Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 8.0e-205 716.8 356 100.0
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 1.3e-106 390.6 333 59.8
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.4e-105 387.1 333 58.9
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 4.2e-105 385.6 333 58.9
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 5.5e-105 385.2 345 58.6
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 1.6e-104 383.6 333 59.5
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 2.8e-101 372.9 335 57.6
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.1e-100 370.9 321 60.4
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 5.3e-100 368.6 335 57.6
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 7.7e-99 364.8 335 58.2
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 3.3e-94 349.4 334 56.0
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 3.5e-91 339.3 336 53.3
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 7.7e-91 338.2 335 54.0
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 1.0e-90 337.8 334 54.8
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.9e-90 336.3 306 55.9
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.1e-88 330.1 334 54.5
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 4.7e-88 328.9 338 53.3
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 8.8e-87 324.7 337 52.2
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 4.4e-86 322.4 336 52.4
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 8.3e-85 318.2 336 51.5
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 1.4e-84 317.4 320 50.3
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 1.8e-84 317.0 336 51.8
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 2.4e-84 316.6 336 50.3
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 2.4e-84 316.6 335 52.2
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 9.1e-84 314.7 336 52.1
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 4.5e-83 312.4 336 53.0
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 4.5e-83 312.4 336 49.1
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 1.3e-82 310.8 335 49.3
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 1.3e-82 310.8 346 52.0
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 1.7e-82 310.5 327 49.8
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 2.9e-82 309.7 335 51.9
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 2.9e-82 309.7 335 49.9
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 6.5e-82 308.5 335 50.4
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 8.5e-82 308.1 341 50.7
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.1e-81 307.8 336 49.4
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.9e-81 307.0 336 49.4
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.5e-81 306.6 336 49.1
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 5.5e-81 305.4 335 51.6
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.1e-80 303.5 335 50.7
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 3.6e-80 302.8 337 48.4
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 6.1e-80 302.0 337 50.1
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 1.0e-79 301.2 346 48.6
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.0e-78 297.0 336 51.5
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.0e-78 297.0 339 49.0
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 1.8e-76 290.4 338 49.7
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 3.1e-76 289.7 343 46.9
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 9.2e-76 288.1 335 49.9
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 1.2e-75 287.7 336 47.6
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.2e-75 287.7 338 50.0
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 1.6e-75 287.3 337 49.9
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 1.3e-74 284.3 338 47.6
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.3e-74 284.3 335 48.7
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 6.6e-74 282.0 334 47.9
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 1.1e-73 281.2 335 48.7
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 4.3e-73 279.3 336 48.8
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 4.3e-73 279.3 293 47.8
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 7.3e-73 278.5 342 45.0
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 9.5e-73 278.1 293 47.8
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 1.6e-72 277.3 309 48.9
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 1.6e-72 277.3 338 45.9
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.6e-72 277.3 335 43.9
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.6e-72 277.3 335 46.9
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.6e-72 277.3 335 46.9
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 2.1e-72 276.9 309 48.2
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 2.1e-72 276.9 309 48.2
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 2.1e-72 276.9 338 46.2
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 2.8e-72 276.6 281 53.4
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 4.7e-72 275.8 335 47.8
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 1.0e-71 274.6 336 44.6
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 1.0e-71 274.6 255 58.4
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 1.8e-71 273.9 310 49.7
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 1.8e-71 273.9 337 44.8
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 2.3e-71 273.5 338 45.6
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 8.9e-71 271.6 338 45.9
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 8.9e-71 271.6 335 48.1
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 2.6e-70 270.0 295 50.8
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 2.6e-70 270.0 338 47.3
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 7.5e-70 268.5 309 50.8
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 7.5e-70 268.5 304 49.3
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 7.5e-70 268.5 335 47.8
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 1.3e-69 267.7 282 52.1
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 2.9e-69 266.5 335 43.3
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 4.9e-69 265.8 293 49.1
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 4.1e-68 262.7 328 47.0
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 1.2e-67 261.2 330 46.4
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 1.6e-67 260.8 328 45.7
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 7.8e-67 258.5 329 46.2
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 7.8e-67 258.5 303 50.2
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 2.3e-66 256.9 301 50.2
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 2.3e-66 256.9 329 44.7
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 5.0e-66 255.8 314 46.2
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 6.6e-66 255.4 301 49.2
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 6.6e-66 255.4 300 46.0
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 8.6e-66 255.0 292 48.6
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 1.9e-65 253.8 322 45.0
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.9e-65 253.8 336 44.9
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 1.9e-65 253.8 328 45.7
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 4.3e-65 252.7 295 49.5
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 4.3e-65 252.7 335 43.3
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 9.5e-65 251.5 288 49.0
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.6e-64 250.8 310 48.1
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.6e-64 250.8 310 46.8
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 2.1e-64 250.4 314 44.9
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 2.8e-64 250.0 335 45.4
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 8.0e-64 248.4 349 43.3
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 3.1e-63 246.5 323 44.6
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 5.2e-63 245.7 300 47.0
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 3.4e-62 243.0 342 45.0
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 4.4e-62 242.7 286 48.3
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.3e-61 241.1 325 42.5
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 1.7e-61 240.7 328 40.5
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.7e-61 240.7 339 43.1
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 2.2e-61 240.4 335 44.8
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 2.2e-61 240.4 280 45.0
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 4.9e-61 239.2 328 43.6
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 3.2e-60 236.5 290 47.6
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 7.0e-60 235.3 295 46.8
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 2.0e-59 233.8 336 44.3
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 2.3e-58 230.3 285 45.6
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 2.3e-58 230.3 285 45.6
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 2.5e-57 226.9 295 46.1
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 1.2e-56 224.6 284 46.1
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 1.6e-56 224.2 303 42.9
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 4.7e-56 222.6 326 40.8
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.4e-55 221.1 345 41.4
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 3.1e-55 219.9 325 40.3
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 5.2e-55 219.2 198 57.1
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 2.0e-54 217.2 326 39.6
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 2.2e-53 213.8 297 42.8
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 8.3e-53 211.8 326 41.4
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 5.4e-52 209.1 283 44.2
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 2.5e-49 200.3 286 40.9
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 4.7e-48 196.1 137 65.7
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 9.9e-46 188.3 332 37.0
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 6.4e-45 185.7 137 62.8
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.4e-44 184.5 241 45.2
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 1.9e-44 184.1 275 41.1
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.2e-44 183.3 241 44.8
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.1e-43 180.6 129 63.6
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 1.9e-41 174.1 211 40.8
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 5.6e-41 172.6 252 41.7
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 1.2e-35 154.8 295 37.6
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 1.7e-34 151.0 287 36.2
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 6.9e-31 139.0 279 34.8
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 6.7e-26 122.5 103 55.3
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 6.5e-13 79.3 132 36.4
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 9.6e-09 65.5 153 30.1
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.2e-06 58.5 39 71.8


User provided reference genes

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