Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g15710 Coffea canephora HOM05D003641 ORTHO05D004915 4.8e-186 654.4 353 100.0
SalBow6G5303 Salvia bowleyana HOM05D003641 ORTHO05D004915 2.6e-155 552.4 353 76.8
CSS0018208 Camellia sinensis var. sinensis HOM05D003641 ORTHO05D004915 1.7e-154 549.7 353 81.9
PGSC0003DMG400011447 Solanum tuberosum HOM05D003641 ORTHO05D004915 2.9e-154 548.9 353 73.9
Nitab4.5_0007274g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 4.9e-154 548.1 353 74.8
MELO3C009611.2 Cucumis melo HOM05D003641 ORTHO05D004915 3.2e-153 545.4 353 78.5
CiPaw.09G029000 Carya illinoinensis HOM05D003641 ORTHO05D004915 4.1e-153 545.0 353 76.5
vmacro07894 Vaccinium macrocarpon HOM05D003641 ORTHO05D004915 7.0e-153 544.3 353 79.9
CsaV3_3G038670 Cucumis sativus L. HOM05D003641 ORTHO05D004915 9.2e-153 543.9 353 75.6
Sopen10g029550 Solanum pennellii HOM05D003641 ORTHO05D004915 1.6e-152 543.1 353 72.5
Solyc10g078930.2 Solanum lycopersicum HOM05D003641 ORTHO05D004915 3.5e-152 542.0 353 72.5
Atru.chr8.1148 Acer truncatum HOM05D003641 ORTHO05D004915 4.6e-152 541.6 355 74.9
CAN.G960.10 Capsicum annuum HOM05D003641 ORTHO05D004915 5.9e-152 541.2 355 73.2
Manes.09G037400 Manihot esculenta HOM05D003641 ORTHO05D004915 7.8e-152 540.8 353 73.4
TWI53G2154 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 7.8e-152 540.8 353 74.5
Dinv24057 Davidia involucrata HOM05D003641 ORTHO05D004915 1.3e-151 540.0 353 81.3
TWI74G1529 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 1.7e-151 539.7 353 74.2
Peaxi162Scf00258g00921 Petunia axillaris HOM05D003641 ORTHO05D004915 3.0e-151 538.9 353 72.2
Rhsim03G0004900 Rhododendron simsii HOM05D003641 ORTHO05D004915 3.0e-151 538.9 353 77.9
Lj2A365T90 Lonicera japonica HOM05D003641 ORTHO05D004915 3.9e-151 538.5 356 74.7
ClCG10G017650 Citrullus lanatus HOM05D003641 ORTHO05D004915 5.0e-151 538.1 353 74.2
Haze_20012 Corylus avellana HOM05D003641 ORTHO05D004915 5.0e-151 538.1 353 72.8
Cfa020150 Carpinus fangiana HOM05D003641 ORTHO05D004915 3.3e-150 535.4 353 72.0
PGR004G2452 Punica granatum HOM05D003641 ORTHO05D004915 4.3e-150 535.0 354 79.7
CANSAT64G0207 Cannabis sativa HOM05D003641 ORTHO05D004915 7.3e-150 534.3 359 75.5
SGA_v2.0_scaffold105G30499 Striga asiatica HOM05D003641 ORTHO05D004915 9.5e-150 533.9 356 72.8
Lju124A24T32 Lonicera japonica HOM05D003641 ORTHO05D004915 1.2e-149 533.5 356 75.3
Oeu063867.1 Olea europaea HOM05D003641 ORTHO05D004915 1.6e-149 533.1 353 72.0
COL.COLO4_29349 Corchorus olitorius HOM05D003641 ORTHO05D004915 2.1e-149 532.7 353 78.5
Potri.006G194400 Populus trichocarpa HOM05D003641 ORTHO05D004915 3.6e-149 531.9 353 72.8
SGA_v2.0_scaffold69G23056 Striga asiatica HOM05D003641 ORTHO05D004915 3.6e-149 531.9 355 79.4
Sabra16G0062900 Salix brachista HOM05D003641 ORTHO05D004915 6.2e-149 531.2 353 72.0
Eucgr.A02465 Eucalyptus grandis HOM05D003641 ORTHO05D004915 8.0e-149 530.8 358 78.8
Thhalv10021006m.g Eutrema salsugineum HOM05D003641 ORTHO05D004915 1.0e-148 530.4 360 75.6
Sabra06G0149100 Salix brachista HOM05D003641 ORTHO05D004915 1.0e-148 530.4 353 72.0
Duzib093G1627 Durio zibethinus HOM05D003641 ORTHO05D004915 1.4e-148 530.0 353 72.2
Manes.08G042800 Manihot esculenta HOM05D003641 ORTHO05D004915 2.3e-148 529.3 353 71.7
Sed0007356 Sechium edule HOM05D003641 ORTHO05D004915 3.1e-148 528.9 353 76.2
BcaB06g25550 Brassica carinata HOM05D003641 ORTHO05D004915 4.0e-148 528.5 353 71.4
Migut.J01850 Erythranthe guttata HOM05D003641 ORTHO05D004915 6.8e-148 527.7 357 78.2
Potri.016G060100 Populus trichocarpa HOM05D003641 ORTHO05D004915 6.8e-148 527.7 355 73.8
MSTRG.19915 Avicennia marina HOM05D003641 ORTHO05D004915 1.2e-147 526.9 355 75.8
Aa31sc80G90 Aethionema arabicum HOM05D003641 ORTHO05D004915 1.5e-147 526.6 360 68.6
RcHm_v2.0_Chr3g0479291 Rosa chinensis HOM05D003641 ORTHO05D004915 2.0e-147 526.2 353 78.2
Hma1.2p1_0676F.1_g201930 Hydrangea macrophylla HOM05D003641 ORTHO05D004915 3.4e-147 525.4 353 78.8
Thecc.05G174300 Theobroma cacao HOM05D003641 ORTHO05D004915 4.4e-147 525.0 353 72.8
TAR633G0428 Trochodendron aralioides HOM05D003641 ORTHO05D004915 4.4e-147 525.0 353 70.3
HanXRQChr01g0010591 Helianthus annuus HOM05D003641 ORTHO05D004915 7.5e-147 524.2 353 73.9
QL07p024293 Quercus lobata HOM05D003641 ORTHO05D004915 7.5e-147 524.2 365 77.8
Gorai.012G099600 Gossypium raimondii HOM05D003641 ORTHO05D004915 9.8e-147 523.9 355 71.0
C05p55760 Brassica napus HOM05D003641 ORTHO05D004915 1.7e-146 523.1 353 70.3
Gohir.A04G051900 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.7e-146 523.1 355 71.8
Oeu006209.1 Olea europaea HOM05D003641 ORTHO05D004915 1.7e-146 523.1 364 70.3
Cpa.g.sc85.60 Carica papaya HOM05D003641 ORTHO05D004915 2.9e-146 522.3 355 74.9
Gohir.D04G089500 Gossypium hirsutum HOM05D003641 ORTHO05D004915 2.9e-146 522.3 355 70.7
Hund24813 Selenicereus undatus HOM05D003641 ORTHO05D004915 2.9e-146 522.3 353 70.3
Lsat_1_v5_gn_5_164500 Lactuca sativa HOM05D003641 ORTHO05D004915 4.9e-146 521.5 347 76.1
Sp3g10280 Schrenkiella parvula HOM05D003641 ORTHO05D004915 6.4e-146 521.2 360 69.7
Duzib128G0491 Durio zibethinus HOM05D003641 ORTHO05D004915 8.3e-146 520.8 353 69.4
Ciclev10012043m.g Citrus clementina HOM05D003641 ORTHO05D004915 1.1e-145 520.4 361 69.8
THA.LOC104826776 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 1.9e-145 519.6 355 76.3
AL3G23660 Arabidopsis lyrata HOM05D003641 ORTHO05D004915 4.1e-145 518.5 361 67.3
AT3G12050 Arabidopsis thaliana HOM05D003641 ORTHO05D004915 4.1e-145 518.5 361 67.3
CARHR086620 Cardamine hirsuta HOM05D003641 ORTHO05D004915 5.4e-145 518.1 360 67.2
Aqoxy1G00140 Aquilegia oxysepala HOM05D003641 ORTHO05D004915 7.0e-145 517.7 356 74.7
FvH4_6g21990 Fragaria vesca HOM05D003641 ORTHO05D004915 1.6e-144 516.5 353 69.1
FAN05G2657 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.6e-144 516.5 353 74.5
FAN14G0097 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.6e-144 516.5 353 69.1
BraA05t22525Z Brassica rapa HOM05D003641 ORTHO05D004915 2.0e-144 516.2 353 69.4
DCAR_017036 Daucus carota HOM05D003641 ORTHO05D004915 3.5e-144 515.4 353 70.0
FAN09G3507 Fragaria x ananassa HOM05D003641 ORTHO05D004915 3.5e-144 515.4 353 74.2
MD14G1054700 Malus domestica HOM05D003641 ORTHO05D004915 3.5e-144 515.4 353 68.8
arahy.Tifrunner.gnm1.ann1.86C462 Arachis hypogaea HOM05D003641 ORTHO05D004915 4.6e-144 515.0 360 76.1
FAN02G1826 Fragaria x ananassa HOM05D003641 ORTHO05D004915 4.6e-144 515.0 353 71.7
TAR636G0728 Trochodendron aralioides HOM05D003641 ORTHO05D004915 4.6e-144 515.0 353 68.0
Prupe.7G080100 Prunus persica HOM05D003641 ORTHO05D004915 6.0e-144 514.6 354 76.0
A05p37290 Brassica napus HOM05D003641 ORTHO05D004915 7.8e-144 514.2 353 69.1
arahy.Tifrunner.gnm1.ann1.G8NWJQ Arachis hypogaea HOM05D003641 ORTHO05D004915 1.0e-143 513.8 360 75.6
Carub.0003s1139 Capsella rubella HOM05D003641 ORTHO05D004915 1.7e-143 513.1 363 74.1
MD12G1055300 Malus domestica HOM05D003641 ORTHO05D004915 1.7e-143 513.1 353 74.2
ECA248G0025 Erigeron canadensis HOM05D003641 ORTHO05D004915 3.9e-143 511.9 354 68.9
MBI19_g17419_MAGBIO Magnolia biondii HOM05D003641 ORTHO05D004915 5.0e-143 511.5 353 68.0
THA.LOC104809934 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 5.0e-143 511.5 353 74.2
CiPaw.10G025600 Carya illinoinensis HOM05D003641 ORTHO05D004915 1.5e-142 510.0 353 68.0
Nitab4.5_0001137g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 1.5e-142 510.0 353 71.1
AUR62011998 Chenopodium quinoa HOM05D003641 ORTHO05D004915 1.9e-142 509.6 354 68.4
EL10Ac3g06892 Beta vulgaris HOM05D003641 ORTHO05D004915 3.3e-142 508.8 353 70.8
Sc13g0002360 Simmondsia chinensis HOM05D003641 ORTHO05D004915 5.6e-142 508.1 353 68.0
AUR62015343 Chenopodium quinoa HOM05D003641 ORTHO05D004915 1.2e-141 506.9 353 68.3
Phvul.001G143800 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 1.6e-141 506.5 361 74.8
Lj5g0013930 Lotus japonicus HOM05D003641 ORTHO05D004915 3.6e-141 505.4 358 74.6
Glyma.03G146100 Glycine max HOM05D003641 ORTHO05D004915 4.7e-141 505.0 357 73.4
VMungo1383G0826 Vigna mungo HOM05D003641 ORTHO05D004915 6.2e-141 504.6 356 75.6
unitig_899.g15167 Utricularia gibba HOM05D003641 ORTHO05D004915 8.1e-141 504.2 354 71.5
Lalb_Chr18g0047991 Lupinus albus HOM05D003641 ORTHO05D004915 1.4e-140 503.4 358 75.1
BolC5t34243H Brassica oleracea HOM05D003641 ORTHO05D004915 3.1e-140 502.3 396 62.6
Lj1g0002782 Lotus japonicus HOM05D003641 ORTHO05D004915 6.8e-140 501.1 353 68.0
Glyma.19G149300 Glycine max HOM05D003641 ORTHO05D004915 8.9e-140 500.7 355 75.2
Nitab4.5_0000105g0210 Nicotiana tabacum HOM05D003641 ORTHO05D004915 2.6e-139 499.2 348 70.1
Medtr7g093500 Medicago truncatula HOM05D003641 ORTHO05D004915 3.4e-139 498.8 355 71.0
Psat3g067000 Pisum sativum HOM05D003641 ORTHO05D004915 3.4e-139 498.8 355 66.8
Nitab4.5_0002343g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 4.4e-139 498.4 355 69.6
Ca_08533_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 5.8e-139 498.0 359 66.3
TPR.G30301 Trifolium pratense HOM05D003641 ORTHO05D004915 3.2e-137 492.3 353 72.2
Ca_12045_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 7.1e-137 491.1 353 66.9
ATR0598G178 Amborella trichopoda HOM05D003641 ORTHO05D004915 1.0e-135 487.3 353 65.4
CDE05G2508 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 6.6e-135 484.6 353 64.3
PSO135G0566 Papaver somniferum HOM05D003641 ORTHO05D004915 8.6e-135 484.2 355 65.1
Glyma.09G109200 Glycine max HOM05D003641 ORTHO05D004915 1.6e-133 479.9 353 64.9
PSO724G0609 Papaver somniferum HOM05D003641 ORTHO05D004915 3.6e-133 478.8 358 64.5
CDE11G0833 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 4.7e-133 478.4 353 63.7
Hund19209 Selenicereus undatus HOM05D003641 ORTHO05D004915 2.3e-132 476.1 354 64.1
Ah.04g152830 Amaranthus hybridus HOM05D003641 ORTHO05D004915 4.0e-132 475.3 334 67.1
Glyma.02G171100 Glycine max HOM05D003641 ORTHO05D004915 1.5e-131 473.4 353 69.4
BcaC05g29294 Brassica carinata HOM05D003641 ORTHO05D004915 2.0e-131 473.0 353 65.2
Phvul.007G261100 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 1.3e-130 470.3 353 66.3
Os08g0464000 Oryza sativa ssp. japonica HOM05D003641 ORTHO05D004915 4.9e-130 468.4 359 69.1
unitig_746.g26803 Utricularia gibba HOM05D003641 ORTHO05D004915 1.4e-129 466.8 339 66.7
Medtr0136s0060 Medicago truncatula HOM05D003641 ORTHO05D004915 3.2e-129 465.7 354 61.9
VMungo0720G0815 Vigna mungo HOM05D003641 ORTHO05D004915 5.4e-129 464.9 353 65.4
HPP92_005766 Vanilla planifolia HOM05D003641 ORTHO05D004915 6.0e-128 461.5 364 60.7
Zm00001eb037640 Zea mays HOM05D003641 ORTHO05D004915 6.0e-128 461.5 354 63.0
HPP92_009321 Vanilla planifolia HOM05D003641 ORTHO05D004915 5.1e-127 458.4 361 60.9
SMO203G0054 Selaginella moellendorffii HOM05D003641 ORTHO05D004915 4.4e-123 445.3 353 59.8
Zm00001eb177410 Zea mays HOM05D003641 ORTHO05D004915 6.4e-122 441.4 356 59.3
Pp3c15_21400 Physcomitrium patens HOM05D003641 ORTHO05D004915 8.4e-122 441.0 353 58.6
Pp3c9_15400 Physcomitrium patens HOM05D003641 ORTHO05D004915 8.4e-122 441.0 353 58.4
Mapoly0109s0023 Marchantia polymorpha HOM05D003641 ORTHO05D004915 4.3e-118 428.7 353 59.2
AagrBONN_evm.TU.Sc2ySwM_344.3694 Anthoceros agrestis HOM05D003641 ORTHO05D004915 9.6e-118 427.6 353 58.1
Nn7g35972 Nelumbo nucifera HOM05D003641 ORTHO05D004915 9.6e-118 427.6 303 74.6
Nn7g35971 Nelumbo nucifera HOM05D003641 ORTHO05D004915 3.0e-111 406.0 299 65.9
Actinidia22049 Actinidia chinensis HOM05D003641 ORTHO05D004915 1.5e-110 403.7 354 61.9
Psat6g123080 Pisum sativum HOM05D003641 ORTHO05D004915 4.0e-108 395.6 296 68.6
Actinidia14376 Actinidia chinensis HOM05D003641 ORTHO05D004915 3.9e-103 379.0 276 73.9
TPR.G35793 Trifolium pratense HOM05D003641 ORTHO05D004915 6.9e-100 368.2 296 61.8
Gorai.012G099500 Gossypium raimondii HOM05D003641 ORTHO05D004915 2.2e-98 363.2 327 58.7
GSVIVG01033476001 Vitis vinifera HOM05D003641 ORTHO05D004915 1.1e-97 360.9 353 53.3
PRCOL_00005901 Prasinoderma coloniale HOM05D003641 ORTHO05D004915 5.3e-76 288.9 353 45.6
Gohir.D04G089400 Gossypium hirsutum HOM05D003641 ORTHO05D004915 7.2e-73 278.5 213 69.0
SEGI_39925 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 9.7e-70 268.1 272 55.1
BcaC09g48210 Brassica carinata HOM05D003641 ORTHO05D004915 7.7e-67 258.5 247 56.3
Gohir.A04G052026 Gossypium hirsutum HOM05D003641 ORTHO05D004915 3.6e-64 249.6 156 72.4
MCO07G236 Micromonas commoda HOM05D003641 ORTHO05D004915 1.3e-61 241.1 351 38.7
Cre03.g199300 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D004915 1.7e-58 230.7 356 43.5
Actinidia32404 Actinidia chinensis HOM05D003641 ORTHO05D004915 3.6e-56 223.0 115 89.6
Gohir.A04G052000 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.8e-55 220.7 175 67.4
arahy.Tifrunner.gnm1.ann1.VQQW03 Arachis hypogaea HOM05D003641 ORTHO05D004915 9.8e-54 214.9 126 78.6
arahy.Tifrunner.gnm1.ann1.EPN7T6 Arachis hypogaea HOM05D003641 ORTHO05D004915 6.3e-53 212.2 123 75.6
SEGI_05882 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 2.8e-32 143.7 159 48.4
Ca_31327_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 6.2e-32 142.5 85 71.8
Ca_14569_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 8.0e-32 142.1 85 71.8
Ca_20435_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.8e-31 141.0 85 70.6
Ca_09720_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 4.4e-30 136.3 85 68.2
HanXRQChr03g0083061 Helianthus annuus HOM05D003641 ORTHO05D004915 5.8e-30 136.0 138 50.0
Glyma.09G095600 Glycine max HOM05D003641 ORTHO05D004915 6.4e-29 132.5 132 66.7
Hund07686 Selenicereus undatus HOM05D003641 ORTHO05D011049 2.4e-28 130.6 188 40.4
arahy.Tifrunner.gnm1.ann1.20Y790 Arachis hypogaea HOM05D003641 ORTHO05D004915 7.0e-28 129.0 106 59.4
Dinv18651 Davidia involucrata HOM05D003641 ORTHO05D004915 4.7e-24 116.3 63 82.5
Dinv18648 Davidia involucrata HOM05D003641 ORTHO05D004915 5.2e-23 112.8 58 86.2
Dinv26263 Davidia involucrata HOM05D003641 ORTHO05D004915 5.2e-23 112.8 58 86.2
Ca_12039_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 6.4e-21 105.9 58 79.3
arahy.Tifrunner.gnm1.ann1.XYD4PT Arachis hypogaea HOM05D003641 ORTHO05D038899 5.4e-20 102.8 66 68.2
Hund07687 Selenicereus undatus HOM05D003641 ORTHO05D021213 9.2e-20 102.1 192 36.5
EL10Ac8g19334 Beta vulgaris HOM05D003641 ORTHO05D027013 3.5e-19 100.1 75 61.3
Nn8g39306 Nelumbo nucifera HOM05D003641 ORTHO05D004915 1.0e-18 98.6 60 75.0
CBR_g18730 Chara braunii HOM05D003641 ORTHO05D004915 8.6e-18 95.5 55 80.0
MCO11G399 Micromonas commoda HOM05D003641 ORTHO05D044219 4.3e-17 93.2 144 33.3
Ca_03268_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.6e-16 91.3 59 69.5
BolC1t05367H Brassica oleracea HOM05D003641 ORTHO05D038899 3.1e-15 87.0 49 71.4
TWI14G1341 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 2.0e-14 84.3 80 55.0
SGA_v2.0_scaffold200G41266 Striga asiatica HOM05D037212 ORTHO05D027013 2.6e-14 84.0 69 62.3
Ca_20824_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 7.6e-14 82.4 40 80.0
Cre08.g358539 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D044219 1.1e-12 78.6 149 30.2
CsaV3_5G015400 Cucumis sativus L. HOM05D003641 ORTHO05D004915 2.7e-11 73.9 50 66.0
VMungo0464G0530 Vigna mungo HOM05D003641 ORTHO05D004915 6.0e-11 72.8 64 50.0
PGSC0003DMG400035352 Solanum tuberosum HOM05D003641 ORTHO05D004915 1.7e-10 71.2 81 48.1
SGA_v2.0_scaffold196G40950 Striga asiatica HOM05D003641 ORTHO05D403144 5.1e-10 69.7 82 48.8
Peaxi162Scf00003g04539 Petunia axillaris HOM05D000312 ORTHO05D000221 1.5e-09 68.2 85 42.4
Sopen02g001110 Solanum pennellii HOM05D003641 ORTHO05D004915 3.1e-07 60.5 52 59.6
PRCOL_00004577 Prasinoderma coloniale HOM05D003641 ORTHO05D049026 5.8e-06 56.2 152 25.0


User provided reference genes

Program Settings