHO05D009536 9.9e-13 79.7 124 39.5
arahy.Tifrunner.gnm1.ann1.BL1IZ1 Arachis hypogaea HOM05D007911 ORTHO05D009536 9.9e-13 79.7 124 39.5
CAN.G676.9 Capsicum annuum HOM05D017238 ORTHO05D009536 1.3e-12 79.3 77 50.6
Lj1g0009156 Lotus japonicus HOM05D007911 ORTHO05D009536 1.3e-12 79.3 114 39.5
Phvul.001G129400 Phaseolus vulgaris HOM05D007911 ORTHO05D009536 2.2e-12 78.6 109 42.2
MSTRG.6410 Avicennia marina HOM05D007911 ORTHO05D009536 3.8e-12 77.8 88 43.2
Ca_08429_v3 Cicer arietinum L. HOM05D007911 ORTHO05D009536 4.9e-12 77.4 128 36.7
Ciclev10006879m.g Citrus clementina HOM05D007911 ORTHO05D009536 4.9e-12 77.4 85 45.9
Eucgr.A02312 Eucalyptus grandis HOM05D007911 ORTHO05D009536 4.9e-12 77.4 130 33.8
Sabra06G0032200 Salix brachista HOM05D007911 ORTHO05D009536 4.9e-12 77.4 110 42.7
Cpa.g.sc1210.2 Carica papaya HOM05D007911 ORTHO05D009536 1.1e-11 76.3 73 47.9
RcHm_v2.0_Chr3g0483481 Rosa chinensis HOM05D020102 ORTHO05D009536 1.1e-11 76.3 126 38.1
Lalb_Chr25g0287291 Lupinus albus HOM05D007911 ORTHO05D009536 2.4e-11 75.1 107 44.9
VMungo1383G2470 Vigna mungo HOM05D007911 ORTHO05D009536 2.4e-11 75.1 119 39.5
Glyma.03G133900 Glycine max HOM05D007911 ORTHO05D009536 4.2e-11 74.3 93 43.0
FvH4_6g24470 Fragaria vesca HOM05D020102 ORTHO05D009536 9.3e-11 73.2 126 34.9
SalBow6G1456 Salvia bowleyana HOM05D007911 ORTHO05D009536 1.2e-10 72.8 112 36.6
MELO3C026340.2 Cucumis melo HOM05D007911 ORTHO05D009536 1.6e-10 72.4 125 36.0
Duzib106G0073 Durio zibethinus HOM05D007911 ORTHO05D009536 1.6e-10 72.4 108 38.0
ClCG04G003660 Citrullus lanatus HOM05D007911 ORTHO05D009536 2.1e-10 72.0 136 36.0
VMungo0720G0307 Vigna mungo HOM05D007911 ORTHO05D009536 2.1e-10 72.0 93 41.9
Glyma.19G136200 Glycine max HOM05D007911 ORTHO05D009536 2.7e-10 71.6 94 41.5
TPR.G18258 Trifolium pratense HOM05D007911 ORTHO05D009536 3.5e-10 71.2 85 42.4
FAN09G4584 Fragaria x ananassa HOM05D020102 ORTHO05D009536 4.6e-10 70.9 126 34.9
Potri.006G046700 Populus trichocarpa HOM05D007911 ORTHO05D009536 4.6e-10 70.9 109 42.2
Lalb_Chr01g0017411 Lupinus albus HOM05D007911 ORTHO05D009536 6.0e-10 70.5 97 44.3
Medtr7g091040 Medicago truncatula HOM05D007911 ORTHO05D009536 6.0e-10 70.5 104 37.5
SalBow6G0990 Salvia bowleyana HOM05D007911 ORTHO05D009536 6.0e-10 70.5 112 35.7
FAN14G4000 Fragaria x ananassa HOM05D020102 ORTHO05D009536 7.9e-10 70.1 126 34.1
TWI77G0280 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 7.9e-10 70.1 74 48.6
PGR004G0024 Punica granatum HOM05D007911 ORTHO05D009536 1.8e-09 68.9 107 39.3
SGA_v2.0_scaffold69G23124 Striga asiatica HOM05D007911 ORTHO05D009536 1.8e-09 68.9 91 41.8
arahy.Tifrunner.gnm1.ann1.XA9LH2 Arachis hypogaea HOM05D007911 ORTHO05D009536 1.5e-08 65.9 94 41.5
PSO339G2888 Papaver somniferum HOM05D007911 ORTHO05D009536 1.5e-08 65.9 77 45.5
AUR62026093 Chenopodium quinoa HOM05D021336 ORTHO05D009536 4.3e-08 64.3 105 34.3
Lsat_1_v5_gn_9_31060 Lactuca sativa HOM05D007911 ORTHO05D009536 6.2e-07 60.5 104 40.4
Sopen10g030520 Solanum pennellii HOM05D029882 ORTHO05D037717 6.2e-07 60.5 82 41.5
Hund19135 Selenicereus undatus HOM05D021336 ORTHO05D009536 8.2e-07 60.1 79 41.8
EL10Ac3g07134 Beta vulgaris HOM05D021336 ORTHO05D009536 2.4e-06 58.5 112 35.7
Nitab4.5_0000677g0260 Nicotiana tabacum HOM05D029882 ORTHO05D009536 4.0e-06 57.8 104 38.5
FAN05G5247 Fragaria x ananassa HOM05D020102 ORTHO05D009536 5.3e-06 57.4 95 34.7
PSO384G4398 Papaver somniferum HOM05D007911 ORTHO05D009536 9.0e-06 56.6 77 42.9


User provided reference genes

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