Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 4.0e-53 211.1 100 100.0
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 1.6e-14 82.8 55 70.9
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.1e-13 80.1 71 53.5
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 1.1e-13 80.1 84 50.0
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.4e-13 79.7 94 50.0
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.1e-13 78.6 43 74.4
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.1e-13 78.6 43 74.4
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.1e-13 78.6 86 47.7
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 3.1e-13 78.6 94 50.0
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 4.0e-13 78.2 87 46.0
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.0e-13 78.2 74 54.1
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.3e-13 77.8 86 46.5
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 5.3e-13 77.8 89 46.1
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 6.9e-13 77.4 44 75.0
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 9.0e-13 77.0 78 53.8
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 9.0e-13 77.0 36 88.9
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.2e-12 76.6 94 48.9
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 2.0e-12 75.9 94 44.7
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.0e-12 75.9 43 69.8
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 2.0e-12 75.9 42 73.8
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 2.6e-12 75.5 72 54.2
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 3.4e-12 75.1 44 72.7
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 4.5e-12 74.7 77 50.6
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 5.8e-12 74.3 53 66.0
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 7.6e-12 73.9 84 51.2
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 7.6e-12 73.9 95 44.2
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 7.6e-12 73.9 44 70.5
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 7.6e-12 73.9 44 70.5
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.0e-11 73.6 40 77.5
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 1.3e-11 73.2 77 49.4
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 1.3e-11 73.2 44 75.0
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 1.3e-11 73.2 44 75.0
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 1.3e-11 73.2 44 75.0
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 1.3e-11 73.2 49 69.4
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.3e-11 73.2 57 59.6
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 1.3e-11 73.2 52 67.3
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.3e-11 73.2 55 60.0
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 1.3e-11 73.2 43 69.8
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.7e-11 72.8 103 41.7
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.7e-11 72.8 48 68.8
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.2e-11 72.4 37 81.1
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.2e-11 72.4 37 81.1
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 2.2e-11 72.4 41 73.2
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 2.2e-11 72.4 46 69.6
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.9e-11 72.0 42 69.0
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 2.9e-11 72.0 76 51.3
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 3.8e-11 71.6 38 76.3
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 3.8e-11 71.6 36 86.1
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 4.9e-11 71.2 41 68.3
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.9e-11 71.2 37 78.4
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.9e-11 71.2 41 73.2
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 6.5e-11 70.9 37 75.7
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 6.5e-11 70.9 37 75.7
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 8.4e-11 70.5 77 48.1
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 8.4e-11 70.5 35 82.9
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 8.4e-11 70.5 35 82.9
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 8.4e-11 70.5 35 82.9
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 8.4e-11 70.5 64 54.7
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 1.1e-10 70.1 41 73.2
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 1.1e-10 70.1 52 65.4
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 1.1e-10 70.1 52 65.4
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 1.1e-10 70.1 33 87.9
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 1.1e-10 70.1 92 47.8
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 1.1e-10 70.1 76 48.7
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 1.4e-10 69.7 76 52.6
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 1.4e-10 69.7 81 48.1
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.4e-10 69.7 42 71.4
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.4e-10 69.7 39 76.9
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.4e-10 69.7 46 63.0
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 1.4e-10 69.7 34 82.4
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.9e-10 69.3 81 48.1
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.9e-10 69.3 88 46.6
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.9e-10 69.3 83 44.6
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.9e-10 69.3 48 68.8
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 1.9e-10 69.3 72 50.0
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 2.5e-10 68.9 42 73.8
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.5e-10 68.9 42 64.3
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 2.5e-10 68.9 42 64.3
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.5e-10 68.9 88 42.0
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 3.2e-10 68.6 45 66.7
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 4.2e-10 68.2 32 90.6
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 4.2e-10 68.2 38 73.7
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 4.2e-10 68.2 32 90.6
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 4.2e-10 68.2 79 46.8
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 5.5e-10 67.8 38 73.7
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 5.5e-10 67.8 91 42.9
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 5.5e-10 67.8 37 75.7
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 7.1e-10 67.4 32 87.5
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 7.1e-10 67.4 37 81.1
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 7.1e-10 67.4 82 48.8
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.1e-10 67.4 50 58.0
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 9.3e-10 67.0 40 67.5
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.2e-09 66.6 43 60.5
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.6e-09 66.2 34 76.5
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.1e-09 65.9 37 73.0
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 2.1e-09 65.9 43 67.4
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 2.1e-09 65.9 44 63.6
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.1e-09 65.9 60 55.0
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 2.7e-09 65.5 32 84.4
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.7e-09 65.5 44 59.1
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.7e-09 65.5 85 47.1
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 3.5e-09 65.1 33 78.8
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.5e-09 65.1 44 56.8
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.5e-09 65.1 44 56.8
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 4.6e-09 64.7 44 65.9
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 4.6e-09 64.7 53 54.7
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 4.6e-09 64.7 33 81.8
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 6.0e-09 64.3 73 47.9
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 7.9e-09 63.9 33 81.8
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 7.9e-09 63.9 31 87.1
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 7.9e-09 63.9 41 63.4
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 7.9e-09 63.9 32 84.4
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 7.9e-09 63.9 38 63.2
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.0e-08 63.5 35 74.3
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 1.0e-08 63.5 41 65.9
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 1.0e-08 63.5 34 73.5
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 1.3e-08 63.2 30 90.0
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 1.3e-08 63.2 32 81.2
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.3e-08 63.2 84 42.9
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 1.3e-08 63.2 30 86.7
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.8e-08 62.8 31 80.6
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.8e-08 62.8 84 46.4
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 2.3e-08 62.4 31 83.9
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 2.3e-08 62.4 85 43.5
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 3.0e-08 62.0 44 61.4
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 3.0e-08 62.0 29 89.7
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 3.9e-08 61.6 30 86.7
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 3.9e-08 61.6 30 86.7
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 3.9e-08 61.6 30 86.7
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 3.9e-08 61.6 30 83.3
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 3.9e-08 61.6 32 78.1
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 5.1e-08 61.2 30 80.0
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 5.1e-08 61.2 76 43.4
Potri.009G058500 Populus trichocarpa HOM05D003654 ORTHO05D004176 6.7e-08 60.8 44 63.6
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 6.7e-08 60.8 85 43.5
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 8.7e-08 60.5 30 83.3
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 8.7e-08 60.5 30 83.3
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 8.7e-08 60.5 30 83.3
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 8.7e-08 60.5 30 80.0
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 8.7e-08 60.5 30 83.3
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 8.7e-08 60.5 32 81.2
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 8.7e-08 60.5 32 75.0
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 8.7e-08 60.5 91 42.9
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 1.1e-07 60.1 39 66.7
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.1e-07 60.1 30 83.3
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.1e-07 60.1 29 86.2
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 1.1e-07 60.1 31 77.4
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 1.5e-07 59.7 30 83.3
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 1.5e-07 59.7 41 70.7
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 1.5e-07 59.7 30 80.0
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 1.9e-07 59.3 83 39.8
CSS0025582 Camellia sinensis var. sinensis HOM05D003654 ORTHO05D004176 2.5e-07 58.9 85 42.4
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 2.5e-07 58.9 48 56.2
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 4.3e-07 58.2 31 77.4
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 4.3e-07 58.2 33 72.7
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 5.7e-07 57.8 30 80.0
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 5.7e-07 57.8 52 57.7
Peaxi162Scf00071g01115 Petunia axillaris HOM05D003654 ORTHO05D004176 9.6e-07 57.0 38 63.2
Peaxi162Scf00138g00032 Petunia axillaris HOM05D003654 ORTHO05D004176 9.6e-07 57.0 32 71.9
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 1.3e-06 56.6 30 76.7
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.3e-06 56.6 30 80.0
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 1.3e-06 56.6 41 56.1
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.6e-06 56.2 30 70.0
Nitab4.5_0005680g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.1e-06 55.8 37 62.2
Lalb_Chr25g0282791 Lupinus albus HOM05D003654 ORTHO05D004176 2.8e-06 55.5 40 60.0
Nitab4.5_0000808g0050 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.8e-06 55.5 35 65.7
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 2.8e-06 55.5 30 73.3
Hma1.2p1_2135F.1_g314830 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.7e-06 55.1 37 56.8
Psat5g210480 Pisum sativum HOM05D003654 ORTHO05D004176 4.8e-06 54.7 44 52.3
TPR.G28386 Trifolium pratense HOM05D003654 ORTHO05D004176 4.8e-06 54.7 44 52.3
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 6.2e-06 54.3 30 70.0
Lsat_1_v5_gn_1_105600 Lactuca sativa HOM05D003654 ORTHO05D004176 6.2e-06 54.3 43 60.5
Potri.012G032500 Populus trichocarpa HOM05D003654 ORTHO05D004176 6.2e-06 54.3 35 71.4
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 6.2e-06 54.3 30 70.0
Hma1.2p1_0629F.1_g192090 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 8.2e-06 53.9 37 56.8


User provided reference genes

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