Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 5.0e-236 820.8 450 100.0
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 1.6e-130 470.3 468 59.0
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 6.5e-127 458.4 468 58.3
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 2.5e-123 446.4 463 58.1
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 2.5e-123 446.4 473 59.4
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 3.3e-123 446.0 471 56.7
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 4.3e-115 419.1 465 56.3
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 9.7e-115 417.9 409 58.9
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 2.4e-113 413.3 465 54.2
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 2.9e-111 406.4 473 52.0
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 3.8e-111 406.0 478 52.5
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 1.9e-110 403.7 507 50.5
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 2.7e-109 399.8 486 51.2
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 2.7e-109 399.8 457 51.0
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 4.7e-109 399.1 475 52.0
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 6.1e-109 398.7 434 54.1
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 6.7e-108 395.2 454 56.2
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 2.6e-107 393.3 461 52.3
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 7.4e-107 391.7 491 51.3
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 7.4e-107 391.7 481 54.1
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 8.2e-106 388.3 485 49.9
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 1.1e-105 387.9 304 65.5
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.8e-105 387.1 481 49.9
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 1.8e-105 387.1 452 54.0
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 5.3e-105 385.6 484 52.1
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 2.0e-104 383.6 396 56.8
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 4.5e-104 382.5 458 52.0
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 5.9e-104 382.1 482 49.8
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 1.7e-103 380.6 481 49.9
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 2.9e-103 379.8 494 51.2
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 2.9e-103 379.8 438 55.5
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.4e-102 377.5 397 57.2
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 2.1e-101 373.6 472 50.4
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.0e-100 369.8 398 56.3
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 3.9e-100 369.4 398 56.3
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 5.2e-100 369.0 495 49.7
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 8.8e-100 368.2 383 56.9
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 2.6e-99 366.7 473 49.7
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 3.3e-99 366.3 494 51.2
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 4.4e-99 365.9 314 64.6
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 5.7e-99 365.5 487 49.5
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.2e-98 363.6 492 51.0
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 2.2e-98 363.6 384 55.2
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 3.7e-98 362.8 500 46.6
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 8.2e-98 361.7 478 51.5
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.8e-97 360.5 475 47.6
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 5.3e-97 359.0 496 50.0
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 7.0e-97 358.6 493 49.5
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 7.0e-97 358.6 401 52.9
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 9.1e-97 358.2 453 47.7
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.2e-96 357.8 498 49.6
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.2e-96 357.8 496 49.8
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 1.6e-96 357.5 490 50.4
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 1.0e-95 354.8 442 47.5
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 1.3e-95 354.4 459 49.5
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 8.5e-95 351.7 462 48.7
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 1.1e-94 351.3 469 49.3
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 3.2e-94 349.7 456 46.7
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 4.2e-94 349.4 460 51.7
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 7.2e-94 348.6 295 63.1
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 2.7e-93 346.7 471 47.6
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.8e-92 344.0 457 46.8
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.3e-92 343.6 455 47.7
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 2.0e-91 340.5 426 49.3
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.6e-91 340.1 295 61.0
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 3.4e-91 339.7 424 47.4
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 2.2e-90 337.0 464 46.1
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 2.8e-90 336.7 463 47.5
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 4.8e-90 335.9 448 47.3
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 6.3e-90 335.5 304 59.9
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 7.0e-89 332.0 383 51.4
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 1.2e-88 331.3 400 50.2
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.0e-88 330.5 289 60.9
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 4.5e-88 329.3 405 49.4
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 5.9e-88 328.9 411 48.2
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.7e-87 327.4 426 46.5
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 5.0e-87 325.9 306 57.8
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.9e-86 323.9 464 45.0
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 9.4e-86 321.6 305 57.4
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 4.7e-85 319.3 464 45.5
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 2.3e-84 317.0 463 45.6
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 3.0e-84 316.6 386 49.0
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 1.2e-83 314.7 482 47.5
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 3.4e-83 313.2 301 57.1
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 5.7e-83 312.4 284 59.9
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 1.7e-82 310.8 396 49.7
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 2.2e-82 310.5 388 49.2
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 4.8e-82 309.3 392 50.0
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 4.8e-82 309.3 293 56.3
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 1.4e-81 307.8 472 46.0
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 3.1e-81 306.6 460 44.6
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 3.1e-81 306.6 460 44.6
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 3.1e-81 306.6 460 44.6
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 2.0e-80 303.9 457 45.5
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 3.5e-80 303.1 395 47.6
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 1.7e-79 300.8 399 46.6
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 8.6e-79 298.5 441 43.5
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 4.2e-78 296.2 388 48.2
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 7.2e-78 295.4 377 49.6
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 1.2e-77 294.7 402 46.8
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 1.6e-77 294.3 375 47.2
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 1.6e-77 294.3 460 43.7
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 1.6e-77 294.3 460 43.7
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 1.6e-77 294.3 460 43.7
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 2.8e-77 293.5 377 48.3
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 1.4e-76 291.2 449 44.3
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 5.2e-76 289.3 455 43.1
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 2.0e-75 287.3 379 48.5
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 2.0e-75 287.3 472 39.8
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 4.9e-74 282.7 382 48.2
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 1.2e-72 278.1 449 42.8
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 1.2e-72 278.1 398 45.7
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 2.0e-72 277.3 459 42.9
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 2.0e-72 277.3 459 42.9
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 4.5e-72 276.2 468 45.3
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 6.6e-71 272.3 441 41.7
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 6.6e-71 272.3 352 48.0
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 1.1e-70 271.6 349 48.1
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.1e-70 271.6 273 56.4
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 4.3e-70 269.6 344 46.8
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 1.2e-69 268.1 468 42.5
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 1.6e-69 267.7 313 48.2
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 1.6e-69 267.7 306 51.6
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 3.6e-69 266.5 353 44.5
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 1.0e-68 265.0 296 52.4
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.4e-68 264.6 289 53.3
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 2.3e-68 263.8 306 50.3
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 2.6e-67 260.4 376 43.6
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 7.5e-67 258.8 386 44.0
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 2.2e-66 257.3 338 50.3
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.2e-65 253.4 188 69.1
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 7.8e-64 248.8 334 48.5
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.1e-62 245.0 307 49.8
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 5.6e-62 242.7 283 50.5
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 3.4e-59 233.4 237 54.0
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 6.4e-58 229.2 440 37.3
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 9.2e-57 225.3 439 36.4
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 2.6e-51 207.2 268 49.6
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.1e-45 187.6 459 32.9
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.1e-45 187.6 459 32.9
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 3.4e-43 180.3 408 32.8
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.9e-39 166.8 176 54.5
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 8.7e-39 165.6 176 54.0
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 7.1e-33 146.0 216 41.7
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.6e-32 144.8 427 28.6
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 8.7e-31 139.0 403 30.0
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.9e-30 137.9 285 33.7
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.3e-30 137.1 329 29.2
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.4e-28 131.7 167 52.1
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.8e-28 131.3 370 29.7
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.6e-27 127.5 343 30.9
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 4.9e-26 123.2 479 24.6
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 7.9e-24 115.9 126 49.2
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.3e-23 115.2 344 29.9
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 5.1e-23 113.2 310 29.0
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.3e-21 108.6 214 34.6
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.2e-17 94.0 147 39.5
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 5.1e-15 86.7 152 40.8
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 4.1e-12 77.0 62 62.9
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 6.9e-12 76.3 80 50.0
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 1.2e-11 75.5 88 46.6
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 2.5e-09 67.8 69 44.9


User provided reference genes

Program Settings