Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 7.3e-201 703.7 372 100.0
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.7e-149 533.1 368 73.6
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 4.6e-147 525.0 368 72.6
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 2.3e-146 522.7 369 73.2
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 2.4e-143 512.7 368 72.0
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 2.0e-142 509.6 368 69.8
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 1.1e-140 503.8 365 69.9
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 1.1e-140 503.8 368 69.8
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 1.9e-140 503.1 370 71.4
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 3.6e-139 498.8 408 66.4
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 6.1e-139 498.0 370 69.2
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 6.7e-138 494.6 370 69.5
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 8.8e-138 494.2 369 68.8
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 2.0e-137 493.0 353 72.2
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 2.6e-137 492.7 399 66.7
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.3e-136 490.3 416 64.4
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.7e-136 490.0 416 64.7
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 8.2e-136 487.6 372 67.7
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 1.1e-135 487.3 365 68.8
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 1.8e-135 486.5 373 68.1
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 2.4e-135 486.1 365 68.8
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 7.0e-135 484.6 372 67.7
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 1.2e-134 483.8 372 67.7
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 2.0e-134 483.0 411 65.7
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 2.0e-134 483.0 372 66.9
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 1.0e-133 480.7 385 65.7
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 1.0e-133 480.7 372 67.5
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 1.3e-133 480.3 372 66.4
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 3.8e-133 478.8 357 68.9
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 6.5e-133 478.0 376 66.5
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 6.5e-133 478.0 371 67.1
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 8.5e-133 477.6 372 66.1
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.9e-132 476.5 372 66.7
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 3.2e-132 475.7 369 67.2
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 4.2e-132 475.3 372 66.7
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 4.0e-130 468.8 376 64.1
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 8.8e-130 467.6 373 64.9
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 4.4e-129 465.3 410 61.7
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 4.4e-129 465.3 393 64.9
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 4.4e-129 465.3 368 65.5
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 3.7e-128 462.2 379 64.4
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 6.3e-128 461.5 416 60.6
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 6.3e-128 461.5 368 64.9
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 2.4e-127 459.5 386 63.5
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 2.4e-127 459.5 418 62.4
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 4.1e-127 458.8 374 63.9
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 5.3e-127 458.4 409 61.4
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 9.1e-127 457.6 356 66.3
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 4.5e-126 455.3 368 62.2
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 1.0e-125 454.1 370 64.3
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 1.0e-125 454.1 465 55.3
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 2.9e-125 452.6 326 70.9
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 6.5e-125 451.4 408 61.0
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 1.1e-124 450.7 366 64.8
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 1.5e-124 450.3 296 76.0
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.5e-124 450.3 366 64.5
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 1.9e-124 449.9 443 58.7
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 2.5e-124 449.5 368 63.3
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 9.4e-124 447.6 401 63.1
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 8.0e-123 444.5 391 59.3
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 4.0e-122 442.2 405 58.5
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 8.8e-122 441.0 368 62.8
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 1.5e-121 440.3 353 63.2
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 3.4e-121 439.1 341 65.4
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 7.5e-121 438.0 406 57.9
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 1.7e-120 436.8 357 64.1
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 2.2e-120 436.4 406 57.6
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 4.8e-120 435.3 362 63.3
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 6.3e-120 434.9 406 58.1
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 6.3e-120 434.9 400 59.0
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 8.3e-120 434.5 365 62.5
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 1.4e-119 433.7 379 60.9
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 1.8e-119 433.3 402 57.7
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 4.1e-119 432.2 400 57.2
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 3.5e-118 429.1 396 58.6
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 4.5e-118 428.7 400 56.8
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 5.9e-118 428.3 353 62.6
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 7.7e-118 427.9 394 59.1
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 7.7e-118 427.9 410 57.6
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 3.8e-117 425.6 408 56.9
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 5.0e-117 425.2 397 58.9
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 5.0e-117 425.2 397 58.9
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 1.1e-116 424.1 408 56.1
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 1.5e-116 423.7 390 59.7
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 9.5e-116 421.0 387 59.4
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 2.3e-114 416.4 365 60.0
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 4.0e-114 415.6 371 58.2
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 5.2e-114 415.2 321 65.4
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 6.8e-114 414.8 321 67.6
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 2.2e-112 409.8 368 59.8
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.7e-112 409.1 353 60.6
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 7.0e-111 404.8 370 58.1
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 4.5e-110 402.1 368 59.0
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 6.8e-106 388.3 378 55.3
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 5.7e-105 385.2 404 53.2
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 1.7e-104 383.6 380 55.8
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 2.9e-104 382.9 296 67.2
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 2.9e-104 382.9 296 67.2
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 3.7e-104 382.5 396 54.3
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 9.2e-103 377.9 373 55.5
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 3.5e-102 375.9 379 55.1
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.4e-97 359.4 358 54.7
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 7.5e-97 358.2 358 54.5
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 7.5e-97 358.2 358 54.7
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.9e-96 355.5 358 54.5
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 6.4e-96 355.1 358 54.5
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 5.4e-95 352.1 370 52.7
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 3.9e-93 345.9 270 65.9
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 1.1e-92 344.4 350 52.0
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 4.4e-89 332.4 365 50.7
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.7e-85 320.5 224 71.9
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 8.6e-85 318.2 405 46.9
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.6e-75 286.2 379 47.5
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 1.4e-74 284.3 345 45.8
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 2.1e-67 260.4 243 57.2
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 9.9e-65 251.5 226 58.4
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.1e-63 248.1 225 59.6
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 5.3e-58 229.2 255 50.2
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 1.9e-55 220.7 152 73.0
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.6e-51 207.6 150 68.0
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 8.2e-51 205.3 364 36.8
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 2.2e-48 197.2 143 70.6
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.0e-45 188.3 128 71.9
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 3.7e-43 179.9 124 74.2
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 5.9e-41 172.6 115 73.9
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 3.6e-38 163.3 180 52.2
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 2.1e-30 137.5 79 82.3
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 3.2e-23 113.6 73 75.3
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 2.8e-19 100.5 142 44.4
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 2.3e-13 80.9 65 64.6
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 5.2e-13 79.7 410 22.4
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 1.8e-10 71.2 72 51.4
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 5.5e-07 59.7 56 58.9
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 2.1e-06 57.8 68 52.9
CiPaw.13G018400 Carya illinoinensis HOM05D005841 ORTHO05D007132 4.7e-06 56.6 41 75.6


User provided reference genes

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