Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 3.2e-99 365.2 193 100.0
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 3.1e-86 322.0 194 86.1
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 2.6e-85 318.9 194 87.6
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 1.9e-83 312.8 194 85.6
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 9.3e-83 310.5 197 83.2
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 2.1e-82 309.3 197 83.8
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 2.7e-82 308.9 197 83.2
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 6.1e-82 307.8 193 85.5
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 6.1e-82 307.8 193 85.5
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 6.1e-82 307.8 193 85.5
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.8e-81 306.2 194 83.5
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 1.8e-81 306.2 193 85.0
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 2.3e-81 305.8 192 83.9
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 6.7e-81 304.3 197 82.2
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 3.3e-80 302.0 196 83.7
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 4.3e-80 301.6 193 83.9
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 4.3e-80 301.6 195 85.6
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 5.7e-80 301.2 191 82.2
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 7.4e-80 300.8 192 82.8
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 1.3e-79 300.1 196 82.7
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 1.6e-79 299.7 196 82.7
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 1.6e-79 299.7 190 83.7
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 2.2e-79 299.3 194 84.0
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 2.2e-79 299.3 194 84.0
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 2.2e-79 299.3 193 82.4
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 2.8e-79 298.9 196 83.2
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 2.8e-79 298.9 198 79.8
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 3.7e-79 298.5 190 83.2
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 3.7e-79 298.5 190 83.2
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 4.8e-79 298.1 193 81.9
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 8.2e-79 297.4 197 83.2
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 8.2e-79 297.4 194 83.5
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 8.2e-79 297.4 194 83.0
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 8.2e-79 297.4 195 83.1
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 8.2e-79 297.4 195 83.1
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 1.4e-78 296.6 195 83.6
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 1.4e-78 296.6 189 84.1
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 1.4e-78 296.6 193 81.3
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 1.8e-78 296.2 187 83.4
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 1.8e-78 296.2 194 83.0
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 2.4e-78 295.8 197 82.7
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 2.4e-78 295.8 197 80.7
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 3.1e-78 295.4 194 83.0
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 3.1e-78 295.4 190 82.1
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 3.1e-78 295.4 195 82.6
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 4.1e-78 295.0 197 82.2
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 4.1e-78 295.0 195 82.6
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 5.3e-78 294.7 189 82.5
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 5.3e-78 294.7 195 82.1
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 5.3e-78 294.7 194 82.5
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 6.9e-78 294.3 197 82.2
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 6.9e-78 294.3 198 81.8
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 6.9e-78 294.3 197 82.2
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 9.0e-78 293.9 191 83.2
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 1.5e-77 293.1 190 82.1
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 2.0e-77 292.7 192 80.2
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 4.5e-77 291.6 190 82.1
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 4.5e-77 291.6 195 81.0
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 4.5e-77 291.6 190 81.6
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 5.9e-77 291.2 193 81.9
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 7.7e-77 290.8 190 82.1
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 1.7e-76 289.7 190 82.6
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 2.2e-76 289.3 193 79.3
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 1.9e-75 286.2 189 81.0
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 2.5e-75 285.8 190 80.5
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 2.5e-75 285.8 194 82.0
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 2.5e-75 285.8 194 80.4
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 4.2e-75 285.0 188 81.4
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 4.2e-75 285.0 188 81.4
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 4.2e-75 285.0 188 81.4
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 4.2e-75 285.0 191 80.6
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 5.5e-75 284.6 185 82.2
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 5.5e-75 284.6 196 79.6
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 7.2e-75 284.3 188 81.4
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 9.4e-75 283.9 193 78.2
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 1.2e-74 283.5 193 77.7
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 1.6e-74 283.1 188 80.3
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 2.1e-74 282.7 191 79.6
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 2.1e-74 282.7 188 80.3
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 2.7e-74 282.3 188 81.4
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 3.6e-74 282.0 188 80.3
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 3.6e-74 282.0 188 80.3
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 4.6e-74 281.6 188 80.9
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 6.1e-74 281.2 188 79.8
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 3.3e-72 275.4 194 78.4
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 9.7e-72 273.9 199 75.9
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 1.3e-71 273.5 193 74.1
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 4.8e-71 271.6 189 77.2
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 4.8e-71 271.6 189 77.2
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 1.1e-70 270.4 174 82.2
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 5.3e-70 268.1 178 79.8
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 1.5e-69 266.5 190 77.4
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 7.7e-69 264.2 175 80.6
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 5.0e-68 261.5 197 71.1
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 2.5e-67 259.2 184 72.8
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 2.5e-67 259.2 188 75.5
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 3.2e-67 258.8 189 74.1
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 9.4e-67 257.3 183 71.6
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 1.6e-66 256.5 184 73.9
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 7.9e-66 254.2 195 73.8
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 8.8e-65 250.8 189 73.0
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 2.0e-64 249.6 182 74.2
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 8.2e-63 244.2 191 67.5
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 2.0e-61 239.6 201 65.2
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 5.9e-61 238.0 182 69.2
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 1.0e-60 237.3 211 63.0
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 1.0e-60 237.3 203 64.5
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 6.7e-57 224.6 136 86.0
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 2.6e-56 222.6 185 60.5
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.7e-55 219.9 193 63.7
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 3.7e-55 218.8 136 85.3
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 6.3e-55 218.0 192 67.7
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 5.0e-52 208.4 126 84.9
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 2.7e-50 202.6 194 61.3
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 1.8e-49 199.9 167 67.7
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.2e-45 187.2 198 56.6
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 2.0e-40 169.9 125 77.6
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 9.8e-40 167.5 101 80.2
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 1.7e-39 166.8 116 78.4
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 3.1e-38 162.5 122 71.3
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 1.0e-33 147.5 165 45.5
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 2.3e-28 129.8 135 57.0
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 1.5e-27 127.1 93 68.8
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 1.5e-27 127.1 104 67.3
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 1.4e-25 120.6 105 62.9
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 6.4e-23 111.7 82 73.2
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 1.6e-18 97.1 74 75.7
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 2.1e-18 96.7 171 32.7
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 2.3e-17 93.2 72 69.4
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 8.9e-17 91.3 161 34.2
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 3.4e-16 89.4 45 91.1
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 1.5e-11 73.9 62 59.7
SGA_v2.0_scaffold131G34402 Striga asiatica HOM05D005910 ORTHO05D007088 4.9e-07 58.9 54 66.7
SGA_v2.0_scaffold472G52090 Striga asiatica HOM05D005910 ORTHO05D007088 1.1e-06 57.8 54 66.7


User provided reference genes

Program Settings