Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 7.0e-90 334.0 172 100.0
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 9.6e-39 164.1 174 55.7
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 1.1e-37 160.6 170 56.5
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 1.8e-37 159.8 170 54.1
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 9.0e-37 157.5 145 60.7
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.2e-36 157.1 167 55.1
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 7.6e-36 154.5 174 51.1
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 1.0e-35 154.1 189 50.3
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 2.2e-35 152.9 176 54.0
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 3.8e-35 152.1 177 49.7
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 4.9e-35 151.8 188 48.4
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 4.9e-35 151.8 165 52.7
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 1.4e-34 150.2 146 56.2
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 1.9e-34 149.8 169 54.4
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 3.2e-34 149.1 177 51.4
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 1.2e-33 147.1 138 56.5
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 1.2e-33 147.1 136 58.8
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.2e-33 147.1 168 52.4
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 2.1e-33 146.4 185 49.2
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 2.7e-33 146.0 143 53.8
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.5e-33 145.6 162 54.3
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 6.0e-33 144.8 143 57.3
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 6.0e-33 144.8 162 54.9
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.0e-32 144.1 162 53.7
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.0e-32 144.1 162 53.7
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.3e-32 143.7 175 51.4
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 1.3e-32 143.7 138 58.0
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 1.3e-32 143.7 162 54.3
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.3e-32 143.7 162 54.3
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 3.9e-32 142.1 206 48.5
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 5.1e-32 141.7 137 55.5
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 8.7e-32 141.0 163 52.1
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 1.5e-31 140.2 179 49.2
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 3.3e-31 139.0 191 47.6
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 7.4e-31 137.9 202 46.0
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 7.4e-31 137.9 167 50.9
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 9.7e-31 137.5 158 51.3
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 9.7e-31 137.5 197 47.7
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.3e-30 137.1 178 49.4
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 1.6e-30 136.7 194 45.9
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.6e-30 136.7 144 52.8
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 2.2e-30 136.3 161 47.2
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 2.2e-30 136.3 158 50.6
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 2.2e-30 136.3 154 55.8
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.8e-30 136.0 143 52.4
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 2.8e-30 136.0 143 52.4
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.8e-30 136.0 150 50.0
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 8.2e-30 134.4 194 44.3
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 1.4e-29 133.7 148 54.1
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 1.8e-29 133.3 166 50.0
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 2.4e-29 132.9 146 54.1
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 2.4e-29 132.9 172 48.8
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 2.4e-29 132.9 162 51.9
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 3.1e-29 132.5 162 51.2
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 5.3e-29 131.7 169 52.1
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 5.3e-29 131.7 148 52.0
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 9.0e-29 131.0 140 55.0
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 9.0e-29 131.0 165 53.3
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 2.0e-28 129.8 140 55.7
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 2.6e-28 129.4 162 50.0
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 3.4e-28 129.0 170 48.2
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 5.9e-28 128.3 142 54.2
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.3e-27 127.1 176 48.9
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 1.3e-27 127.1 159 50.3
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 1.3e-27 127.1 150 52.7
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 2.2e-27 126.3 161 47.2
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 2.2e-27 126.3 159 47.8
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 2.2e-27 126.3 131 56.5
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 2.9e-27 125.9 154 47.4
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 3.8e-27 125.6 180 43.9
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.0e-27 125.2 153 50.3
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 5.0e-27 125.2 148 51.4
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 8.5e-27 124.4 134 54.5
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 1.4e-26 123.6 94 70.2
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 1.9e-26 123.2 138 52.2
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 1.9e-26 123.2 140 52.1
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 9.3e-26 120.9 164 48.8
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 9.3e-26 120.9 122 55.7
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 1.2e-25 120.6 101 66.3
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 1.6e-25 120.2 182 46.7
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 2.1e-25 119.8 132 55.3
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 4.6e-25 118.6 183 46.4
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 6.1e-25 118.2 125 56.0
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 2.3e-24 116.3 157 46.5
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 2.3e-24 116.3 177 44.1
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 2.3e-24 116.3 171 45.6
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 3.0e-24 115.9 174 46.6
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 5.1e-24 115.2 162 48.1
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 8.7e-24 114.4 142 48.6
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.1e-23 114.0 175 44.0
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 1.9e-23 113.2 149 45.0
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.9e-23 113.2 152 46.1
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.9e-23 113.2 152 46.1
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 2.5e-23 112.8 166 42.2
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 2.5e-23 112.8 182 44.5
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 2.5e-23 112.8 133 49.6
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 5.7e-23 111.7 156 46.2
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 5.7e-23 111.7 82 68.3
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 1.3e-22 110.5 149 43.0
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 1.3e-22 110.5 149 43.0
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 1.7e-22 110.2 149 45.0
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 2.2e-22 109.8 149 45.0
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 2.8e-22 109.4 161 42.9
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 2.8e-22 109.4 130 49.2
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 6.3e-22 108.2 133 48.1
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 6.3e-22 108.2 132 47.7
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 8.2e-22 107.8 143 46.2
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.8e-21 106.7 187 41.2
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 2.4e-21 106.3 171 43.3
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 3.1e-21 105.9 157 43.9
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 4.1e-21 105.5 133 46.6
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 5.3e-21 105.1 134 50.0
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 5.3e-21 105.1 128 50.0
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 6.9e-21 104.8 135 46.7
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 6.9e-21 104.8 126 47.6
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.5e-20 103.6 134 49.3
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.5e-20 103.6 149 47.0
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 2.0e-20 103.2 128 49.2
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 2.0e-20 103.2 133 47.4
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 2.6e-20 102.8 131 47.3
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 2.6e-20 102.8 143 46.2
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 7.7e-20 101.3 151 43.0
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 1.3e-19 100.5 125 49.6
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 1.7e-19 100.1 121 49.6
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 2.2e-19 99.8 128 48.4
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 2.2e-19 99.8 128 48.4
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.9e-19 99.4 55 81.8
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 3.8e-19 99.0 74 66.2
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 5.0e-19 98.6 128 48.4
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 5.0e-19 98.6 128 48.4
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 5.0e-19 98.6 128 48.4
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 5.0e-19 98.6 114 52.6
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 6.5e-19 98.2 209 36.4
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 8.5e-19 97.8 129 47.3
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.1e-18 97.4 74 66.2
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.4e-18 97.1 85 60.0
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.4e-18 97.1 55 80.0
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 1.4e-18 97.1 129 45.7
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 1.9e-18 96.7 130 46.9
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 2.5e-18 96.3 158 42.4
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 5.5e-18 95.1 81 65.4
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 1.2e-17 94.0 124 46.0
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.2e-17 94.0 85 56.5
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 2.7e-17 92.8 81 64.2
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 3.9e-16 89.0 52 75.0
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 6.7e-16 88.2 71 59.2
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 6.7e-16 88.2 88 55.7
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.1e-15 87.4 90 53.3
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 2.0e-15 86.7 122 43.4
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 3.3e-15 85.9 128 43.0
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 4.4e-15 85.5 128 41.4
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 5.7e-15 85.1 43 83.7
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 9.7e-15 84.3 78 55.1
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 9.7e-15 84.3 78 55.1
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 6.3e-14 81.6 46 73.9
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 8.2e-14 81.3 77 50.6
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 3.4e-12 75.9 118 37.3
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 1.7e-11 73.6 146 35.6
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.1e-10 70.9 44 68.2
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 4.2e-10 68.9 56 57.1
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.6e-09 67.0 79 44.3
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.6e-09 65.9 59 50.8
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 4.7e-09 65.5 70 51.4
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.4e-08 63.9 37 70.3
Hund21288 Selenicereus undatus HOM05D000451 ORTHO05D000351 2.6e-07 59.7 87 37.9
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 4.4e-07 58.9 56 48.2
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 5.7e-07 58.5 37 62.2
QL07p024250 Quercus lobata HOM05D046221 ORTHO05D014310 4.8e-06 55.5 124 33.1


User provided reference genes

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