Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g15330 Coffea canephora HOM05D001271 ORTHO05D001115 1.2e-48 196.1 93 100.0
Cc06_g15360 Coffea canephora HOM05D001271 ORTHO05D001115 4.4e-30 134.4 67 92.5
CSS0011442 Camellia sinensis var. sinensis HOM05D001271 ORTHO05D001115 1.9e-25 119.0 67 80.6
CSS0009857 Camellia sinensis var. sinensis HOM05D001271 ORTHO05D001115 2.5e-25 118.6 67 79.1
HanXRQChr10g0314601 Helianthus annuus HOM05D001271 ORTHO05D001115 3.6e-24 114.8 67 71.6
vmacro06097 Vaccinium macrocarpon HOM05D001271 ORTHO05D001115 3.6e-24 114.8 67 80.6
Dinv42890 Davidia involucrata HOM05D001271 ORTHO05D001115 3.1e-23 111.7 68 79.4
Nitab4.5_0005407g0010 Nicotiana tabacum HOM05D001271 ORTHO05D001115 5.2e-23 110.9 79 69.6
Actinidia38686 Actinidia chinensis HOM05D001271 ORTHO05D001115 6.8e-23 110.5 67 77.6
Nitab4.5_0001094g0100 Nicotiana tabacum HOM05D001271 ORTHO05D001115 6.8e-23 110.5 79 67.1
Peaxi162Scf00347g00623 Petunia axillaris HOM05D001271 ORTHO05D001115 1.2e-22 109.8 67 74.6
GSVIVG01003726001 Vitis vinifera HOM05D001271 ORTHO05D001115 1.2e-22 109.8 68 72.1
RhsimUnG0234500 Rhododendron simsii HOM05D001271 ORTHO05D001115 1.5e-22 109.4 66 75.8
Solyc07g005180.3 Solanum lycopersicum HOM05D001271 ORTHO05D001115 2.0e-22 109.0 67 73.1
Sopen07g001590 Solanum pennellii HOM05D001271 ORTHO05D001115 2.0e-22 109.0 67 73.1
PGSC0003DMG400003189 Solanum tuberosum HOM05D001271 ORTHO05D001115 2.0e-22 109.0 67 73.1
Lsat_1_v5_gn_8_61181 Lactuca sativa HOM05D001271 ORTHO05D001115 2.6e-22 108.6 68 66.2
CAN.G520.18 Capsicum annuum HOM05D001271 ORTHO05D001115 5.8e-22 107.5 67 71.6
HanXRQChr12g0357291 Helianthus annuus HOM05D001271 ORTHO05D001115 5.8e-22 107.5 67 70.1
CANSAT11G2549 Cannabis sativa HOM05D001271 ORTHO05D001115 1.7e-21 105.9 67 71.6
TWI63G0913 Tripterygium wilfordii HOM05D001271 ORTHO05D001115 2.2e-21 105.5 68 72.1
Potri.006G187800 Populus trichocarpa HOM05D001271 ORTHO05D001115 2.9e-21 105.1 67 68.7
Hma1.2p1_0028F.1_g017310 Hydrangea macrophylla HOM05D001271 ORTHO05D001115 3.7e-21 104.8 67 71.6
Oeu043490.1 Olea europaea HOM05D001271 ORTHO05D001115 3.7e-21 104.8 67 71.6
Sabra06G0143500 Salix brachista HOM05D003310 ORTHO05D003911 4.9e-21 104.4 67 68.7
Cpa.g.sc46.119 Carica papaya HOM05D001271 ORTHO05D001115 6.4e-21 104.0 67 71.6
Manes.14G141600 Manihot esculenta HOM05D001271 ORTHO05D001115 6.4e-21 104.0 67 71.6
TAR636G2133 Trochodendron aralioides HOM05D001271 ORTHO05D001115 6.4e-21 104.0 67 70.1
Sed0019175 Sechium edule HOM05D001271 ORTHO05D001115 8.4e-21 103.6 67 70.1
Manes.06G038200 Manihot esculenta HOM05D001271 ORTHO05D001115 1.1e-20 103.2 67 70.1
Oeu026543.2 Olea europaea HOM05D001271 ORTHO05D001115 1.1e-20 103.2 69 71.0
Oeu028812.1 Olea europaea HOM05D001271 ORTHO05D001115 1.1e-20 103.2 67 70.1
Potri.018G111100 Populus trichocarpa HOM05D001271 ORTHO05D001115 1.9e-20 102.4 67 64.2
MELO3C004488.2 Cucumis melo HOM05D001271 ORTHO05D001115 2.4e-20 102.1 67 73.1
CsaV3_2G003420 Cucumis sativus L. HOM05D001271 ORTHO05D001115 2.4e-20 102.1 67 73.1
THA.LOC104803895 Tarenaya hassleriana HOM05D001271 ORTHO05D001115 3.2e-20 101.7 67 67.2
CSS0034989 Camellia sinensis var. sinensis HOM05D001271 ORTHO05D001115 4.1e-20 101.3 65 70.8
Peaxi162Scf00295g00065 Petunia axillaris HOM05D001271 ORTHO05D001115 5.4e-20 100.9 67 70.1
MSTRG.26299 Avicennia marina HOM05D001271 ORTHO05D001115 9.2e-20 100.1 67 70.1
Thecc.09G034600 Theobroma cacao HOM05D001271 ORTHO05D001115 9.2e-20 100.1 67 71.6
TWI34G1980 Tripterygium wilfordii HOM05D001271 ORTHO05D001115 9.2e-20 100.1 67 70.1
CiPaw.15G173500 Carya illinoinensis HOM05D001271 ORTHO05D001115 1.6e-19 99.4 68 70.6
ClCG11G003550 Citrullus lanatus HOM05D001271 ORTHO05D001115 1.6e-19 99.4 69 68.1
Sed0010935 Sechium edule HOM05D001271 ORTHO05D001115 2.1e-19 99.0 67 67.2
MSTRG.6103 Avicennia marina HOM05D001271 ORTHO05D001115 2.7e-19 98.6 67 68.7
Duzib150G0294 Durio zibethinus HOM05D001271 ORTHO05D001115 2.7e-19 98.6 67 71.6
Atru.chr7.167 Acer truncatum HOM05D001271 ORTHO05D001115 3.5e-19 98.2 69 69.6
RcHm_v2.0_Chr2g0086111 Rosa chinensis HOM05D001271 ORTHO05D001115 3.5e-19 98.2 67 70.1
SalBow1G4776 Salvia bowleyana HOM05D001271 ORTHO05D001115 3.5e-19 98.2 67 70.1
Duzib187G0314 Durio zibethinus HOM05D001271 ORTHO05D001115 4.6e-19 97.8 67 70.1
HanXRQChr05g0137791 Helianthus annuus HOM05D001271 ORTHO05D001115 4.6e-19 97.8 68 66.2
PGR142G2195 Punica granatum HOM05D001271 ORTHO05D001115 4.6e-19 97.8 67 65.7
Lsat_1_v5_gn_5_91381 Lactuca sativa HOM05D001271 ORTHO05D001115 6.0e-19 97.4 67 64.2
Prupe.7G259500 Prunus persica HOM05D001271 ORTHO05D001115 6.0e-19 97.4 67 71.6
QL02p092509 Quercus lobata HOM05D001271 ORTHO05D001115 6.0e-19 97.4 67 68.7
Gohir.D07G029500 Gossypium hirsutum HOM05D001271 ORTHO05D001115 7.8e-19 97.1 67 67.2
Gorai.001G030700 Gossypium raimondii HOM05D001271 ORTHO05D001115 7.8e-19 97.1 67 67.2
MD02G1010700 Malus domestica HOM05D001271 ORTHO05D001115 7.8e-19 97.1 67 68.7
Sabra18G0093700 Salix brachista HOM05D001271 ORTHO05D001115 7.8e-19 97.1 67 65.7
Duzib168G1628 Durio zibethinus HOM05D001271 ORTHO05D001115 1.0e-18 96.7 67 70.1
Gohir.A07G025700 Gossypium hirsutum HOM05D001271 ORTHO05D001115 1.0e-18 96.7 67 68.7
MD15G1155600 Malus domestica HOM05D001271 ORTHO05D001115 1.3e-18 96.3 67 68.7
Nn4g26425 Nelumbo nucifera HOM05D001271 ORTHO05D001115 1.3e-18 96.3 66 71.2
Eucgr.C00379 Eucalyptus grandis HOM05D001271 ORTHO05D001115 1.7e-18 95.9 72 63.9
CiPaw.16G115400 Carya illinoinensis HOM05D001271 ORTHO05D001115 2.3e-18 95.5 69 71.0
Migut.J01316 Erythranthe guttata HOM05D001271 ORTHO05D001115 2.3e-18 95.5 67 65.7
THA.LOC104819912 Tarenaya hassleriana HOM05D001271 ORTHO05D001115 3.9e-18 94.7 67 64.2
C01p07920 Brassica napus HOM05D001271 ORTHO05D001115 8.6e-18 93.6 70 61.4
Sc08g0005010 Simmondsia chinensis HOM05D001271 ORTHO05D001115 8.6e-18 93.6 70 64.3
TAR625G1244 Trochodendron aralioides HOM05D001271 ORTHO05D001115 8.6e-18 93.6 67 68.7
AL7G21070 Arabidopsis lyrata HOM05D000737 ORTHO05D000581 1.1e-17 93.2 67 64.2
Carub.0007s0952 Capsella rubella HOM05D001271 ORTHO05D001115 1.1e-17 93.2 67 64.2
CARHR238920 Cardamine hirsuta HOM05D001271 ORTHO05D001115 1.1e-17 93.2 67 64.2
Lj9A495G53 Lonicera japonica HOM05D001271 ORTHO05D001115 1.5e-17 92.8 73 63.0
AT4G30996 Arabidopsis thaliana HOM05D001271 ORTHO05D001115 1.9e-17 92.4 67 64.2
Gohir.A08G251400 Gossypium hirsutum HOM05D001271 ORTHO05D001115 1.9e-17 92.4 68 69.1
Gorai.004G291300 Gossypium raimondii HOM05D001271 ORTHO05D001115 1.9e-17 92.4 68 69.1
PSO676G0004 Papaver somniferum HOM05D001271 ORTHO05D001115 1.9e-17 92.4 71 63.4
PSO384G0808 Papaver somniferum HOM05D001271 ORTHO05D001115 2.5e-17 92.0 70 64.3
PSO384G2663 Papaver somniferum HOM05D001271 ORTHO05D001115 2.5e-17 92.0 70 64.3
BolC3t21143H Brassica oleracea HOM05D001271 ORTHO05D001115 3.3e-17 91.7 67 59.7
FAN26G1061 Fragaria x ananassa HOM05D001271 ORTHO05D001115 3.3e-17 91.7 65 67.7
C03p88330 Brassica napus HOM05D001271 ORTHO05D001115 4.3e-17 91.3 67 59.7
Gohir.D08G272900 Gossypium hirsutum HOM05D001271 ORTHO05D001115 4.3e-17 91.3 68 67.6
BolC1t00779H Brassica oleracea HOM05D001271 ORTHO05D001115 5.6e-17 90.9 67 61.2
Aa31LG2G19300 Aethionema arabicum HOM05D001271 ORTHO05D001115 7.3e-17 90.5 67 62.7
unitig_60.g25523 Utricularia gibba HOM05D003204 ORTHO05D003566 7.3e-17 90.5 67 64.2
BcaNung03422 Brassica carinata HOM05D001271 ORTHO05D001115 9.6e-17 90.1 67 61.2
BraA08t33855Z Brassica rapa HOM05D001271 ORTHO05D001115 9.6e-17 90.1 67 59.7
CDE05G1025 Ceratophyllum demersum HOM05D001271 ORTHO05D001115 9.6e-17 90.1 67 56.7
SGA_v2.0_scaffold45G17053 Striga asiatica HOM05D001271 ORTHO05D001115 9.6e-17 90.1 67 64.2
Sp7g28890 Schrenkiella parvula HOM05D001271 ORTHO05D001115 1.2e-16 89.7 67 62.7
FvH4_1g01280 Fragaria vesca HOM05D001271 ORTHO05D001115 1.6e-16 89.4 64 67.2
FAN19G1074 Fragaria x ananassa HOM05D001271 ORTHO05D001115 1.6e-16 89.4 64 67.2
FAN23G0901 Fragaria x ananassa HOM05D001271 ORTHO05D001115 1.6e-16 89.4 64 67.2
C07p58380 Brassica napus HOM05D001271 ORTHO05D001115 2.1e-16 89.0 68 63.2
Hund21624 Selenicereus undatus HOM05D001271 ORTHO05D001115 2.1e-16 89.0 69 59.4
Thhalv10026395m.g Eutrema salsugineum HOM05D001271 ORTHO05D001115 2.8e-16 88.6 67 62.7
FAN28G0468 Fragaria x ananassa HOM05D001271 ORTHO05D001115 2.8e-16 88.6 64 65.6
BcaB03g12672 Brassica carinata HOM05D001271 ORTHO05D001115 3.6e-16 88.2 67 61.2
BcaC09g51889 Brassica carinata HOM05D000306 ORTHO05D000410 3.6e-16 88.2 67 59.7
A01p07160 Brassica napus HOM05D001271 ORTHO05D001115 3.6e-16 88.2 68 60.3
BraA01t00668Z Brassica rapa HOM05D001271 ORTHO05D001115 3.6e-16 88.2 68 60.3
BcaC01g01119 Brassica carinata HOM05D001271 ORTHO05D001115 4.7e-16 87.8 65 60.0
AT2G24290 Arabidopsis thaliana HOM05D001271 ORTHO05D001115 8.1e-16 87.0 68 63.2
arahy.Tifrunner.gnm1.ann1.LVI61E Arachis hypogaea HOM05D001271 ORTHO05D001115 8.1e-16 87.0 64 64.1
Carub.0004s0362 Capsella rubella HOM05D001271 ORTHO05D001115 8.1e-16 87.0 67 61.2
A08p18920 Brassica napus HOM05D001271 ORTHO05D001115 1.1e-15 86.7 67 58.2
Lj6g0024799 Lotus japonicus HOM05D001271 ORTHO05D001115 1.1e-15 86.7 69 56.5
ECA236G0455 Erigeron canadensis HOM05D001271 ORTHO05D001115 1.8e-15 85.9 68 60.3
MBI15_g09159_MAGBIO Magnolia biondii HOM05D001271 ORTHO05D001115 1.8e-15 85.9 71 59.2
arahy.Tifrunner.gnm1.ann1.ZMB1P7 Arachis hypogaea HOM05D001271 ORTHO05D001115 2.4e-15 85.5 64 62.5
EL10Ac9g22222 Beta vulgaris HOM05D001271 ORTHO05D001115 2.4e-15 85.5 68 57.4
TPR.G35881 Trifolium pratense HOM05D001271 ORTHO05D001115 2.4e-15 85.5 65 63.1
Lalb_Chr08g0233941 Lupinus albus HOM05D001271 ORTHO05D001115 3.1e-15 85.1 63 61.9
unitig_0.g515 Utricularia gibba HOM05D003204 ORTHO05D003566 3.1e-15 85.1 67 61.2
ECA234G3423 Erigeron canadensis HOM05D000737 ORTHO05D000581 4.0e-15 84.7 55 69.1
MBI14_g40712_MAGBIO Magnolia biondii HOM05D001271 ORTHO05D001115 4.0e-15 84.7 64 62.5
BcaNung01549 Brassica carinata HOM05D001271 ORTHO05D001115 6.8e-15 84.0 69 59.4
Glyma.15G206000 Glycine max HOM05D001271 ORTHO05D001115 1.5e-14 82.8 65 60.0
Ca_03814_v3 Cicer arietinum L. HOM05D001271 ORTHO05D001115 2.0e-14 82.4 64 60.9
Lalb_Chr11g0072751 Lupinus albus HOM05D001271 ORTHO05D001115 2.0e-14 82.4 63 60.3
Sp4g03290 Schrenkiella parvula HOM05D001271 ORTHO05D001115 2.0e-14 82.4 68 60.3
Aqoxy7G02780 Aquilegia oxysepala HOM05D001271 ORTHO05D001115 2.6e-14 82.0 72 54.2
Psat1g022280 Pisum sativum HOM05D001271 ORTHO05D001115 3.4e-14 81.6 63 60.3
DCAR_016297 Daucus carota HOM05D001271 ORTHO05D001115 4.4e-14 81.3 71 60.6
VMungo1309G1528 Vigna mungo HOM05D001271 ORTHO05D001115 5.8e-14 80.9 64 59.4
Aqoxy7G03474 Aquilegia oxysepala HOM05D001271 ORTHO05D001115 1.7e-13 79.3 69 53.6
CARHR117810 Cardamine hirsuta HOM05D001271 ORTHO05D001115 1.7e-13 79.3 67 53.7
Medtr2g450100 Medicago truncatula HOM05D001271 ORTHO05D001115 2.2e-13 79.0 63 55.6
Glyma.09G098800 Glycine max HOM05D001271 ORTHO05D001115 2.9e-13 78.6 64 57.8
Phvul.009G193900 Phaseolus vulgaris HOM05D001271 ORTHO05D001115 3.8e-13 78.2 64 57.8
AUR62011269 Chenopodium quinoa HOM05D001271 ORTHO05D001115 8.4e-13 77.0 62 61.3
Oeu050486.1 Olea europaea HOM05D001271 ORTHO05D001115 1.4e-12 76.3 65 58.5
SGA_v2.0_scaffold229G43364 Striga asiatica HOM05D001271 ORTHO05D001115 1.4e-12 76.3 61 60.7
BcaB04g18197 Brassica carinata HOM05D001271 ORTHO05D001115 9.3e-12 73.6 65 52.3
EL10Ac8g18843 Beta vulgaris HOM05D001271 ORTHO05D001115 1.2e-11 73.2 80 52.5
Os04g0501800 Oryza sativa ssp. japonica HOM05D001271 ORTHO05D001115 6.0e-11 70.9 84 46.4
Haze_19241 Corylus avellana HOM05D001271 ORTHO05D001115 3.9e-10 68.2 48 68.8
Migut.K00346 Erythranthe guttata HOM05D001271 ORTHO05D001115 3.9e-10 68.2 60 53.3
Zm00001eb425990 Zea mays HOM05D001271 ORTHO05D001115 3.9e-10 68.2 66 53.0
AUR62026988 Chenopodium quinoa HOM05D001271 ORTHO05D000009 7.3e-09 63.9 58 46.6
Gohir.A05G051000 Gossypium hirsutum HOM05D001271 ORTHO05D001115 7.3e-09 63.9 49 61.2
ATR1153G089 Amborella trichopoda HOM05D001271 ORTHO05D001115 2.4e-07 58.9 67 46.3
HPP92_018557 Vanilla planifolia HOM05D001271 ORTHO05D001115 1.2e-06 56.6 36 63.9


User provided reference genes

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