Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2774.2 1398 100.0
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2573.1 1399 92.2
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2571.2 1399 92.1
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2567.0 1398 91.7
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2563.5 1399 91.7
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2556.9 1398 90.3
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2556.6 1399 91.3
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2553.5 1401 90.6
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2550.8 1400 90.6
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2547.7 1399 90.3
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2546.2 1399 91.4
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2544.2 1398 90.4
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2543.5 1401 90.3
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2542.3 1398 91.0
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2539.6 1399 90.6
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2535.4 1398 90.6
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2534.6 1399 90.6
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2533.4 1398 90.2
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2533.1 1398 89.9
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2532.7 1401 89.9
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2532.3 1398 90.1
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2531.9 1398 89.8
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2531.5 1403 90.1
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2531.5 1398 89.9
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2530.7 1399 91.4
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2530.7 1399 89.9
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2530.0 1399 90.5
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2528.8 1399 90.5
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2528.4 1399 91.0
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2527.3 1403 90.0
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2525.7 1399 90.0
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2525.0 1398 89.9
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2523.4 1398 90.3
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2521.9 1400 89.9
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2519.2 1398 90.1
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2517.7 1399 89.9
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2516.5 1399 89.9
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2515.0 1399 89.5
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2514.6 1399 89.6
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2514.2 1399 89.6
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2509.6 1399 89.3
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2505.7 1400 89.1
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2502.2 1398 89.1
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2501.9 1399 89.1
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2499.9 1399 88.4
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2499.2 1398 88.8
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2498.4 1397 88.5
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2496.8 1399 89.1
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2492.2 1398 88.2
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2492.2 1398 88.6
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2491.1 1398 88.1
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2488.4 1399 88.0
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2488.0 1398 89.7
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2488.0 1401 87.7
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2484.9 1400 88.5
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2483.0 1398 88.3
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2482.6 1398 87.9
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2477.2 1400 88.3
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2477.2 1400 88.3
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2475.3 1398 88.6
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2474.9 1398 87.8
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2473.4 1398 87.7
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2471.8 1400 87.6
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2471.0 1399 87.3
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2468.7 1400 87.8
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2464.1 1398 87.4
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2463.3 1398 88.4
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2462.6 1398 87.3
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2462.6 1398 87.3
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2461.4 1398 87.4
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2459.9 1461 84.0
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2459.1 1400 87.0
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2456.8 1398 87.4
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2449.5 1425 85.8
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2446.0 1350 89.9
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2441.4 1356 88.9
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2437.1 1400 87.4
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2427.5 1400 85.9
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2425.2 1400 85.9
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2410.6 1399 85.4
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2407.9 1399 85.2
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2405.9 1398 85.6
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2404.4 1399 85.4
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2398.2 1399 85.1
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2393.6 1399 84.8
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2390.1 1399 84.7
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2389.8 1408 85.7
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2389.0 1399 84.9
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2389.0 1399 84.9
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2387.8 1399 84.8
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2385.9 1399 84.8
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2385.9 1399 84.8
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2382.1 1398 85.4
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2370.9 1401 84.9
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2366.3 1398 84.8
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2357.8 1401 84.2
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2343.2 1370 84.7
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2317.0 1274 90.8
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2302.3 1365 83.5
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2297.3 1274 90.6
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2261.1 1277 88.7
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2219.5 1362 82.2
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2184.1 1348 79.7
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2182.9 1357 78.6
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2180.6 1387 77.4
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2161.0 1361 77.4
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2159.4 1346 78.5
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2159.4 1346 78.5
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 2032.7 1135 88.7
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2015.7 1396 76.4
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 2012.7 1123 88.7
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1950.6 1401 74.6
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1877.8 1350 68.8
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1865.9 1349 68.6
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1715.7 913 93.1
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1709.5 1398 65.9
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1645.6 898 90.9
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1508.4 808 92.2
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1508.4 809 92.2
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1159.8 690 85.1
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1104.7 691 80.0
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 1.0e-303 1047.3 685 78.2
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 7.5e-299 1031.2 586 86.0
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 3.6e-261 906.0 1214 43.2
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 1.2e-259 901.0 607 76.1
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 3.3e-238 829.7 470 86.8
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 4.5e-235 819.3 470 85.7
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 3.8e-234 816.2 470 85.7
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 2.6e-219 766.9 471 81.7
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 2.2e-202 710.7 413 83.8
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 6.4e-173 612.8 1390 32.1
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 1.6e-160 571.6 1485 29.9
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 3.0e-106 391.3 1296 27.5
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 2.0e-89 335.5 175 94.3
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 8.9e-66 256.9 147 83.0
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 3.3e-60 238.4 123 93.5
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 5.4e-47 194.5 107 90.7
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 2.8e-43 182.2 174 59.2
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 9.3e-31 140.6 139 51.1
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 2.5e-28 132.5 99 70.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 2.4e-26 125.9 91 70.3
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 2.1e-19 102.8 63 79.4


User provided reference genes

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