Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g16720 Coffea canephora HOM05D005630 ORTHO05D006979 2.3e-75 285.8 150 100.0
CSS0013521 Camellia sinensis var. sinensis HOM05D005630 ORTHO05D006979 8.3e-54 214.2 127 81.1
Nitab4.5_0002880g0080 Nicotiana tabacum HOM05D005630 ORTHO05D006979 1.6e-52 209.9 126 77.8
Solyc02g084380.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 2.7e-52 209.1 127 78.0
Oeu028785.1 Olea europaea HOM05D005630 ORTHO05D006979 3.5e-52 208.8 150 73.3
Hma1.2p1_1164F.1_g262820 Hydrangea macrophylla HOM05D005630 ORTHO05D006979 6.0e-52 208.0 126 79.4
Peaxi162Scf00083g01117 Petunia axillaris HOM05D005630 ORTHO05D006979 6.0e-52 208.0 126 79.4
Nitab4.5_0000914g0010 Nicotiana tabacum HOM05D005630 ORTHO05D006979 7.8e-52 207.6 126 79.4
Rhsim03G0057400 Rhododendron simsii HOM05D005630 ORTHO05D006979 7.8e-52 207.6 118 83.1
HanXRQChr10g0314501 Helianthus annuus HOM05D005630 ORTHO05D006979 1.7e-51 206.5 127 74.8
CAN.G1505.19 Capsicum annuum HOM05D005630 ORTHO05D006979 3.9e-51 205.3 126 77.8
MSTRG.19630 Avicennia marina HOM05D005630 ORTHO05D006979 8.6e-51 204.1 126 77.0
Nitab4.5_0005975g0020 Nicotiana tabacum HOM05D005630 ORTHO05D006979 8.6e-51 204.1 128 75.8
Solyc05g054990.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 1.5e-50 203.4 110 86.4
Sopen05g033450 Solanum pennellii HOM05D005630 ORTHO05D006979 1.5e-50 203.4 110 86.4
PGSC0003DMG400023408 Solanum tuberosum HOM05D005630 ORTHO05D006979 1.9e-50 203.0 150 72.7
Cfa020874 Carpinus fangiana HOM05D005630 ORTHO05D006979 2.5e-50 202.6 151 72.8
Prupe.7G253200 Prunus persica HOM05D005630 ORTHO05D006979 2.5e-50 202.6 147 76.9
Sopen02g029090 Solanum pennellii HOM05D005630 ORTHO05D006979 2.5e-50 202.6 127 76.4
CANSAT11G0524 Cannabis sativa HOM05D005630 ORTHO05D006979 4.3e-50 201.8 128 77.3
Actinidia03956 Actinidia chinensis HOM05D005630 ORTHO05D006979 5.6e-50 201.4 145 73.8
Nitab4.5_0003965g0050 Nicotiana tabacum HOM05D005630 ORTHO05D006979 5.6e-50 201.4 126 77.0
TAR383G0582 Trochodendron aralioides HOM05D005630 ORTHO05D006979 1.2e-49 200.3 128 75.8
CiPaw.04G061600 Carya illinoinensis HOM05D005630 ORTHO05D006979 2.8e-49 199.1 128 75.8
Prupe.3G048400 Prunus persica HOM05D005630 ORTHO05D006979 2.8e-49 199.1 149 74.5
Haze_19305 Corylus avellana HOM05D005630 ORTHO05D006979 4.7e-49 198.4 132 75.0
Nn8g40117 Nelumbo nucifera HOM05D005630 ORTHO05D006979 6.2e-49 198.0 128 76.6
QL02p091555 Quercus lobata HOM05D005630 ORTHO05D006979 6.2e-49 198.0 127 75.6
TWI34G2008 Tripterygium wilfordii HOM05D005630 ORTHO05D006979 8.1e-49 197.6 128 75.0
CAN.G1465.11 Capsicum annuum HOM05D005630 ORTHO05D006979 1.1e-48 197.2 125 76.0
Sed0022514 Sechium edule HOM05D005630 ORTHO05D006979 4.0e-48 195.3 143 72.7
Lsat_1_v5_gn_5_90640 Lactuca sativa HOM05D005630 ORTHO05D006979 1.2e-47 193.7 151 72.8
ClCG10G005100 Citrullus lanatus HOM05D005630 ORTHO05D006979 1.5e-47 193.4 110 80.9
Sc08g0004950 Simmondsia chinensis HOM05D005630 ORTHO05D006979 1.5e-47 193.4 128 72.7
Duzib128G0941 Durio zibethinus HOM05D005630 ORTHO05D006979 3.4e-47 192.2 128 71.9
Potri.018G113200 Populus trichocarpa HOM05D005630 ORTHO05D006979 4.4e-47 191.8 155 62.6
Gohir.D05G282200 Gossypium hirsutum HOM05D005630 ORTHO05D006979 7.6e-47 191.0 113 80.5
Gorai.009G295600 Gossypium raimondii HOM05D005630 ORTHO05D006979 7.6e-47 191.0 113 80.5
Migut.J01281 Erythranthe guttata HOM05D005630 ORTHO05D006979 1.3e-46 190.3 127 71.7
Gohir.A05G280400 Gossypium hirsutum HOM05D005630 ORTHO05D006979 2.2e-46 189.5 113 79.6
Atru.chr7.200 Acer truncatum HOM05D005630 ORTHO05D006979 2.9e-46 189.1 145 66.2
Actinidia37787 Actinidia chinensis HOM05D005630 ORTHO05D006979 3.8e-46 188.7 121 74.4
MD02G1012200 Malus domestica HOM05D005630 ORTHO05D006979 3.8e-46 188.7 110 80.0
Eucgr.H01228 Eucalyptus grandis HOM05D005630 ORTHO05D006979 6.4e-46 188.0 128 70.3
vmacro07529 Vaccinium macrocarpon HOM05D005630 ORTHO05D006979 6.4e-46 188.0 100 86.0
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 1.1e-45 187.2 130 70.8
PGR142G4039 Punica granatum HOM05D005630 ORTHO05D006979 1.4e-45 186.8 110 77.3
RcHm_v2.0_Chr2g0086501 Rosa chinensis HOM05D005630 ORTHO05D006979 1.4e-45 186.8 110 78.2
Eucgr.H01921 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.9e-45 186.4 128 69.5
MD15G1158000 Malus domestica HOM05D005630 ORTHO05D006979 3.2e-45 185.7 112 78.6
Manes.03G015700 Manihot esculenta HOM05D005630 ORTHO05D006979 3.2e-45 185.7 110 77.3
COL.COLO4_35448 Corchorus olitorius HOM05D000321 ORTHO05D000204 4.2e-45 185.3 110 77.3
MELO3C014176.2 Cucumis melo HOM05D005630 ORTHO05D006979 5.4e-45 184.9 110 78.2
CsaV3_3G004770 Cucumis sativus L. HOM05D005630 ORTHO05D006979 9.3e-45 184.1 110 77.3
GSVIVG01001041001 Vitis vinifera HOM05D005630 ORTHO05D006979 1.2e-44 183.7 122 74.6
Lj3g0020108 Lotus japonicus HOM05D005630 ORTHO05D006979 4.6e-44 181.8 109 75.2
FvH4_1g01540 Fragaria vesca HOM05D005630 ORTHO05D006979 6.0e-44 181.4 110 75.5
FAN28G1107 Fragaria x ananassa HOM05D005630 ORTHO05D006979 7.8e-44 181.0 133 67.7
FAN26G1041 Fragaria x ananassa HOM05D005630 ORTHO05D006979 1.0e-43 180.6 110 74.5
SalBow1G1736 Salvia bowleyana HOM05D005630 ORTHO05D006979 1.7e-43 179.9 110 77.3
Ciclev10009802m.g Citrus clementina HOM05D005630 ORTHO05D006979 2.3e-43 179.5 127 69.3
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 3.0e-43 179.1 110 73.6
unitig_46.g18303 Utricularia gibba HOM05D005630 ORTHO05D006979 1.1e-42 177.2 121 71.1
EL10Ac4g09637 Beta vulgaris HOM05D005630 ORTHO05D006979 1.5e-42 176.8 128 67.2
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 1.9e-42 176.4 126 67.5
Lj2g0025219 Lotus japonicus HOM05D005630 ORTHO05D006979 2.5e-42 176.0 109 71.6
SGA_v2.0_scaffold336G49163 Striga asiatica HOM05D005630 ORTHO05D006979 7.3e-42 174.5 124 66.9
Thhalv10021733m.g Eutrema salsugineum HOM05D005630 ORTHO05D006979 9.6e-42 174.1 132 63.6
Glyma.01G008800 Glycine max HOM05D005630 ORTHO05D006979 1.6e-41 173.3 109 71.6
Aa31LG8G5570 Aethionema arabicum HOM05D005630 ORTHO05D006979 3.6e-41 172.2 127 64.6
AL3G32110 Arabidopsis lyrata HOM05D005630 ORTHO05D006979 3.6e-41 172.2 132 66.7
AT3G18760 Arabidopsis thaliana HOM05D005630 ORTHO05D006979 4.8e-41 171.8 102 76.5
BcaB06g25926 Brassica carinata HOM05D005630 ORTHO05D006979 4.8e-41 171.8 132 65.9
Lalb_Chr01g0020901 Lupinus albus HOM05D005630 ORTHO05D006979 4.8e-41 171.8 109 72.5
Psat3g037680 Pisum sativum HOM05D005630 ORTHO05D006979 4.8e-41 171.8 109 69.7
Phvul.004G170400 Phaseolus vulgaris HOM05D005630 ORTHO05D006979 6.2e-41 171.4 113 71.7
Glyma.16G077600 Glycine max HOM05D005630 ORTHO05D006979 8.1e-41 171.0 109 70.6
BcaB04g19003 Brassica carinata HOM05D005630 ORTHO05D006979 1.1e-40 170.6 132 63.6
BraA05t21929Z Brassica rapa HOM05D005630 ORTHO05D006979 1.1e-40 170.6 132 64.4
C03p49710 Brassica napus HOM05D005630 ORTHO05D006979 1.4e-40 170.2 133 63.2
Ca_08945_v3 Cicer arietinum L. HOM05D005630 ORTHO05D006979 1.4e-40 170.2 110 70.0
Sp3g16800 Schrenkiella parvula HOM05D005630 ORTHO05D006979 1.4e-40 170.2 132 64.4
arahy.Tifrunner.gnm1.ann1.N9H741 Arachis hypogaea HOM05D005630 ORTHO05D006979 1.8e-40 169.9 108 70.4
BcaC05g28577 Brassica carinata HOM05D005630 ORTHO05D006979 1.8e-40 169.9 132 64.4
A05p30870 Brassica napus HOM05D005630 ORTHO05D006979 1.8e-40 169.9 132 64.4
C05p46800 Brassica napus HOM05D005630 ORTHO05D006979 1.8e-40 169.9 132 64.4
BolC5t33410H Brassica oleracea HOM05D005630 ORTHO05D006979 1.8e-40 169.9 132 64.4
Carub.0003s1855 Capsella rubella HOM05D005630 ORTHO05D006979 1.8e-40 169.9 134 64.9
CARHR094150 Cardamine hirsuta HOM05D005630 ORTHO05D006979 1.8e-40 169.9 102 75.5
PSO210G6044 Papaver somniferum HOM05D005630 ORTHO05D006979 2.4e-40 169.5 130 66.2
THA.LOC104826572 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 2.4e-40 169.5 130 63.8
PSO210G0346 Papaver somniferum HOM05D005630 ORTHO05D006979 3.1e-40 169.1 130 66.2
BraA03t13240Z Brassica rapa HOM05D005630 ORTHO05D006979 4.0e-40 168.7 134 64.2
Dinv41416 Davidia involucrata HOM05D005630 ORTHO05D006979 5.3e-40 168.3 108 74.1
Oeu040774.1 Olea europaea HOM05D005630 ORTHO05D006979 5.3e-40 168.3 170 54.1
TPR.G21379 Trifolium pratense HOM05D005630 ORTHO05D006979 6.9e-40 167.9 128 64.1
Medtr7g103190 Medicago truncatula HOM05D005630 ORTHO05D006979 1.5e-39 166.8 129 61.2
Os01g0220300 Oryza sativa ssp. japonica HOM05D005630 ORTHO05D006979 1.5e-39 166.8 110 68.2
BolC3t17269H Brassica oleracea HOM05D005630 ORTHO05D006979 2.0e-39 166.4 133 61.7
THA.LOC104815401 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 2.0e-39 166.4 129 62.0
VMungo0464G1149 Vigna mungo HOM05D005630 ORTHO05D006979 3.4e-39 165.6 128 63.3
TPR.G31501 Trifolium pratense HOM05D005630 ORTHO05D006979 4.4e-39 165.2 126 64.3
Medtr6g088605 Medicago truncatula HOM05D005630 ORTHO05D006979 9.9e-39 164.1 115 65.2
FAN23G2038 Fragaria x ananassa HOM05D005630 ORTHO05D006979 2.9e-38 162.5 173 51.4
Zm00001eb119770 Zea mays HOM05D005630 ORTHO05D006979 1.4e-37 160.2 109 69.7
VMungo0464G1592 Vigna mungo HOM05D005630 ORTHO05D006979 4.2e-37 158.7 113 67.3
A03p40820 Brassica napus HOM05D005630 ORTHO05D006979 7.1e-37 157.9 133 60.2
Thecc.10G171800 Theobroma cacao HOM05D005630 ORTHO05D006979 9.3e-37 157.5 94 79.8
Psat5g026240 Pisum sativum HOM05D005630 ORTHO05D006979 1.2e-36 157.1 98 72.4
HPP92_008634 Vanilla planifolia HOM05D005630 ORTHO05D006979 2.1e-36 156.4 123 62.6
MBI07_g35858_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 1.5e-34 150.2 87 80.5
FAN19G2317 Fragaria x ananassa HOM05D005630 ORTHO05D006979 7.3e-34 147.9 133 59.4
unitig_48.g30288 Utricularia gibba HOM05D005630 ORTHO05D006979 8.1e-33 144.4 102 68.6
CDE02G3819 Ceratophyllum demersum HOM05D005630 ORTHO05D006979 1.8e-32 143.3 84 78.6
Ah.01g003710 Amaranthus hybridus HOM05D005630 ORTHO05D006979 9.0e-32 141.0 122 59.8
Pp3c3_21570 Physcomitrium patens HOM05D005630 ORTHO05D006979 3.9e-27 125.6 97 54.6
AagrBONN_evm.TU.Sc2ySwM_117.2919 Anthoceros agrestis HOM05D005630 ORTHO05D006979 9.6e-26 120.9 101 54.5
Eucgr.B02192 Eucalyptus grandis HOM05D005630 ORTHO05D006979 8.1e-25 117.9 78 66.7
SMO146G0230 Selaginella moellendorffii HOM05D005630 ORTHO05D006979 4.0e-24 115.5 121 46.3
Lj7A451T27 Lonicera japonica HOM05D005630 ORTHO05D006979 5.8e-23 111.7 61 83.6
Mapoly0179s0002 Marchantia polymorpha HOM05D005630 ORTHO05D006979 2.9e-22 109.4 97 52.6
SGA_v2.0_scaffold416G51224 Striga asiatica HOM05D005630 ORTHO05D006979 2.1e-20 103.2 61 75.4
AUR62001080 Chenopodium quinoa HOM05D005630 ORTHO05D006979 8.7e-19 97.8 61 73.8
CBR_g37184 Chara braunii HOM05D005630 ORTHO05D006979 1.1e-18 97.4 98 49.0
AUR62004880 Chenopodium quinoa HOM05D005630 ORTHO05D006979 1.1e-16 90.9 61 68.9
Cpa.g.sc20.36 Carica papaya HOM05D005630 ORTHO05D006979 5.3e-16 88.6 89 55.1
Eucgr.L01073 Eucalyptus grandis HOM05D005630 ORTHO05D006979 6.9e-16 88.2 68 64.7
Nn2g11495 Nelumbo nucifera HOM05D005630 ORTHO05D006979 1.2e-15 87.4 64 68.8
ATR1096G006 Amborella trichopoda HOM05D005630 ORTHO05D006979 2.6e-15 86.3 65 61.5
MD16G1239100 Malus domestica HOM05D005630 ORTHO05D006979 1.7e-14 83.6 57 66.7
MBI07_g26347_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 2.2e-14 83.2 85 63.5
SEGI_16423 Sequoiadendron giganteum HOM05D005630 ORTHO05D006979 2.9e-14 82.8 85 47.1
TPR.G10852 Trifolium pratense HOM05D005630 ORTHO05D006979 2.7e-12 76.3 49 73.5
SalBow1G6627 Salvia bowleyana HOM05D005630 ORTHO05D006979 1.5e-10 70.5 44 72.7
AUR62039003 Chenopodium quinoa HOM05D005630 ORTHO05D006979 2.8e-09 66.2 48 60.4
MCO04G088 Micromonas commoda HOM05D005630 ORTHO05D006979 1.8e-08 63.5 114 28.1
Cre12.g558000 Chlamydomonas reinhardtii HOM05D005630 ORTHO05D006979 1.2e-07 60.8 96 34.4
Medtr5g037160 Medicago truncatula HOM05D005630 ORTHO05D000782 2.2e-06 56.6 34 70.6


User provided reference genes

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