Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 2.5e-215 751.9 397 100.0
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 1.1e-138 497.3 409 68.2
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 9.4e-138 494.2 405 67.9
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.0e-135 486.5 405 67.2
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 4.4e-135 485.3 409 66.5
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.7e-135 485.0 404 66.8
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 6.3e-134 481.5 408 67.6
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 8.2e-134 481.1 403 65.8
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 8.2e-134 481.1 403 65.8
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 1.8e-133 479.9 410 66.1
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 4.1e-133 478.8 403 67.0
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 4.1e-133 478.8 403 65.5
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 2.6e-132 476.1 405 66.2
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 3.5e-132 475.7 409 66.0
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 7.7e-132 474.6 411 67.2
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.0e-131 474.2 409 65.0
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 8.5e-131 471.1 409 62.6
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 8.5e-131 471.1 406 64.3
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 1.9e-130 469.9 411 66.7
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 3.2e-130 469.2 411 66.7
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 7.2e-130 468.0 405 64.9
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 1.0e-128 464.2 409 63.8
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 3.9e-128 462.2 400 65.0
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 5.2e-128 461.8 402 63.7
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 1.1e-127 460.7 404 63.9
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 4.4e-127 458.8 409 61.6
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 7.4e-127 458.0 431 62.4
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 6.3e-126 454.9 392 65.6
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 8.2e-126 454.5 407 62.9
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 5.3e-125 451.8 409 61.6
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 5.9e-124 448.4 398 63.8
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 1.0e-123 447.6 409 61.4
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 1.3e-123 447.2 408 63.5
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 1.1e-122 444.1 401 63.8
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 1.9e-122 443.4 401 62.6
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 3.2e-122 442.6 403 61.8
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 3.2e-122 442.6 383 65.3
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 4.2e-122 442.2 405 60.2
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 1.2e-121 440.7 412 62.4
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 4.7e-121 438.7 403 60.3
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 1.4e-120 437.2 403 61.3
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 1.4e-120 437.2 424 58.0
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 3.0e-120 436.0 403 61.0
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 1.7e-118 430.3 403 60.3
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 6.3e-118 428.3 357 67.5
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.8e-117 426.8 385 65.5
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 1.8e-117 426.8 426 58.5
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 3.1e-117 426.0 408 61.3
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 3.1e-117 426.0 411 61.1
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 4.1e-117 425.6 507 52.5
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 2.0e-116 423.3 411 59.6
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 5.9e-116 421.8 409 60.1
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 1.3e-115 420.6 404 58.2
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 3.8e-115 419.1 399 60.2
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 6.5e-115 418.3 408 60.3
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 8.5e-115 417.9 377 59.2
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 1.5e-114 417.2 404 58.2
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 2.7e-113 412.9 397 60.2
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 2.7e-113 412.9 456 55.7
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 6.1e-113 411.8 409 56.5
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.0e-112 411.0 429 53.8
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 2.3e-112 409.8 418 58.4
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 5.2e-112 408.7 427 58.1
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 8.8e-112 407.9 330 67.9
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 8.8e-112 407.9 405 56.5
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.5e-111 407.1 378 58.5
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 5.7e-111 405.2 411 58.6
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 5.7e-111 405.2 378 58.2
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 1.7e-110 403.7 414 59.2
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 1.8e-109 400.2 418 57.4
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 1.8e-109 400.2 381 58.5
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.4e-109 399.8 387 56.6
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 3.1e-109 399.4 374 62.0
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 1.6e-108 397.1 407 56.3
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 2.7e-108 396.4 410 55.9
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 5.9e-108 395.2 400 57.5
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.7e-107 393.7 384 59.9
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.9e-107 392.9 368 62.5
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 6.6e-107 391.7 407 55.0
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 8.6e-107 391.3 354 61.0
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 1.1e-106 391.0 406 57.9
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 1.5e-106 390.6 399 57.4
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 9.5e-106 387.9 416 55.3
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 1.0e-104 384.4 360 62.8
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 3.7e-102 375.9 375 58.7
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 1.7e-99 367.1 401 53.1
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.5e-98 363.2 500 46.6
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 3.3e-98 362.8 391 52.7
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 2.8e-97 359.8 397 51.6
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 3.6e-97 359.4 397 51.6
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 6.1e-97 358.6 396 52.5
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 2.3e-96 356.7 398 50.8
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 4.0e-96 355.9 394 50.8
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 1.2e-95 354.4 397 51.1
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 5.8e-95 352.1 405 52.8
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 1.1e-93 347.8 382 51.6
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 1.9e-93 347.1 397 51.9
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 7.8e-92 341.7 407 52.6
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 1.5e-90 337.4 446 48.4
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 5.6e-90 335.5 397 51.4
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.2e-89 334.3 394 50.5
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 2.3e-88 330.1 396 49.0
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 9.8e-87 324.7 326 61.3
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 3.7e-86 322.8 421 47.7
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 6.4e-86 322.0 411 50.9
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 6.8e-80 302.0 376 51.3
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 1.4e-77 294.3 292 59.6
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 1.9e-77 293.9 362 51.4
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 4.7e-73 279.3 390 47.2
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.8e-65 253.4 350 47.7
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 4.8e-65 252.7 316 46.8
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 4.0e-64 249.6 300 53.0
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 8.4e-62 241.9 354 45.5
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 1.6e-60 237.7 316 49.7
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 2.3e-59 233.8 446 39.9
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 3.9e-59 233.0 235 55.7
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 2.8e-57 226.9 285 53.0
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 3.0e-51 206.8 217 55.3
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 7.6e-47 192.2 411 35.0
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 4.1e-32 143.3 149 55.0
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 4.1e-32 143.3 149 55.0
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.2e-31 141.7 347 33.7
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.8e-30 136.7 68 85.3
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 1.1e-26 125.2 290 33.4
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.8e-25 120.6 160 46.2
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 4.1e-24 116.7 129 50.4
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 1.1e-21 108.6 98 68.4
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 6.1e-20 102.8 141 46.1
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 2.3e-19 100.9 70 82.9
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 6.3e-17 92.8 145 42.8
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 7.7e-15 85.9 65 70.8
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 8.5e-14 82.4 233 36.1
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 2.3e-11 74.3 39 74.4
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 7.5e-10 69.3 103 42.7
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 3.7e-09 67.0 122 35.2
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 4.8e-09 66.6 86 48.8
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.1e-08 63.9 52 69.2


User provided reference genes

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