Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 4.2e-113 411.4 211 100.0
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 2.3e-50 203.0 208 57.7
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.3e-50 203.0 214 56.1
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 1.1e-49 200.7 209 54.1
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 1.5e-49 200.3 211 55.9
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.9e-49 199.9 213 56.8
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 4.1e-47 192.2 230 52.2
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 8.4e-45 184.5 187 54.5
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 2.5e-44 183.0 209 52.6
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 2.1e-43 179.9 217 50.7
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 6.1e-43 178.3 214 51.4
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 6.1e-43 178.3 215 50.7
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 7.9e-43 177.9 192 54.2
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 7.9e-43 177.9 204 54.9
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.3e-42 177.2 214 50.5
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 3.0e-42 176.0 212 50.0
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 3.9e-42 175.6 213 52.6
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 5.1e-42 175.3 207 49.8
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 8.7e-42 174.5 220 51.4
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.1e-41 174.1 210 49.5
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.5e-41 173.7 208 52.4
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.5e-41 173.7 216 50.0
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.5e-41 173.7 185 55.1
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 2.5e-41 172.9 191 51.8
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 4.3e-41 172.2 197 51.8
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 7.4e-41 171.4 220 48.2
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.3e-40 170.6 211 50.2
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 1.3e-40 170.6 202 49.0
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.2e-40 169.9 221 52.0
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 2.2e-40 169.9 185 54.1
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.8e-40 169.5 181 52.5
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.8e-40 169.5 222 51.8
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 2.8e-40 169.5 212 50.5
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 3.7e-40 169.1 193 53.9
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.7e-40 169.1 222 51.8
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 6.3e-40 168.3 205 51.2
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 8.2e-40 167.9 210 49.5
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 3.1e-39 166.0 211 47.9
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 4.1e-39 165.6 188 51.6
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 4.1e-39 165.6 194 49.0
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.3e-39 165.2 210 49.0
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 5.3e-39 165.2 191 51.3
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.5e-38 163.7 223 45.7
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 2.6e-38 162.9 190 51.6
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 4.5e-38 162.2 218 50.5
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.5e-38 162.2 218 50.5
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.5e-38 162.2 218 50.5
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.9e-38 161.8 214 46.7
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.9e-38 161.8 214 46.7
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 7.7e-38 161.4 187 54.0
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 7.7e-38 161.4 178 56.2
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 1.7e-37 160.2 222 49.1
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.2e-37 159.8 214 46.3
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 2.2e-37 159.8 213 46.9
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.9e-37 159.5 213 47.9
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 5.0e-37 158.7 187 50.8
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.5e-37 158.3 214 48.6
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.1e-36 157.5 196 48.0
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.9e-36 156.8 205 49.3
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 2.5e-36 156.4 207 47.8
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 4.2e-36 155.6 218 46.8
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.5e-36 155.2 214 48.6
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 7.2e-36 154.8 188 47.9
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 9.4e-36 154.5 214 46.7
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 7.9e-35 151.4 205 45.9
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 1.0e-34 151.0 195 48.2
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.4e-34 150.6 231 43.3
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 1.8e-34 150.2 213 47.9
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 3.9e-34 149.1 191 51.8
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 3.9e-34 149.1 223 44.4
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 8.8e-34 147.9 213 47.4
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.1e-33 147.5 220 44.5
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.5e-33 146.4 184 45.7
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 7.4e-33 144.8 186 50.0
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 7.4e-33 144.8 205 44.4
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 7.4e-33 144.8 215 46.5
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 9.7e-33 144.4 182 47.8
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.3e-32 144.1 200 43.0
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.3e-32 144.1 211 46.4
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 6.3e-32 141.7 209 45.0
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 8.2e-32 141.4 186 45.7
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.8e-31 140.2 193 46.6
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.8e-31 140.2 193 46.6
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 3.1e-31 139.4 196 44.4
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 4.1e-31 139.0 206 44.7
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.1e-31 139.0 163 47.9
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 9.1e-31 137.9 221 42.5
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 9.1e-31 137.9 219 43.4
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.2e-30 137.5 249 39.8
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.2e-30 137.5 215 39.5
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.5e-30 137.1 122 59.8
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 2.0e-30 136.7 213 46.9
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 4.5e-30 135.6 219 42.5
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 5.9e-30 135.2 216 46.8
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.3e-29 134.0 220 41.4
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 1.3e-29 134.0 210 41.4
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 2.2e-29 133.3 211 41.2
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 2.2e-29 133.3 132 54.5
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.9e-29 132.9 206 41.7
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 3.8e-29 132.5 199 42.2
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 3.8e-29 132.5 199 41.7
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 5.0e-29 132.1 223 41.7
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 6.5e-29 131.7 219 45.2
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 8.5e-29 131.3 196 41.3
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.4e-28 130.6 196 40.8
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.9e-28 130.2 193 43.0
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.9e-28 130.2 184 41.8
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.5e-28 129.8 187 43.3
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 4.2e-28 129.0 212 43.4
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 7.2e-28 128.3 203 40.9
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 7.2e-28 128.3 203 40.9
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 7.2e-28 128.3 216 42.1
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 9.4e-28 127.9 198 41.9
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.2e-27 127.5 186 43.0
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.6e-27 127.1 205 42.9
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.1e-27 126.7 208 42.3
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 3.6e-27 125.9 205 44.4
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 3.6e-27 125.9 215 40.5
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 3.6e-27 125.9 189 41.8
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 4.7e-27 125.6 195 39.5
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 4.7e-27 125.6 221 39.4
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 4.7e-27 125.6 222 41.9
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 6.1e-27 125.2 210 41.9
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 7.9e-27 124.8 179 44.1
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.0e-26 124.4 216 39.8
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.0e-26 124.4 216 41.2
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 3.9e-26 122.5 145 45.5
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 3.9e-26 122.5 220 40.0
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 5.1e-26 122.1 220 40.5
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 6.7e-26 121.7 155 45.2
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 6.7e-26 121.7 196 41.8
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 8.8e-26 121.3 220 37.3
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 8.8e-26 121.3 220 37.3
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 8.8e-26 121.3 225 39.1
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 8.8e-26 121.3 209 38.3
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 1.1e-25 120.9 221 37.1
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 1.5e-25 120.6 201 38.3
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 2.0e-25 120.2 184 39.7
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 3.3e-25 119.4 198 40.9
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 3.3e-25 119.4 116 54.3
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 4.4e-25 119.0 192 40.1
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 4.4e-25 119.0 194 40.7
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 7.4e-25 118.2 172 44.8
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 9.7e-25 117.9 185 40.5
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.7e-24 117.1 175 40.0
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.1e-23 114.4 197 40.6
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 1.1e-23 114.4 191 38.2
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.4e-23 114.0 195 40.5
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 4.1e-23 112.5 202 42.1
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 4.1e-23 112.5 210 38.6
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 7.0e-23 111.7 159 42.8
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.5e-22 110.5 150 43.3
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.0e-21 107.8 212 37.7
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.0e-21 107.8 184 44.0
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 1.7e-21 107.1 186 38.7
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 1.9e-20 103.6 142 44.4
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.2e-20 102.8 204 40.2
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 5.5e-20 102.1 175 39.4
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 2.1e-19 100.1 139 43.9
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.1e-19 100.1 194 38.1
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 3.6e-19 99.4 189 38.6
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.0e-17 93.6 193 38.3
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.2e-16 90.1 137 43.1
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 2.8e-16 89.7 191 35.6
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 6.3e-16 88.6 199 36.2
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 3.1e-15 86.3 194 34.5
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.1e-15 86.3 205 36.6
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 5.3e-15 85.5 194 34.5
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 7.0e-15 85.1 194 34.0
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 7.0e-15 85.1 195 34.9
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.0e-14 83.6 269 30.1
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.6e-14 83.2 117 42.7
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 4.5e-14 82.4 135 38.5
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 5.9e-14 82.0 195 34.4
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 5.9e-14 82.0 167 34.7
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.0e-13 81.3 200 34.0
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 3.8e-13 79.3 151 39.1
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 5.0e-13 79.0 71 59.2
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.9e-12 77.0 196 32.7
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.9e-12 77.0 173 32.9
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.1e-11 73.6 94 48.9
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.7e-11 72.4 104 47.1
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 9.8e-09 64.7 211 28.9
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 5.4e-07 58.9 106 38.7
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 2.0e-06 57.0 136 33.1


User provided reference genes

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