Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g17640 Coffea canephora HOM05D006503 ORTHO05D008116 9.9e-227 790.8 809 100.0
Lju124C42T22 Lonicera japonica HOM05D006503 ORTHO05D008116 3.8e-101 373.6 767 76.1
MSTRG.6424 Avicennia marina HOM05D006503 ORTHO05D008116 2.1e-99 367.9 791 73.7
CAN.G1274.14 Capsicum annuum HOM05D006503 ORTHO05D008116 1.5e-97 361.7 791 74.2
Oeu016352.1 Olea europaea HOM05D006503 ORTHO05D008116 8.4e-93 345.9 775 74.7
Hma1.2p1_1041F.1_g251090 Hydrangea macrophylla HOM05D006503 ORTHO05D008116 3.2e-92 344.0 757 70.5
Migut.J01751 Erythranthe guttata HOM05D006503 ORTHO05D008116 2.3e-90 337.8 775 72.5
PGSC0003DMG401003570 Solanum tuberosum HOM05D006503 ORTHO05D008116 2.3e-90 337.8 759 75.0
Sopen02g028560 Solanum pennellii HOM05D006503 ORTHO05D008116 1.4e-87 328.6 759 74.3
Cfa017777 Carpinus fangiana HOM05D006503 ORTHO05D008116 4.9e-85 320.1 771 73.4
Nitab4.5_0002332g0010 Nicotiana tabacum HOM05D006503 ORTHO05D008116 4.9e-85 320.1 713 78.1
QL04p096113 Quercus lobata HOM05D006503 ORTHO05D008116 1.9e-84 318.2 791 71.3
Thecc.09G181100 Theobroma cacao HOM05D006503 ORTHO05D008116 7.1e-84 316.2 808 69.9
QL04p096294 Quercus lobata HOM05D006503 ORTHO05D008116 9.3e-84 315.8 791 72.1
SalBow6G5105 Salvia bowleyana HOM05D006503 ORTHO05D008116 4.6e-83 313.5 785 68.5
Atru.BG.180.p Acer truncatum HOM05D006503 ORTHO05D008116 1.0e-82 312.4 759 57.6
CSS0000010 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 1.0e-82 312.4 801 71.5
MD05G1241300 Malus domestica HOM05D006503 ORTHO05D008116 1.3e-82 312.0 773 69.6
Peaxi162Scf00020g00194 Petunia axillaris HOM05D006503 ORTHO05D008116 1.9e-81 308.1 688 79.8
Duzib150G0906 Durio zibethinus HOM05D006503 ORTHO05D008116 1.8e-79 301.6 791 71.4
Prupe.4G124200 Prunus persica HOM05D006503 ORTHO05D008116 2.4e-79 301.2 773 73.4
TWI77G0486 Tripterygium wilfordii HOM05D006503 ORTHO05D008116 3.1e-79 300.8 765 72.2
Ciclev10004347m.g Citrus clementina HOM05D006503 ORTHO05D008116 1.1e-76 292.4 785 71.6
COL.COLO4_08106 Corchorus olitorius HOM05D006503 ORTHO05D008116 1.9e-76 291.6 730 74.1
ClCG02G018860 Citrullus lanatus HOM05D006503 ORTHO05D008116 4.2e-76 290.4 764 71.2
Solyc02g083780.3 Solanum lycopersicum HOM05D002880 ORTHO05D008116 7.1e-76 289.7 732 74.3
Manes.09G020600 Manihot esculenta HOM05D006503 ORTHO05D008116 1.8e-74 285.0 772 72.5
CiPaw.15G110400 Carya illinoinensis HOM05D006503 ORTHO05D008116 3.9e-74 283.9 780 61.0
HanXRQChr13g0395951 Helianthus annuus HOM05D006503 ORTHO05D008116 5.1e-74 283.5 780 70.5
RcHm_v2.0_Chr5g0022901 Rosa chinensis HOM05D006503 ORTHO05D008116 6.7e-74 283.1 742 72.9
ECA248G2018 Erigeron canadensis HOM05D006503 ORTHO05D008116 8.7e-74 282.7 752 72.2
Sed0013522 Sechium edule HOM05D006503 ORTHO05D008116 1.8e-71 275.0 770 68.4
CANSAT21G0513 Cannabis sativa HOM05D006503 ORTHO05D008116 4.1e-71 273.9 788 70.2
SGA_v2.0_scaffold10G05267 Striga asiatica HOM05D006503 ORTHO05D008116 2.0e-70 271.6 727 72.6
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 3.4e-70 270.8 776 71.0
Rhsim04G0102600 Rhododendron simsii HOM05D006503 ORTHO05D008116 1.3e-69 268.9 773 71.2
Dinv36159 Davidia involucrata HOM05D006503 ORTHO05D008116 2.9e-69 267.7 710 76.3
SalBow6G4098 Salvia bowleyana HOM05D006503 ORTHO05D008116 7.2e-68 263.1 785 66.5
Lsat_1_v5_gn_5_161280 Lactuca sativa HOM05D006503 ORTHO05D008116 9.4e-68 262.7 771 62.1
Lalb_Chr13g0292411 Lupinus albus HOM05D006503 ORTHO05D008116 2.8e-64 251.1 313 57.8
AT1G79540 Arabidopsis thaliana HOM05D006503 ORTHO05D008116 2.4e-63 248.1 776 59.8
C02p36700 Brassica napus HOM05D006503 ORTHO05D008116 2.4e-63 248.1 774 61.0
AL2G40180 Arabidopsis lyrata HOM05D006503 ORTHO05D008116 1.5e-62 245.4 776 59.7
BcaC03g15903 Brassica carinata HOM05D006503 ORTHO05D008116 7.7e-62 243.0 772 60.8
BolC2t09665H Brassica oleracea HOM05D006503 ORTHO05D008116 7.7e-62 243.0 772 60.8
Aqoxy2G03029 Aquilegia oxysepala HOM05D006503 ORTHO05D008116 1.0e-61 242.7 765 69.8
THA.LOC104808133 Tarenaya hassleriana HOM05D006503 ORTHO05D008116 1.7e-61 241.9 793 59.8
Sp5g34600 Schrenkiella parvula HOM05D006503 ORTHO05D008116 6.5e-61 240.0 784 61.5
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 8.5e-61 239.6 781 60.1
BraA02t07289Z Brassica rapa HOM05D006503 ORTHO05D008116 1.9e-60 238.4 765 60.8
CARHR036700 Cardamine hirsuta HOM05D006503 ORTHO05D008116 3.2e-60 237.7 770 61.6
A02p22890 Brassica napus HOM05D006503 ORTHO05D008116 4.2e-60 237.3 765 60.7
CsaV3_6G013320 Cucumis sativus L. HOM05D006503 ORTHO05D008116 4.2e-60 237.3 771 68.6
Actinidia38544 Actinidia chinensis HOM05D006503 ORTHO05D008116 9.4e-60 236.1 333 60.4
BcaB05g25205 Brassica carinata HOM05D006503 ORTHO05D008116 1.2e-59 235.7 797 60.1
Sc13g0001660 Simmondsia chinensis HOM05D006503 ORTHO05D008116 1.2e-59 235.7 758 70.3
Thhalv10018150m.g Eutrema salsugineum HOM05D006503 ORTHO05D008116 3.6e-59 234.2 780 60.5
TAR633G2474 Trochodendron aralioides HOM05D006503 ORTHO05D008116 1.0e-58 232.6 786 69.1
arahy.Tifrunner.gnm1.ann1.97ANKK Arachis hypogaea HOM05D006503 ORTHO05D008116 5.1e-58 230.3 324 57.4
arahy.Tifrunner.gnm1.ann1.ER6M1I Arachis hypogaea HOM05D006503 ORTHO05D008116 6.7e-58 229.9 326 54.9
arahy.Tifrunner.gnm1.ann1.YC2S1L Arachis hypogaea HOM05D006503 ORTHO05D008116 6.7e-58 229.9 326 54.9
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 1.7e-56 225.3 306 56.9
FvH4_3g13661 Fragaria vesca HOM05D006503 ORTHO05D008116 1.7e-56 225.3 726 68.6
arahy.Tifrunner.gnm1.ann1.RL700P Arachis hypogaea HOM05D006503 ORTHO05D008116 3.7e-56 224.2 306 59.5
Psat5g067680 Pisum sativum HOM05D006503 ORTHO05D008116 3.7e-56 224.2 325 57.8
MELO3C019605.2 Cucumis melo HOM05D006503 ORTHO05D008116 6.3e-56 223.4 771 58.8
Nn5g26957 Nelumbo nucifera HOM05D006503 ORTHO05D008116 1.5e-54 218.8 764 70.2
arahy.Tifrunner.gnm1.ann1.KC4DMY Arachis hypogaea HOM05D006503 ORTHO05D008116 3.5e-54 217.6 306 57.8
SHI16040 Sapria himalayana HOM05D006503 ORTHO05D008116 3.5e-54 217.6 759 60.9
TAR633G2684 Trochodendron aralioides HOM05D000623 ORTHO05D008116 1.7e-53 215.3 683 76.6
Carub.0002s2640 Capsella rubella HOM05D006503 ORTHO05D008116 1.1e-52 212.6 777 58.4
AUR62038078 Chenopodium quinoa HOM05D006503 ORTHO05D008116 1.9e-52 211.8 760 66.1
vmacro09073 Vaccinium macrocarpon HOM05D006503 ORTHO05D008116 7.2e-52 209.9 246 71.5
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 6.1e-51 206.8 778 59.5
DCAR_022897 Daucus carota HOM05D006503 ORTHO05D008116 8.0e-51 206.5 749 69.4
VMungo1309G1456 Vigna mungo HOM05D006503 ORTHO05D008116 6.7e-50 203.4 306 50.7
GSVIVG01033259001 Vitis vinifera HOM05D006503 ORTHO05D008116 2.0e-49 201.8 777 56.2
Medtr5g018230 Medicago truncatula HOM05D006503 ORTHO05D008116 9.7e-49 199.5 326 45.4
Medtr5g039700 Medicago truncatula HOM05D006503 ORTHO05D008116 9.7e-49 199.5 326 45.4
Ca_06133_v3 Cicer arietinum L. HOM05D006503 ORTHO05D008116 2.2e-48 198.4 255 63.9
Glyma.06G144800 Glycine max HOM05D006503 ORTHO05D008116 9.1e-47 193.0 311 55.0
Nitab4.5_0000051g0090 Nicotiana tabacum HOM05D006503 ORTHO05D008116 3.5e-46 191.0 621 77.3
VMungo1127G1467 Vigna mungo HOM05D006503 ORTHO05D008116 1.9e-44 185.3 305 54.1
arahy.Tifrunner.gnm1.ann1.1KXV0X Arachis hypogaea HOM05D006503 ORTHO05D008116 1.4e-42 179.1 324 44.8
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 3.0e-42 177.9 311 50.5
ATR0561G112 Amborella trichopoda HOM05D006503 ORTHO05D008116 5.2e-42 177.2 771 60.2
CSS0042104 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 1.2e-41 176.0 192 51.0
Lj6g0025212 Lotus japonicus HOM05D006503 ORTHO05D008116 1.2e-41 176.0 306 55.6
Actinidia17234 Actinidia chinensis HOM05D006503 ORTHO05D008116 1.1e-39 169.5 170 50.6
Cpa.g.sc32.63 Carica papaya HOM05D006503 ORTHO05D008116 2.9e-37 161.4 189 45.5
arahy.Tifrunner.gnm1.ann1.J10LLE Arachis hypogaea HOM05D006503 ORTHO05D008116 3.8e-37 161.0 309 33.0
Os09g0110200 Oryza sativa ssp. japonica HOM05D006503 ORTHO05D008116 1.1e-36 159.5 317 52.4
HPP92_001414 Vanilla planifolia HOM05D006503 ORTHO05D008116 1.5e-36 159.1 319 51.7
HPP92_001421 Vanilla planifolia HOM05D006503 ORTHO05D008116 3.6e-35 154.5 318 50.9
Zm00001eb221750 Zea mays HOM05D006503 ORTHO05D008116 3.6e-35 154.5 318 52.2
Gohir.A05G408900 Gossypium hirsutum HOM05D006503 ORTHO05D008116 4.7e-35 154.1 188 43.6
TAR629G2271 Trochodendron aralioides HOM05D006503 ORTHO05D008116 1.4e-34 152.5 228 58.8
TPR.G16108 Trifolium pratense HOM05D006503 ORTHO05D008116 2.3e-34 151.8 306 36.6
Gohir.D04G006500 Gossypium hirsutum HOM05D006503 ORTHO05D008116 4.0e-34 151.0 168 45.2
Gorai.012G007700 Gossypium raimondii HOM05D006503 ORTHO05D008116 4.0e-34 151.0 168 45.2
TPR.G29649 Trifolium pratense HOM05D006503 ORTHO05D008116 1.5e-33 149.1 283 48.1
Ah.13g074010 Amaranthus hybridus HOM05D006503 ORTHO05D008116 1.3e-32 146.0 740 62.8
Eucgr.A02340 Eucalyptus grandis HOM05D006503 ORTHO05D008116 2.8e-32 144.8 800 48.0
PGR004G2741 Punica granatum HOM05D006503 ORTHO05D008116 9.1e-31 139.8 673 72.4
CDE05G1884 Ceratophyllum demersum HOM05D006503 ORTHO05D008116 6.6e-29 133.7 253 33.6
Hund03989 Selenicereus undatus HOM05D006503 ORTHO05D008116 1.8e-23 115.5 189 62.4
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 5.0e-21 107.5 212 42.9
ATR0177G061 Amborella trichopoda HOM05D006503 ORTHO05D008116 5.6e-20 104.0 65 80.0
Glyma.04G221000 Glycine max HOM05D006503 ORTHO05D008116 3.4e-17 94.7 66 65.2
SEGI_01901 Sequoiadendron giganteum HOM05D006503 ORTHO05D008116 8.3e-16 90.1 182 33.0
Phvul.009G141200 Phaseolus vulgaris HOM05D006503 ORTHO05D008116 2.0e-14 85.5 193 58.0
TPR.G11576 Trifolium pratense HOM05D006503 ORTHO05D008116 1.2e-11 76.3 70 50.0
QL06p034135 Quercus lobata HOM05D006503 ORTHO05D008116 6.4e-08 63.9 184 47.8
ATR0907G005 Amborella trichopoda HOM05D007661 ORTHO05D009671 3.2e-07 61.6 169 27.8
ATR0177G045 Amborella trichopoda HOM05D006503 ORTHO05D008116 4.1e-07 61.2 52 55.8
arahy.Tifrunner.gnm1.ann1.6F2C80 Arachis hypogaea HOM05D006503 ORTHO05D008116 2.1e-06 58.9 183 28.4
arahy.Tifrunner.gnm1.ann1.C3XHUQ Arachis hypogaea HOM05D006503 ORTHO05D008116 2.7e-06 58.5 73 42.5


User provided reference genes

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