Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g17080 Coffea canephora HOM05D007490 ORTHO05D008750 3.3e-94 348.6 207 100.0
Solyc04g015730.3 Solanum lycopersicum HOM05D007490 ORTHO05D008750 4.9e-29 132.1 183 53.0
Sopen04g007810 Solanum pennellii HOM05D007490 ORTHO05D008750 1.9e-28 130.2 170 49.4
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 1.6e-27 127.1 171 47.4
Nitab4.5_0005611g0010 Nicotiana tabacum HOM05D007490 ORTHO05D008750 1.3e-26 124.0 171 48.5
Hma1.2p1_2266F.1_g318420 Hydrangea macrophylla HOM05D007490 ORTHO05D008750 5.1e-26 122.1 181 48.1
Lsat_1_v5_gn_8_81320 Lactuca sativa HOM05D007490 ORTHO05D008750 8.9e-23 111.3 194 41.8
Ciclev10005740m.g Citrus clementina HOM05D007490 ORTHO05D008750 1.3e-21 107.5 184 42.4
Sopen10g030750 Solanum pennellii HOM05D015445 ORTHO05D008750 1.7e-21 107.1 189 40.7
Gohir.A11G312500 Gossypium hirsutum HOM05D007490 ORTHO05D008750 3.7e-21 105.9 204 40.2
Gohir.D11G329000 Gossypium hirsutum HOM05D007490 ORTHO05D008750 6.4e-21 105.1 203 39.4
Gorai.007G360400 Gossypium raimondii HOM05D007490 ORTHO05D008750 6.4e-21 105.1 203 39.4
QL07p000297 Quercus lobata HOM05D007490 ORTHO05D008750 3.2e-20 102.8 190 42.6
Dinv39599 Davidia involucrata HOM05D007490 ORTHO05D008750 4.1e-20 102.4 185 46.5
Nn7g36272 Nelumbo nucifera HOM05D007490 ORTHO05D008750 4.1e-20 102.4 194 44.8
Thecc.05G153900 Theobroma cacao HOM05D007490 ORTHO05D008750 7.1e-20 101.7 196 40.8
MD12G1073500 Malus domestica HOM05D007490 ORTHO05D008750 1.6e-19 100.5 194 39.2
Glyma.02G183950 Glycine max HOM05D007490 ORTHO05D008750 2.7e-19 99.8 183 41.5
Atru.chr1.1094 Acer truncatum HOM05D007490 ORTHO05D008750 7.8e-19 98.2 191 38.7
Rhsim03G0021300 Rhododendron simsii HOM05D007490 ORTHO05D008750 1.3e-18 97.4 197 39.6
CANSAT80G2830 Cannabis sativa HOM05D007490 ORTHO05D008750 6.6e-18 95.1 182 40.7
ECA236G0950 Erigeron canadensis HOM05D007490 ORTHO05D008750 6.6e-18 95.1 194 45.9
Sc13g0001780 Simmondsia chinensis HOM05D007490 ORTHO05D008750 6.6e-18 95.1 99 51.5
Manes.09G021650 Manihot esculenta HOM05D007490 ORTHO05D008750 8.6e-18 94.7 194 37.6
SGA_v2.0_scaffold94G28485 Striga asiatica HOM05D007490 ORTHO05D008750 8.6e-18 94.7 183 41.5
Migut.K00089 Erythranthe guttata HOM05D007490 ORTHO05D008750 1.1e-17 94.4 196 48.0
Sed0009481 Sechium edule HOM05D007490 ORTHO05D008750 1.1e-17 94.4 74 63.5
DCAR_013600 Daucus carota HOM05D007490 ORTHO05D008750 1.9e-17 93.6 192 36.5
CsaV3_4G011720 Cucumis sativus L. HOM05D007490 ORTHO05D008750 2.5e-17 93.2 194 41.2
Prupe.7G061400 Prunus persica HOM05D007490 ORTHO05D008750 3.3e-17 92.8 194 41.2
SalBow3G0554 Salvia bowleyana HOM05D007490 ORTHO05D008750 4.3e-17 92.4 153 43.8
Duzib128G0116 Durio zibethinus HOM05D007490 ORTHO05D008750 5.6e-17 92.0 203 38.9
PGR004G2251 Punica granatum HOM05D007490 ORTHO05D008750 9.5e-17 91.3 186 38.7
COL.COLO4_28277 Corchorus olitorius HOM05D007490 ORTHO05D008750 1.2e-16 90.9 199 38.7
Potri.006G050900 Populus trichocarpa HOM05D007490 ORTHO05D008750 1.6e-16 90.5 193 38.9
SGA_v2.0_scaffold273G46437 Striga asiatica HOM05D007490 ORTHO05D008750 6.2e-16 88.6 166 38.6
ClCG00G005730 Citrullus lanatus HOM05D007490 ORTHO05D008750 1.1e-15 87.8 149 42.3
FvH4_6g23771 Fragaria vesca HOM05D007490 ORTHO05D008750 1.1e-15 87.8 191 37.7
PSO339G3404 Papaver somniferum HOM05D007490 ORTHO05D008750 1.4e-15 87.4 201 34.8
AUR62024445 Chenopodium quinoa HOM05D007490 ORTHO05D008750 1.8e-15 87.0 184 41.3
PSO384G3220 Papaver somniferum HOM05D007490 ORTHO05D008750 1.8e-15 87.0 184 36.4
Eucgr.A02350 Eucalyptus grandis HOM05D007490 ORTHO05D008750 2.4e-15 86.7 162 42.0
FAN14G3182 Fragaria x ananassa HOM05D007490 ORTHO05D008750 2.4e-15 86.7 72 59.7
arahy.Tifrunner.gnm1.ann1.M65R33 Arachis hypogaea HOM05D007490 ORTHO05D008750 3.1e-15 86.3 69 63.8
arahy.Tifrunner.gnm1.ann1.QGQ977 Arachis hypogaea HOM05D007490 ORTHO05D008750 3.1e-15 86.3 69 63.8
RcHm_v2.0_Chr3g0482221 Rosa chinensis HOM05D007490 ORTHO05D008750 3.1e-15 86.3 186 45.7
Aqoxy3G01571 Aquilegia oxysepala HOM05D007490 ORTHO05D008750 4.0e-15 85.9 72 61.1
FAN09G1636 Fragaria x ananassa HOM05D007490 ORTHO05D008750 6.8e-15 85.1 75 57.3
AUR62026035 Chenopodium quinoa HOM05D007490 ORTHO05D008750 8.9e-15 84.7 184 40.8
Rhsim03G0022200 Rhododendron simsii HOM05D007490 ORTHO05D008750 8.9e-15 84.7 216 36.1
unitig_0.g2659 Utricularia gibba HOM05D007490 ORTHO05D008750 4.4e-14 82.4 190 37.9
TWI74G0148 Tripterygium wilfordii HOM05D007490 ORTHO05D008750 7.6e-14 81.6 64 65.6
AT3G57440 Arabidopsis thaliana HOM05D007490 ORTHO05D008750 1.3e-13 80.9 89 51.7
SHI15744 Sapria himalayana HOM05D007490 ORTHO05D008750 1.7e-13 80.5 67 59.7
Sabra06G0035600 Salix brachista HOM05D007490 ORTHO05D008750 2.2e-13 80.1 191 46.6
Actinidia09331 Actinidia chinensis HOM05D007490 ORTHO05D008750 2.9e-13 79.7 163 41.7
Aqoxy5G00272 Aquilegia oxysepala HOM05D007490 ORTHO05D008750 3.8e-13 79.3 65 63.1
Ah.04g151770 Amaranthus hybridus HOM05D007490 ORTHO05D008750 1.4e-12 77.4 191 33.5
Sp5g05160 Schrenkiella parvula HOM05D007490 ORTHO05D008750 1.4e-12 77.4 62 62.9
Carub.0005s2428 Capsella rubella HOM05D007490 ORTHO05D008750 2.4e-12 76.6 65 58.5
A09p50330 Brassica napus HOM05D007490 ORTHO05D008750 3.2e-12 76.3 187 34.8
BcaC07g40379 Brassica carinata HOM05D007490 ORTHO05D008750 5.4e-12 75.5 181 33.1
BcaC07g40383 Brassica carinata HOM05D007490 ORTHO05D008750 5.4e-12 75.5 72 54.2
A03p23430 Brassica napus HOM05D007490 ORTHO05D008750 1.6e-11 73.9 79 49.4
BraA03t11560Z Brassica rapa HOM05D007490 ORTHO05D008750 1.6e-11 73.9 79 49.4
Oeu033005.1 Olea europaea HOM05D007490 ORTHO05D008750 1.6e-11 73.9 174 42.5
Thhalv10017790m.g Eutrema salsugineum HOM05D007490 ORTHO05D008750 2.1e-11 73.6 75 52.0
SEGI_14290 Sequoiadendron giganteum HOM05D007490 ORTHO05D008750 3.5e-11 72.8 69 50.7
SEGI_34104 Sequoiadendron giganteum HOM05D007490 ORTHO05D008750 3.5e-11 72.8 69 50.7
AL5G39010 Arabidopsis lyrata HOM05D007490 ORTHO05D008750 4.6e-11 72.4 197 34.5
Peaxi162Scf00354g00210 Petunia axillaris HOM05D015445 ORTHO05D008750 4.6e-11 72.4 138 52.2
CiPaw.09G038000 Carya illinoinensis HOM05D007490 ORTHO05D008750 6.0e-11 72.0 180 38.3
Thhalv10006439m.g Eutrema salsugineum HOM05D007490 ORTHO05D008750 6.0e-11 72.0 180 35.0
BcaNung06245 Brassica carinata HOM05D007490 ORTHO05D008750 7.8e-11 71.6 79 46.8
CARHR167640 Cardamine hirsuta HOM05D007490 ORTHO05D008750 1.3e-10 70.9 187 35.3
TAR636G1914 Trochodendron aralioides HOM05D007490 ORTHO05D008750 1.3e-10 70.9 167 38.9
MD14G1067100 Malus domestica HOM05D007490 ORTHO05D008750 2.3e-10 70.1 64 59.4
C03p27950 Brassica napus HOM05D007490 ORTHO05D008750 3.0e-10 69.7 77 45.5
BolC3t15167H Brassica oleracea HOM05D007490 ORTHO05D008750 3.0e-10 69.7 77 45.5
SEGI_24459 Sequoiadendron giganteum HOM05D007490 ORTHO05D008750 8.7e-10 68.2 68 50.0
PGSC0003DMG400023724 Solanum tuberosum HOM05D015445 ORTHO05D008750 8.7e-10 68.2 171 37.4
Haze_19861 Corylus avellana HOM05D007490 ORTHO05D008750 1.1e-09 67.8 163 39.3
Actinidia39227 Actinidia chinensis HOM05D007490 ORTHO05D008750 2.5e-09 66.6 161 39.1
SEGI_37898 Sequoiadendron giganteum HOM05D007490 ORTHO05D008750 3.3e-09 66.2 89 41.6
Solyc10g080140.2 Solanum lycopersicum HOM05D015445 ORTHO05D008750 3.3e-09 66.2 163 36.2
Medtr0100s0190 Medicago truncatula HOM05D007490 ORTHO05D008750 7.3e-09 65.1 154 35.7
Cpa.g.sc92.48 Carica papaya HOM05D007490 ORTHO05D008750 1.6e-08 63.9 159 36.5
Psat6g119920 Pisum sativum HOM05D007490 ORTHO05D008750 2.1e-08 63.5 187 33.7
Lalb_Chr21g0316471 Lupinus albus HOM05D007490 ORTHO05D008750 2.8e-08 63.2 44 70.5
Os07g0656300 Oryza sativa ssp. japonica HOM05D022794 ORTHO05D023027 4.7e-08 62.4 69 52.2
Ca_26016_v3 Cicer arietinum L. HOM05D007490 ORTHO05D008750 1.4e-07 60.8 161 32.3
Lj5g0014197 Lotus japonicus HOM05D007490 ORTHO05D008750 1.4e-07 60.8 155 36.1
Phvul.007G252900 Phaseolus vulgaris HOM05D007490 ORTHO05D008750 2.4e-07 60.1 189 34.9
VMungo0720G0884 Vigna mungo HOM05D007490 ORTHO05D008750 3.1e-07 59.7 178 35.4
TPR.G10631 Trifolium pratense HOM05D007490 ORTHO05D008750 4.0e-07 59.3 186 33.3
PSO675G6051 Papaver somniferum HOM05D008994 ORTHO05D010954 1.5e-06 57.4 60 51.7
THA.LOC104804865 Tarenaya hassleriana HOM05D007490 ORTHO05D008750 2.6e-06 56.6 66 51.5
AagrBONN_evm.TU.Sc2ySwM_228.5650 Anthoceros agrestis HOM05D017655 ORTHO05D008750 9.9e-06 54.7 75 44.0


User provided reference genes

Program Settings