Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 1.6e-197 692.6 343 100.0
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 7.8e-133 477.6 334 69.8
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 3.9e-124 448.7 333 64.9
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 7.4e-123 444.5 360 61.1
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 9.6e-123 444.1 333 65.5
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 2.4e-121 439.5 326 65.6
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 1.5e-120 436.8 329 63.2
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 2.0e-120 436.4 332 64.8
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 3.4e-120 435.6 381 58.5
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 5.8e-120 434.9 339 63.1
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 3.8e-119 432.2 333 63.4
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 4.9e-119 431.8 333 63.7
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 6.4e-119 431.4 334 62.9
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 1.4e-118 430.3 328 64.0
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 1.9e-118 429.9 329 64.4
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 3.2e-118 429.1 335 62.7
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 4.2e-118 428.7 329 65.0
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 7.1e-118 427.9 384 58.3
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 2.1e-117 426.4 350 61.1
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 2.7e-117 426.0 360 60.0
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 1.3e-116 423.7 333 63.7
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 8.7e-116 421.0 329 62.9
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 8.7e-116 421.0 328 64.9
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 1.6e-114 416.8 328 62.8
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 2.4e-113 412.9 368 56.5
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 2.4e-113 412.9 368 56.5
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 3.1e-113 412.5 328 63.1
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 1.5e-112 410.2 331 61.9
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 2.6e-112 409.5 382 57.1
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 1.0e-111 407.5 274 70.4
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 2.2e-111 406.4 370 57.6
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 3.8e-111 405.6 278 70.5
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 8.4e-111 404.4 329 63.5
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 1.1e-110 404.1 329 61.4
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 7.1e-110 401.4 333 58.6
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 3.5e-109 399.1 314 61.5
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 3.9e-108 395.6 327 60.2
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 5.1e-108 395.2 329 59.3
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 8.7e-108 394.4 330 57.9
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 1.1e-107 394.0 307 63.5
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 2.5e-107 392.9 329 61.1
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 3.3e-107 392.5 335 60.9
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 3.3e-107 392.5 333 60.1
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 4.3e-107 392.1 333 59.8
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 5.7e-107 391.7 328 59.8
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 1.3e-106 390.6 331 59.8
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 2.8e-106 389.4 272 70.2
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 4.8e-106 388.7 328 59.5
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 4.5e-104 382.1 332 57.8
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 1.7e-103 380.2 328 57.6
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 2.9e-103 379.4 318 58.8
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 3.8e-103 379.0 334 58.1
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 3.8e-103 379.0 334 58.1
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 1.9e-102 376.7 328 58.8
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 1.8e-100 370.2 326 54.3
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.8e-100 370.2 328 56.4
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 2.3e-100 369.8 290 62.1
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 3.9e-100 369.0 282 63.8
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 3.3e-99 365.9 334 56.3
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 3.3e-99 365.9 275 65.1
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 1.3e-98 364.0 338 57.1
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 1.8e-97 360.1 339 56.6
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 5.3e-97 358.6 336 55.7
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 6.9e-97 358.2 331 55.9
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 9.1e-97 357.8 339 54.0
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.2e-96 357.5 310 59.4
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.2e-96 357.5 310 59.4
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 1.5e-96 357.1 337 55.2
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 1.5e-96 357.1 332 57.2
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 1.5e-96 357.1 342 56.7
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 3.4e-96 355.9 331 54.1
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 5.9e-96 355.1 338 56.2
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 1.0e-95 354.4 277 62.8
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 2.9e-95 352.8 327 55.4
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 8.5e-95 351.3 306 56.9
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 1.1e-94 350.9 341 54.5
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 5.5e-94 348.6 350 53.4
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 9.4e-94 347.8 321 57.3
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 2.7e-93 346.3 305 57.0
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 1.4e-92 344.0 349 53.6
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 1.8e-92 343.6 247 66.8
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 2.3e-92 343.2 349 54.2
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 5.7e-91 338.6 305 56.4
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 1.3e-90 337.4 332 54.5
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.5e-88 330.5 283 59.0
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 1.9e-86 323.6 230 67.8
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 2.5e-86 323.2 327 51.7
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 7.2e-86 321.6 227 66.1
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 1.2e-85 320.9 328 52.4
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 2.7e-85 319.7 300 55.3
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 1.4e-84 317.4 239 65.3
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 3.0e-84 316.2 232 65.9
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 3.1e-81 306.2 239 63.2
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 2.6e-80 303.1 203 70.0
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 1.9e-78 297.0 239 61.1
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 7.2e-78 295.0 225 67.1
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 3.6e-77 292.7 207 68.6
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 6.1e-77 292.0 331 48.6
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 1.8e-76 290.4 225 62.2
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 8.8e-76 288.1 244 58.6
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 1.7e-71 273.9 346 43.4
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 3.2e-70 269.6 341 45.5
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.8e-68 263.8 326 42.6
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 3.0e-68 263.1 338 44.7
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 3.1e-65 253.1 328 47.3
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 2.0e-64 250.4 180 66.7
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 9.5e-62 241.5 342 44.2
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 8.9e-60 235.0 150 70.0
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 3.4e-59 233.0 159 66.7
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 9.8e-59 231.5 261 48.7
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.1e-57 228.0 355 38.6
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.6e-56 224.2 343 37.9
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 8.6e-55 218.4 180 59.4
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 6.8e-52 208.8 195 51.3
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 9.2e-49 198.4 222 51.4
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 1.6e-48 197.6 298 40.3
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 3.5e-48 196.4 148 64.9
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 5.6e-46 189.1 141 66.7
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 9.8e-43 178.3 169 52.7
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 3.3e-38 163.3 177 50.3
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 1.2e-37 161.4 138 55.1
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 2.9e-34 150.2 98 69.4
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 1.9e-25 120.9 105 57.1
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 9.3e-25 118.6 101 58.4
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 6.0e-24 115.9 101 57.4
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 7.6e-19 99.0 89 55.1
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 3.8e-18 96.7 79 57.0
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 3.5e-16 90.1 88 52.3
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 2.1e-13 80.9 108 44.4
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.4e-12 78.2 66 51.5
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 1.1e-06 58.5 70 44.3
FAN19G0239 Fragaria x ananassa HOM05D006152 ORTHO05D045810 7.4e-06 55.8 33 72.7


User provided reference genes

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