Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 2.8e-42 174.9 88 100.0
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 3.7e-26 121.3 81 70.4
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 1.1e-25 119.8 81 71.6
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 1.1e-25 119.8 81 70.4
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 1.4e-25 119.4 81 70.4
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 3.1e-25 118.2 81 67.9
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 4.0e-25 117.9 81 66.7
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 5.3e-25 117.5 82 68.3
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 6.9e-25 117.1 81 69.1
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 9.0e-25 116.7 81 69.1
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 9.0e-25 116.7 81 69.1
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 9.0e-25 116.7 81 67.9
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 1.2e-24 116.3 81 67.9
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 1.5e-24 115.9 81 67.9
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 3.4e-24 114.8 81 69.1
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 3.4e-24 114.8 81 66.7
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 4.5e-24 114.4 81 67.9
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 4.5e-24 114.4 81 67.9
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 5.8e-24 114.0 81 65.4
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 7.6e-24 113.6 81 63.0
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 7.6e-24 113.6 81 67.9
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 7.6e-24 113.6 81 66.7
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 1.0e-23 113.2 81 66.7
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 1.3e-23 112.8 81 65.4
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 1.7e-23 112.5 81 64.2
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 1.7e-23 112.5 81 67.9
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 1.7e-23 112.5 81 65.4
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 2.2e-23 112.1 81 65.4
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 2.9e-23 111.7 81 65.4
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 2.9e-23 111.7 81 67.9
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 3.8e-23 111.3 81 65.4
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 4.9e-23 110.9 81 65.4
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 4.9e-23 110.9 81 64.2
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 8.4e-23 110.2 81 61.7
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 1.1e-22 109.8 81 65.4
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 1.1e-22 109.8 81 64.2
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 1.9e-22 109.0 81 64.2
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 1.9e-22 109.0 81 64.2
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 2.5e-22 108.6 81 63.0
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.5e-22 108.6 81 64.2
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 3.2e-22 108.2 81 60.5
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 3.2e-22 108.2 81 64.2
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 4.2e-22 107.8 81 59.3
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 5.5e-22 107.5 81 65.4
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 7.1e-22 107.1 81 63.0
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 9.3e-22 106.7 81 61.7
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 9.3e-22 106.7 81 63.0
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 1.2e-21 106.3 81 60.5
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 1.2e-21 106.3 81 64.2
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 1.6e-21 105.9 81 63.0
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.6e-21 105.9 81 63.0
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.6e-21 105.9 81 63.0
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 2.1e-21 105.5 80 63.8
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 2.7e-21 105.1 81 63.0
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 3.5e-21 104.8 82 63.4
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 4.6e-21 104.4 81 63.0
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 4.6e-21 104.4 81 61.7
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 4.6e-21 104.4 81 61.7
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 4.6e-21 104.4 81 59.3
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 4.6e-21 104.4 81 65.4
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 1.0e-20 103.2 81 60.5
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 1.0e-20 103.2 81 63.0
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.3e-20 102.8 81 59.3
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 1.3e-20 102.8 81 66.7
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 1.8e-20 102.4 86 55.8
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 1.8e-20 102.4 81 58.0
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 1.8e-20 102.4 81 63.0
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 3.9e-20 101.3 81 60.5
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 5.1e-20 100.9 81 64.2
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 5.1e-20 100.9 81 60.5
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 5.1e-20 100.9 81 61.7
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 6.7e-20 100.5 81 59.3
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 6.7e-20 100.5 81 59.3
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 6.7e-20 100.5 81 59.3
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 6.7e-20 100.5 81 59.3
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 6.7e-20 100.5 81 59.3
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 1.1e-19 99.8 81 59.3
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 1.1e-19 99.8 81 59.3
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 1.5e-19 99.4 81 59.3
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 1.5e-19 99.4 81 59.3
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 1.5e-19 99.4 81 59.3
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 1.5e-19 99.4 81 59.3
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.9e-19 99.0 81 60.5
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 1.9e-19 99.0 81 56.8
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 2.5e-19 98.6 81 58.0
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 3.3e-19 98.2 81 61.7
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 3.3e-19 98.2 81 61.7
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 3.3e-19 98.2 81 58.0
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 3.3e-19 98.2 81 63.0
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 7.4e-19 97.1 81 56.8
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 9.7e-19 96.7 81 61.7
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 9.7e-19 96.7 81 56.8
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 2.2e-18 95.5 81 56.8
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 2.2e-18 95.5 81 56.8
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 2.2e-18 95.5 81 56.8
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 2.2e-18 95.5 81 56.8
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 3.7e-18 94.7 81 61.7
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 4.8e-18 94.4 81 59.3
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 6.3e-18 94.0 108 49.1
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 6.3e-18 94.0 81 55.6
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 6.3e-18 94.0 81 59.3
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 8.2e-18 93.6 81 54.3
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 1.1e-17 93.2 81 55.6
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 4.1e-17 91.3 81 50.6
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 4.1e-17 91.3 81 59.3
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 5.3e-17 90.9 81 59.3
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 5.3e-17 90.9 81 59.3
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 6.9e-17 90.5 81 58.0
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 6.9e-17 90.5 79 54.4
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 6.9e-17 90.5 72 58.3
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 9.0e-17 90.1 81 54.3
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 9.0e-17 90.1 81 54.3
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 9.0e-17 90.1 81 49.4
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 2.0e-16 89.0 82 52.4
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 2.6e-16 88.6 81 55.6
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 3.8e-15 84.7 81 48.1
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 6.5e-15 84.0 56 80.4
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 8.5e-15 83.6 65 60.0
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 1.1e-14 83.2 82 48.8
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 1.4e-14 82.8 82 47.6
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.7e-13 78.6 81 51.9
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 2.7e-13 78.6 81 51.9
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 4.6e-13 77.8 81 45.7
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 3.3e-11 71.6 82 42.7
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 9.7e-11 70.1 83 49.4
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 2.2e-10 68.9 81 39.5
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 2.8e-10 68.6 60 53.3
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 8.5e-07 57.0 78 42.3
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 9.4e-06 53.5 79 34.2


User provided reference genes

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