Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 0.0e+00 2209.5 1133 100.0
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 0.0e+00 1219.1 1095 59.9
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 0.0e+00 1157.1 1098 56.6
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1151.7 1092 56.0
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 0.0e+00 1133.6 1101 56.1
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 0.0e+00 1130.2 1097 54.7
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 0.0e+00 1121.3 1097 54.0
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 0.0e+00 1095.9 1097 53.2
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 0.0e+00 1090.5 1112 53.2
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 0.0e+00 1089.3 1099 53.1
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 0.0e+00 1087.4 1097 53.5
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 0.0e+00 1082.4 1112 53.6
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 0.0e+00 1081.2 1065 54.2
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 0.0e+00 1078.2 1099 53.4
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 8.8e-306 1053.9 1096 52.2
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 6.9e-303 1044.3 1097 52.0
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 4.5e-302 1041.6 1095 51.5
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 1.0e-301 1040.4 1113 50.3
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 3.8e-301 1038.5 1095 51.4
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 3.2e-300 1035.4 1104 50.7
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 1.6e-299 1033.1 1106 51.4
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.4e-298 1030.0 1099 51.3
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 2.3e-298 1029.2 1101 51.1
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 7.4e-297 1024.2 1099 51.0
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 4.1e-295 1018.5 1100 51.3
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 9.1e-295 1017.3 1098 50.7
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.0e-294 1016.1 1099 50.6
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 1.5e-292 1010.0 1057 52.0
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 1.9e-292 1009.6 1093 50.2
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 2.1e-291 1006.1 1096 50.4
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 2.1e-291 1006.1 1085 52.3
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 6.1e-291 1004.6 1095 50.5
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 3.0e-290 1002.3 1096 50.7
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 5.0e-285 984.9 1103 50.1
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 1.5e-284 983.4 1104 50.1
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 1.9e-284 983.0 1106 49.9
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 4.2e-284 981.9 1095 48.6
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 9.4e-284 980.7 1121 49.6
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 1.2e-283 980.3 1102 49.7
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 2.4e-279 966.1 1096 48.4
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 2.9e-277 959.1 1095 49.6
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 1.5e-276 956.8 1101 47.6
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 2.0e-273 946.4 1098 48.1
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 3.4e-273 945.7 1096 47.3
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 4.4e-273 945.3 1110 49.0
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 1.3e-272 943.7 1048 48.6
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 2.8e-272 942.6 1110 48.8
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 9.1e-271 937.6 1101 46.9
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 2.0e-270 936.4 1098 49.0
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 2.3e-269 932.9 1023 50.0
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 5.0e-269 931.8 1093 47.8
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 8.6e-269 931.0 1096 47.4
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 3.3e-268 929.1 1095 47.2
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 5.6e-268 928.3 1096 48.4
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 2.1e-267 926.4 949 55.2
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 8.9e-266 921.0 1096 46.9
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 2.2e-264 916.4 1096 46.8
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 3.7e-264 915.6 1100 46.6
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 1.4e-263 913.7 1032 49.1
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 7.8e-262 907.9 1084 47.1
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 1.0e-261 907.5 1095 48.2
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 3.6e-259 899.0 898 52.9
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 8.0e-259 897.9 1119 45.5
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 5.2e-258 895.2 1117 45.5
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 4.4e-257 892.1 1098 46.4
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 7.5e-257 891.3 951 53.2
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 3.0e-253 879.4 1098 45.3
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 2.8e-251 872.8 1138 44.6
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 6.0e-246 855.1 1106 45.0
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 7.8e-246 854.7 1095 45.8
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 2.1e-243 846.7 1151 43.9
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 8.1e-235 818.1 866 50.9
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 1.8e-234 817.0 1128 44.0
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 8.4e-232 808.1 983 46.9
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 1.9e-231 807.0 966 46.5
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 7.1e-231 805.1 1127 41.7
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 3.2e-223 779.6 823 52.0
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 1.5e-220 770.8 886 47.6
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 7.1e-215 751.9 754 54.0
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 6.7e-205 718.8 972 42.3
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.5e-196 691.0 1085 41.1
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.3e-192 677.9 788 49.6
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 1.3e-176 624.8 746 47.3
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.5e-175 620.5 916 42.5
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 2.7e-174 617.1 747 46.2
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 1.5e-159 568.2 621 49.3
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 2.0e-156 557.8 1139 33.0
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 7.5e-156 555.8 735 44.5
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 2.9e-147 527.3 1335 30.4
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 3.1e-117 427.6 682 38.3
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 4.0e-117 427.2 459 52.3
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 3.8e-107 394.0 444 48.9
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 7.1e-98 363.2 1230 28.3
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 6.9e-93 346.7 340 53.8
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 4.9e-91 340.5 586 38.7
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 1.1e-90 339.3 276 63.0
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.0e-88 332.8 393 48.6
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 3.4e-84 317.8 346 51.2
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 1.3e-83 315.8 357 50.4
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 2.2e-83 315.1 295 57.6
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 1.3e-78 299.3 313 53.0
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 8.2e-78 296.6 351 47.6
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 2.4e-77 295.0 290 56.6
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 8.8e-64 250.0 350 41.4
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 2.2e-59 235.3 169 66.9
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 7.0e-53 213.8 478 34.5
Sabra06G0038400 Salix brachista HOM05D005711 ORTHO05D007125 1.5e-50 206.1 230 52.6
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 8.0e-49 200.3 205 54.1
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 2.3e-48 198.7 253 45.1
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 6.8e-48 197.2 172 56.4
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 2.0e-47 195.7 149 63.1
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.8e-45 189.1 396 34.6
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 1.5e-39 169.5 250 40.4
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 4.4e-39 167.9 142 57.7
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 4.9e-38 164.5 312 36.9
BcaC07g40361 Brassica carinata HOM05D005711 ORTHO05D007125 2.8e-33 148.7 138 57.2
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 2.5e-26 125.6 376 26.3
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 4.4e-23 114.8 99 54.5
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 4.4e-23 114.8 99 54.5
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 4.4e-23 114.8 99 54.5
Nitab4.5_0010669g0030 Nicotiana tabacum HOM05D005711 ORTHO05D007125 7.3e-18 97.4 161 42.2
FvH4_7g07941 Fragaria vesca HOM05D005711 ORTHO05D007125 3.6e-17 95.1 137 46.7
SalBow4G0785 Salvia bowleyana HOM05D005711 ORTHO05D007125 1.2e-15 90.1 137 40.9
Rhsim03G0016400 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.2e-14 85.9 82 56.1
MCO09G818 Micromonas commoda HOM05D005711 ORTHO05D007125 2.1e-12 79.3 433 23.1
CBR_g41430 Chara braunii HOM05D000019 ORTHO05D000048 8.6e-11 73.9 235 24.3
SEGI_21308 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 4.3e-10 71.6 86 40.7
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 4.7e-09 68.2 62 51.6
Hma1.2p1_0247F.1_g101870 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 1.1e-08 67.0 96 42.7
FAN04G1389 Fragaria x ananassa HOM05D005711 ORTHO05D007125 3.8e-06 58.5 47 53.2
BolC4t25036H Brassica oleracea HOM05D005711 ORTHO05D040726 8.4e-06 57.4 112 37.5


User provided reference genes

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