Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g15510 Coffea canephora HOM05D006815 ORTHO05D008536 1.8e-159 565.8 280 100.0
Dinv24040 Davidia involucrata HOM05D006815 ORTHO05D008536 4.2e-92 342.0 273 62.6
Actinidia22067 Actinidia chinensis HOM05D006815 ORTHO05D008536 7.9e-91 337.8 275 62.2
Peaxi162Scf00463g00417 Petunia axillaris HOM05D006815 ORTHO05D008536 9.1e-87 324.3 277 59.2
PGSC0003DMG400001108 Solanum tuberosum HOM05D006815 ORTHO05D008536 7.7e-86 321.2 279 60.2
CiPaw.09G028400 Carya illinoinensis HOM05D006815 ORTHO05D008536 1.9e-84 316.6 272 58.5
Nitab4.5_0000009g0210 Nicotiana tabacum HOM05D006815 ORTHO05D008536 4.2e-84 315.5 276 58.7
Haze_20023 Corylus avellana HOM05D006815 ORTHO05D008536 7.2e-84 314.7 272 59.9
Sopen03g011500 Solanum pennellii HOM05D006815 ORTHO05D008536 9.4e-84 314.3 274 60.2
Haze_20020 Corylus avellana HOM05D006815 ORTHO05D008536 1.2e-83 313.9 272 59.9
CAN.G1314.3 Capsicum annuum HOM05D006815 ORTHO05D008536 1.6e-83 313.5 274 60.6
Solyc03g053020.4 Solanum lycopersicum HOM05D006815 ORTHO05D008536 4.7e-83 312.0 274 60.2
Oeu035701.1 Olea europaea HOM05D006815 ORTHO05D008536 1.5e-81 307.0 217 65.9
Cfa020143 Carpinus fangiana HOM05D006815 ORTHO05D008536 2.0e-81 306.6 272 58.5
Cpa.g.sc9.26 Carica papaya HOM05D006815 ORTHO05D008536 7.4e-81 304.7 273 58.6
Manes.08G042600 Manihot esculenta HOM05D006815 ORTHO05D008536 1.7e-80 303.5 273 59.3
TAR369G0232 Trochodendron aralioides HOM05D006815 ORTHO05D008536 6.3e-80 301.6 213 66.2
TWI53G1298 Tripterygium wilfordii HOM05D006815 ORTHO05D008536 8.2e-80 301.2 289 54.7
MSTRG.6498 Avicennia marina HOM05D006815 ORTHO05D008536 5.3e-79 298.5 245 59.2
Nitab4.5_0002339g0010 Nicotiana tabacum HOM05D006815 ORTHO05D008536 3.5e-78 295.8 275 56.7
QL07p024496 Quercus lobata HOM05D006815 ORTHO05D008536 5.9e-78 295.0 278 56.1
Sabra06G0149300 Salix brachista HOM05D006815 ORTHO05D008536 1.3e-77 293.9 223 63.2
Prupe.7G081100 Prunus persica HOM05D006815 ORTHO05D008536 3.8e-77 292.4 229 63.3
Duzib106G1458 Durio zibethinus HOM05D006815 ORTHO05D008536 3.2e-76 289.3 216 65.3
Potri.006G194600 Populus trichocarpa HOM05D006815 ORTHO05D008536 4.2e-76 288.9 236 60.6
GSVIVG01033467001 Vitis vinifera HOM05D006815 ORTHO05D008536 4.2e-76 288.9 189 70.9
Atru.chr8.1155 Acer truncatum HOM05D006815 ORTHO05D008536 5.5e-76 288.5 272 56.2
Migut.J01868 Erythranthe guttata HOM05D006815 ORTHO05D008536 7.2e-76 288.1 204 66.2
Thecc.05G174900 Theobroma cacao HOM05D006815 ORTHO05D008536 9.4e-76 287.7 283 56.9
PSO541G3114 Papaver somniferum HOM05D006815 ORTHO05D008536 1.2e-75 287.3 215 64.2
PSO675G7684 Papaver somniferum HOM05D006815 ORTHO05D008536 1.2e-75 287.3 220 62.7
Ciclev10012299m.g Citrus clementina HOM05D006815 ORTHO05D008536 3.6e-75 285.8 229 64.2
MD14G1054000 Malus domestica HOM05D006815 ORTHO05D008536 1.4e-74 283.9 223 61.0
Gohir.D01G124800 Gossypium hirsutum HOM05D006815 ORTHO05D008536 1.8e-74 283.5 215 64.2
Lsat_1_v5_gn_1_60941 Lactuca sativa HOM05D006815 ORTHO05D008536 3.9e-74 282.3 233 60.1
Gohir.A01G137200 Gossypium hirsutum HOM05D006815 ORTHO05D008536 6.7e-74 281.6 215 64.2
SalBow6G3515 Salvia bowleyana HOM05D006815 ORTHO05D008536 6.7e-74 281.6 240 58.8
Gorai.002G155400 Gossypium raimondii HOM05D006815 ORTHO05D008536 8.8e-74 281.2 215 63.7
Rhsim03G0035800 Rhododendron simsii HOM05D006815 ORTHO05D008536 1.1e-73 280.8 206 65.0
FvH4_6g21880 Fragaria vesca HOM05D006815 ORTHO05D008536 1.5e-73 280.4 278 55.0
FAN14G3951 Fragaria x ananassa HOM05D006815 ORTHO05D008536 1.5e-73 280.4 278 55.0
RcHm_v2.0_Chr3g0479231 Rosa chinensis HOM05D006815 ORTHO05D008536 2.0e-73 280.0 234 60.3
Sed0026757 Sechium edule HOM05D006815 ORTHO05D008536 5.7e-73 278.5 264 52.7
SGA_v2.0_scaffold57G20097 Striga asiatica HOM05D006815 ORTHO05D008536 5.7e-73 278.5 225 60.4
FAN09G4209 Fragaria x ananassa HOM05D006815 ORTHO05D008536 1.3e-72 277.3 215 64.2
CANSAT64G2825 Cannabis sativa HOM05D006815 ORTHO05D008536 2.8e-72 276.2 221 59.3
ClCG10G017680 Citrullus lanatus HOM05D006815 ORTHO05D008536 2.8e-72 276.2 208 61.1
HanXRQChr01g0024541 Helianthus annuus HOM05D006815 ORTHO05D008536 2.8e-72 276.2 202 64.9
AUR62012005 Chenopodium quinoa HOM05D006815 ORTHO05D008536 3.7e-72 275.8 219 59.8
Lj2C363G3 Lonicera japonica HOM05D006815 ORTHO05D008536 3.7e-72 275.8 237 59.5
PGR004G0977 Punica granatum HOM05D006815 ORTHO05D008536 3.7e-72 275.8 241 58.1
CsaV3_3G038620 Cucumis sativus L. HOM05D006815 ORTHO05D008536 4.8e-72 275.4 243 53.9
FAN02G2829 Fragaria x ananassa HOM05D006815 ORTHO05D008536 6.3e-72 275.0 281 54.1
Aqoxy2G00089 Aquilegia oxysepala HOM05D006815 ORTHO05D008536 8.2e-72 274.6 230 60.0
vmacro22625 Vaccinium macrocarpon HOM05D006815 ORTHO05D008536 8.2e-72 274.6 283 51.9
AUR62015334 Chenopodium quinoa HOM05D006815 ORTHO05D008536 1.1e-71 274.2 201 64.7
ECA248G0678 Erigeron canadensis HOM05D006815 ORTHO05D008536 2.4e-71 273.1 203 65.5
EL10Ac3g06884 Beta vulgaris HOM05D006815 ORTHO05D008536 3.1e-71 272.7 235 56.2
COL.COLO4_29358 Corchorus olitorius HOM05D006815 ORTHO05D008536 4.1e-71 272.3 207 65.2
DCAR_013671 Daucus carota HOM05D006815 ORTHO05D008536 5.3e-71 271.9 207 62.3
Eucgr.A02470 Eucalyptus grandis HOM05D006815 ORTHO05D008536 5.3e-71 271.9 210 62.9
MELO3C009608.2 Cucumis melo HOM05D006815 ORTHO05D008536 7.0e-71 271.6 213 58.7
Nn2g15741 Nelumbo nucifera HOM05D006815 ORTHO05D008536 4.5e-70 268.9 208 61.1
Thhalv10017089m.g Eutrema salsugineum HOM05D006815 ORTHO05D008536 2.1e-67 260.0 212 60.8
THA.LOC104824483 Tarenaya hassleriana HOM05D006815 ORTHO05D008536 2.1e-67 260.0 230 59.6
Hund19213 Selenicereus undatus HOM05D006815 ORTHO05D008536 3.6e-67 259.2 272 51.8
CSS0043811 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 3.0e-66 256.1 209 60.8
arahy.Tifrunner.gnm1.ann1.8HEC25 Arachis hypogaea HOM05D006815 ORTHO05D008536 8.8e-66 254.6 198 62.6
Lalb_Chr15g0079111 Lupinus albus HOM05D006815 ORTHO05D008536 1.2e-65 254.2 228 55.3
Sp4g24220 Schrenkiella parvula HOM05D006815 ORTHO05D008536 1.2e-65 254.2 212 59.4
CSS0019995 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 1.3e-64 250.8 209 58.9
arahy.Tifrunner.gnm1.ann1.G1RGZB Arachis hypogaea HOM05D006815 ORTHO05D008536 1.7e-64 250.4 198 62.1
BraA05t19258Z Brassica rapa HOM05D006815 ORTHO05D008536 2.2e-64 250.0 275 51.3
arahy.Tifrunner.gnm1.ann1.TZP9CN Arachis hypogaea HOM05D006815 ORTHO05D008536 3.7e-64 249.2 198 61.6
AL4G40310 Arabidopsis lyrata HOM05D006815 ORTHO05D008536 6.3e-64 248.4 212 59.4
AT2G41950 Arabidopsis thaliana HOM05D006815 ORTHO05D008536 1.1e-63 247.7 212 59.0
Carub.0004s2428 Capsella rubella HOM05D006815 ORTHO05D008536 1.1e-63 247.7 207 58.9
Lj1g0024455 Lotus japonicus HOM05D006815 ORTHO05D008536 1.1e-63 247.7 239 53.1
A05p02650 Brassica napus HOM05D006815 ORTHO05D008536 1.4e-63 247.3 275 50.9
Aa31LG1G24180 Aethionema arabicum HOM05D006815 ORTHO05D008536 1.8e-63 246.9 236 55.5
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 9.1e-63 244.6 240 51.2
BcaC02g12449 Brassica carinata HOM05D006815 ORTHO05D008536 1.1e-60 237.7 212 56.1
C04p03160 Brassica napus HOM05D006815 ORTHO05D008536 1.1e-60 237.7 212 56.1
BolC4t21956H Brassica oleracea HOM05D006815 ORTHO05D008536 1.1e-60 237.7 212 56.1
Phvul.001G144400 Phaseolus vulgaris HOM05D006815 ORTHO05D008536 1.5e-60 237.3 240 54.2
TPR.G13363 Trifolium pratense HOM05D006815 ORTHO05D008536 5.5e-60 235.3 228 52.2
Medtr7g093640 Medicago truncatula HOM05D006815 ORTHO05D008536 9.4e-60 234.6 215 54.0
Psat3g067520 Pisum sativum HOM05D006815 ORTHO05D008536 1.6e-59 233.8 223 52.9
VMungo1383G0507 Vigna mungo HOM05D006815 ORTHO05D008536 6.1e-59 231.9 236 51.3
Ca_08540_v3 Cicer arietinum L. HOM05D006815 ORTHO05D008536 1.4e-58 230.7 224 54.5
Glyma.03G146600 Glycine max HOM05D006815 ORTHO05D008536 4.0e-58 229.2 227 51.1
Glyma.19G149900 Glycine max HOM05D006815 ORTHO05D008536 8.8e-58 228.0 194 57.2
ATR0598G218 Amborella trichopoda HOM05D006815 ORTHO05D008536 4.4e-57 225.7 226 49.6
arahy.Tifrunner.gnm1.ann1.70NGGP Arachis hypogaea HOM05D006815 ORTHO05D008536 1.2e-54 217.6 202 55.4
CAN.G274.29 Capsicum annuum HOM05D006815 ORTHO05D008536 1.5e-52 210.7 200 54.5
CDE05G2500 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 3.6e-51 206.1 205 51.2
MBI19_g17427_MAGBIO Magnolia biondii HOM05D006815 ORTHO05D008536 6.1e-51 205.3 228 46.5
Sc13g0002390 Simmondsia chinensis HOM05D006815 ORTHO05D008536 7.5e-49 198.4 155 61.9
arahy.Tifrunner.gnm1.ann1.13XKQP Arachis hypogaea HOM05D006815 ORTHO05D008536 1.3e-48 197.6 198 54.5
HPP92_023458 Vanilla planifolia HOM05D006815 ORTHO05D008536 9.2e-47 191.4 235 43.0
HPP92_023474 Vanilla planifolia HOM05D006815 ORTHO05D008536 2.0e-46 190.3 229 44.1
MD12G1054600 Malus domestica HOM05D006815 ORTHO05D008536 1.6e-43 180.6 150 56.0
CARHR137070 Cardamine hirsuta HOM05D006815 ORTHO05D008536 1.8e-42 177.2 143 62.9
CDE11G0339 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 2.2e-32 143.7 140 53.6
Os03g0226700 Oryza sativa ssp. japonica HOM05D006815 ORTHO05D008536 2.9e-32 143.3 201 38.3
SEGI_30907 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 1.9e-31 140.6 203 39.4
BcaC03g14280 Brassica carinata HOM05D006815 ORTHO05D008536 1.7e-21 107.5 193 36.3
arahy.Tifrunner.gnm1.ann1.19RU7Q Arachis hypogaea HOM05D006815 ORTHO05D008536 5.2e-18 95.9 75 61.3
Pp3c12_7730 Physcomitrium patens HOM05D006815 ORTHO05D008536 1.5e-17 94.4 173 31.8
Mapoly0159s0012 Marchantia polymorpha HOM05D006815 ORTHO05D008536 3.4e-17 93.2 184 32.1
Zm00001eb009870 Zea mays HOM05D006815 ORTHO05D008536 4.9e-16 89.4 148 34.5
SEGI_06955 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 5.4e-15 85.9 142 35.9
Nn6g34990 Nelumbo nucifera HOM05D006815 ORTHO05D008536 1.2e-14 84.7 73 54.8
CARHR137080 Cardamine hirsuta HOM05D006815 ORTHO05D008536 3.5e-14 83.2 63 61.9
C02p16600 Brassica napus HOM05D006815 ORTHO05D008536 1.3e-11 74.7 71 54.9
BolC2t07761H Brassica oleracea HOM05D006815 ORTHO05D008536 8.1e-11 72.0 71 53.5


User provided reference genes

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