Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g16080 Coffea canephora HOM05D005758 ORTHO05D029051 2.7e-39 164.9 81 100.0
Cc05_g06590 Coffea canephora HOM05D005758 ORTHO05D029051 1.2e-23 112.8 76 77.6
PSO017G5675 Papaver somniferum HOM05D005758 ORTHO05D007218 9.8e-18 93.2 63 74.6
PSO063G6478 Papaver somniferum HOM05D005758 ORTHO05D007218 1.7e-17 92.4 63 73.0
Ciclev10023734m.g Citrus clementina HOM05D005758 ORTHO05D007218 3.7e-17 91.3 63 73.0
vmacro02660 Vaccinium macrocarpon HOM05D005758 ORTHO05D007218 3.7e-17 91.3 61 73.8
Solyc05g026140.4 Solanum lycopersicum HOM05D005758 ORTHO05D007218 4.9e-17 90.9 63 73.0
Sopen05g022350 Solanum pennellii HOM05D005758 ORTHO05D007218 4.9e-17 90.9 63 73.0
Cc04_g14920 Coffea canephora HOM05D005758 ORTHO05D007218 6.4e-17 90.5 63 74.6
MSTRG.21495 Avicennia marina HOM05D005758 ORTHO05D007218 8.3e-17 90.1 63 71.4
Nitab4.5_0000206g0090 Nicotiana tabacum HOM05D005758 ORTHO05D007218 1.1e-16 89.7 63 73.0
CANSAT35G0929 Cannabis sativa HOM05D005758 ORTHO05D007218 1.4e-16 89.4 63 73.0
Migut.D00424 Erythranthe guttata HOM05D005758 ORTHO05D007218 1.4e-16 89.4 63 71.4
Peaxi162Scf00854g00219 Petunia axillaris HOM05D005758 ORTHO05D007218 1.4e-16 89.4 64 71.9
Duzib138G0621 Durio zibethinus HOM05D005758 ORTHO05D007218 2.4e-16 88.6 63 69.8
CAN.G184.8 Capsicum annuum HOM05D005758 ORTHO05D007218 3.2e-16 88.2 63 71.4
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 3.2e-16 88.2 63 71.4
Eucgr.B01556 Eucalyptus grandis HOM05D005758 ORTHO05D007218 3.2e-16 88.2 63 69.8
Gohir.D07G219100 Gossypium hirsutum HOM05D005758 ORTHO05D007218 3.2e-16 88.2 63 71.4
Gorai.001G253600 Gossypium raimondii HOM05D005758 ORTHO05D007218 3.2e-16 88.2 63 71.4
PGR004G1596 Punica granatum HOM05D005758 ORTHO05D007218 5.4e-16 87.4 64 65.6
TWI12G1280 Tripterygium wilfordii HOM05D005758 ORTHO05D007218 5.4e-16 87.4 63 69.8
GSVIVG01028326001 Vitis vinifera HOM05D005758 ORTHO05D007218 5.4e-16 87.4 63 69.8
Cfa002421 Carpinus fangiana HOM05D005758 ORTHO05D007218 7.0e-16 87.0 63 69.8
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 7.0e-16 87.0 63 69.8
Aa31LG5G5730 Aethionema arabicum HOM05D005758 ORTHO05D007218 9.2e-16 86.7 63 68.3
Nn3g19650 Nelumbo nucifera HOM05D005758 ORTHO05D007218 9.2e-16 86.7 63 66.7
Thecc.01G258700 Theobroma cacao HOM05D005758 ORTHO05D007218 9.2e-16 86.7 63 69.8
TAR365G0290 Trochodendron aralioides HOM05D005758 ORTHO05D007218 9.2e-16 86.7 63 68.3
arahy.Tifrunner.gnm1.ann1.6W8MXB Arachis hypogaea HOM05D005758 ORTHO05D007218 1.2e-15 86.3 63 71.4
arahy.Tifrunner.gnm1.ann1.N9I7Q3 Arachis hypogaea HOM05D005758 ORTHO05D007218 1.2e-15 86.3 63 71.4
Gohir.A07G213000 Gossypium hirsutum HOM05D005758 ORTHO05D007218 1.6e-15 85.9 63 69.8
Atru.chr5.1673 Acer truncatum HOM05D005758 ORTHO05D007218 2.0e-15 85.5 63 66.7
Aqoxy2G03640 Aquilegia oxysepala HOM05D005758 ORTHO05D007218 2.0e-15 85.5 63 66.7
DCAR_012547 Daucus carota HOM05D005758 ORTHO05D007218 2.0e-15 85.5 63 65.1
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 2.0e-15 85.5 63 68.3
FAN24G1897 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.0e-15 85.5 63 68.3
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.0e-15 85.5 63 68.3
Potri.005G224000 Populus trichocarpa HOM05D005758 ORTHO05D007218 2.0e-15 85.5 63 68.3
ClCG09G007800 Citrullus lanatus HOM05D005758 ORTHO05D007218 2.7e-15 85.1 63 69.8
Duzib133G0949 Durio zibethinus HOM05D005758 ORTHO05D007218 2.7e-15 85.1 63 68.3
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.7e-15 85.1 63 68.3
RcHm_v2.0_Chr6g0288161 Rosa chinensis HOM05D005758 ORTHO05D007218 2.7e-15 85.1 63 68.3
TAR636G1025 Trochodendron aralioides HOM05D005758 ORTHO05D007218 2.7e-15 85.1 63 68.3
MELO3C015730.2 Cucumis melo HOM05D005758 ORTHO05D007218 3.5e-15 84.7 63 68.3
MBI07_g30496_MAGBIO Magnolia biondii HOM05D005758 ORTHO05D007218 3.5e-15 84.7 63 66.7
Lj1A66G58 Lonicera japonica HOM05D005758 ORTHO05D007218 4.6e-15 84.3 61 67.2
Sc24g0003140 Simmondsia chinensis HOM05D005758 ORTHO05D029051 4.6e-15 84.3 71 62.0
Rhsim13G0034500 Rhododendron simsii HOM05D005758 ORTHO05D007218 6.0e-15 84.0 63 66.7
THA.LOC104800871 Tarenaya hassleriana HOM05D005758 ORTHO05D007218 6.0e-15 84.0 63 66.7
AL4G26390 Arabidopsis lyrata HOM05D005758 ORTHO05D007218 7.8e-15 83.6 63 65.1
AT2G31190 Arabidopsis thaliana HOM05D005758 ORTHO05D007218 7.8e-15 83.6 63 65.1
Cpa.g.sc50.22 Carica papaya HOM05D005758 ORTHO05D007218 7.8e-15 83.6 63 66.7
Sp4g13680 Schrenkiella parvula HOM05D005758 ORTHO05D007218 7.8e-15 83.6 63 65.1
Hund09599 Selenicereus undatus HOM05D005758 ORTHO05D007218 7.8e-15 83.6 63 66.7
SGA_v2.0_scaffold1G00616 Striga asiatica HOM05D005758 ORTHO05D007218 7.8e-15 83.6 63 66.7
BcaB06g28429 Brassica carinata HOM05D005758 ORTHO05D007218 1.0e-14 83.2 63 65.1
A04p24020 Brassica napus HOM05D005758 ORTHO05D007218 1.0e-14 83.2 63 65.1
BraA04t17923Z Brassica rapa HOM05D005758 ORTHO05D007218 1.0e-14 83.2 63 65.1
CSS0001414 Camellia sinensis var. sinensis HOM05D005758 ORTHO05D007218 1.3e-14 82.8 63 68.3
CsaV3_7G027330 Cucumis sativus L. HOM05D005758 ORTHO05D007218 1.3e-14 82.8 63 66.7
Carub.0004s1247 Capsella rubella HOM05D005758 ORTHO05D007218 1.7e-14 82.4 63 65.1
Lsat_1_v5_gn_8_93000 Lactuca sativa HOM05D005758 ORTHO05D007218 1.7e-14 82.4 61 63.9
Manes.12G032100 Manihot esculenta HOM05D005758 ORTHO05D007218 1.7e-14 82.4 63 63.5
Sabra05G0172800 Salix brachista HOM05D005758 ORTHO05D007218 2.3e-14 82.0 63 65.1
BcaB06g28512 Brassica carinata HOM05D005758 ORTHO05D007218 3.0e-14 81.6 63 63.5
C04p60690 Brassica napus HOM05D005758 ORTHO05D007218 3.0e-14 81.6 63 63.5
BolC4t27558H Brassica oleracea HOM05D005758 ORTHO05D007218 3.0e-14 81.6 63 63.5
Lalb_Chr02g0152411 Lupinus albus HOM05D005758 ORTHO05D007218 3.0e-14 81.6 63 66.7
Thhalv10016683m.g Eutrema salsugineum HOM05D005758 ORTHO05D007218 3.9e-14 81.3 63 63.5
HPP92_026239 Vanilla planifolia HOM05D005758 ORTHO05D007218 3.9e-14 81.3 65 66.2
CDE03G0270 Ceratophyllum demersum HOM05D005758 ORTHO05D007218 5.0e-14 80.9 63 63.5
CiPaw.13G172300 Carya illinoinensis HOM05D005758 ORTHO05D007218 6.6e-14 80.5 63 63.5
HanXRQChr04g0112661 Helianthus annuus HOM05D005758 ORTHO05D007218 6.6e-14 80.5 61 62.3
Glyma.13G123400 Glycine max HOM05D005758 ORTHO05D007218 8.6e-14 80.1 63 65.1
MD10G1184300 Malus domestica HOM05D005758 ORTHO05D007218 8.6e-14 80.1 63 65.1
Phvul.001G160800 Phaseolus vulgaris HOM05D005758 ORTHO05D007218 8.6e-14 80.1 63 68.3
Prupe.8G224000 Prunus persica HOM05D005758 ORTHO05D007218 1.1e-13 79.7 63 61.9
Sed0010920 Sechium edule HOM05D005758 ORTHO05D007218 1.1e-13 79.7 63 65.1
ECA236G3842 Erigeron canadensis HOM05D005758 ORTHO05D007218 1.9e-13 79.0 61 60.7
HanXRQChr09g0254391 Helianthus annuus HOM05D005758 ORTHO05D007218 1.9e-13 79.0 63 61.9
SHI09784 Sapria himalayana HOM05D000105 ORTHO05D007218 2.5e-13 78.6 63 58.7
Phvul.007G193000 Phaseolus vulgaris HOM05D005758 ORTHO05D007218 3.3e-13 78.2 63 63.5
QL09p038696 Quercus lobata HOM05D005758 ORTHO05D007218 3.3e-13 78.2 63 61.9
QL09p049090 Quercus lobata HOM05D005758 ORTHO05D007218 3.3e-13 78.2 63 61.9
Ah.11g049730 Amaranthus hybridus HOM05D005758 ORTHO05D007218 4.3e-13 77.8 63 60.3
AUR62011874 Chenopodium quinoa HOM05D005758 ORTHO05D007218 4.3e-13 77.8 61 65.6
AUR62024718 Chenopodium quinoa HOM05D005758 ORTHO05D007218 4.3e-13 77.8 61 65.6
Glyma.03G163000 Glycine max HOM05D005758 ORTHO05D007218 4.3e-13 77.8 63 65.1
Glyma.19G164500 Glycine max HOM05D005758 ORTHO05D007218 4.3e-13 77.8 63 65.1
MBI10_g29590_MAGBIO Magnolia biondii HOM05D005758 ORTHO05D007218 5.6e-13 77.4 58 65.5
VMungo0720G1063 Vigna mungo HOM05D005758 ORTHO05D007218 5.6e-13 77.4 63 61.9
Lj5g0021558 Lotus japonicus HOM05D005758 ORTHO05D007218 7.3e-13 77.0 63 61.9
Ca_08672_v3 Cicer arietinum L. HOM05D005758 ORTHO05D007218 9.5e-13 76.6 65 60.0
Lsat_1_v5_gn_5_183400 Lactuca sativa HOM05D005758 ORTHO05D007218 9.5e-13 76.6 63 58.7
Lj1g0005369 Lotus japonicus HOM05D005758 ORTHO05D007218 1.6e-12 75.9 63 61.9
Psat3g057680 Pisum sativum HOM05D005758 ORTHO05D007218 1.6e-12 75.9 65 60.0
Zm00001eb077710 Zea mays HOM05D005758 ORTHO05D007218 3.6e-12 74.7 63 57.1
EL10Ac5g10402 Beta vulgaris HOM05D005758 ORTHO05D007218 4.7e-12 74.3 61 62.3
Os04g0517300 Oryza sativa ssp. japonica HOM05D005758 ORTHO05D007218 4.7e-12 74.3 71 52.1
TPR.G28632 Trifolium pratense HOM05D005758 ORTHO05D007218 4.7e-12 74.3 65 58.5
Medtr7g096920 Medicago truncatula HOM05D005758 ORTHO05D007218 1.1e-11 73.2 65 58.5
VMungo1383G3618 Vigna mungo HOM05D005758 ORTHO05D007218 1.1e-11 73.2 63 61.9
SEGI_10356 Sequoiadendron giganteum HOM05D005758 ORTHO05D007218 1.4e-11 72.8 61 60.7
Zm00001eb077720 Zea mays HOM05D005758 ORTHO05D007218 1.8e-11 72.4 63 55.6
ATR0736G118 Amborella trichopoda HOM05D005758 ORTHO05D007218 4.0e-11 71.2 63 58.7
SMO364G0160 Selaginella moellendorffii HOM05D005758 ORTHO05D007218 8.9e-11 70.1 63 52.4
ECA248G1569 Erigeron canadensis HOM05D005758 ORTHO05D007218 4.4e-10 67.8 63 55.6
MD05G1197700 Malus domestica HOM05D005758 ORTHO05D007218 7.5e-10 67.0 63 57.1
AagrBONN_evm.TU.Sc2ySwM_344.1590 Anthoceros agrestis HOM05D006894 ORTHO05D007218 7.1e-08 60.5 59 47.5
Lsat_1_v5_gn_5_183361 Lactuca sativa HOM05D005758 ORTHO05D007218 7.1e-08 60.5 63 49.2
Pp3c16_18490 Physcomitrium patens HOM05D005758 ORTHO05D007218 3.5e-07 58.2 63 42.9
Mapoly0015s0205 Marchantia polymorpha HOM05D005758 ORTHO05D007218 1.0e-06 56.6 67 44.8


User provided reference genes

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