Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 2.2e-213 745.3 369 100.0
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 9.4e-116 421.0 298 71.1
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 2.3e-114 416.4 330 64.8
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 2.2e-112 409.8 367 59.9
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 2.8e-112 409.5 371 58.5
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 1.1e-111 407.5 361 59.3
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 3.1e-111 406.0 361 60.1
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 3.1e-111 406.0 410 56.6
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 5.3e-111 405.2 264 74.6
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 2.0e-110 403.3 376 57.7
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 5.9e-110 401.7 295 68.1
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 7.7e-110 401.4 267 74.2
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 7.7e-110 401.4 392 55.4
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 3.8e-109 399.1 372 57.8
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 5.0e-109 398.7 260 73.5
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 1.9e-108 396.7 261 72.0
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 2.1e-107 393.3 268 70.9
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 8.0e-107 391.3 256 74.6
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 1.0e-106 391.0 348 59.5
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 1.4e-106 390.6 256 74.6
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 1.8e-106 390.2 274 71.5
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 3.0e-106 389.4 354 59.6
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 3.0e-106 389.4 271 70.5
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 3.9e-106 389.0 317 62.5
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 3.9e-106 389.0 265 71.7
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 5.2e-106 388.7 358 58.7
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 1.5e-105 387.1 264 70.5
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 2.6e-105 386.3 354 59.6
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 3.3e-105 386.0 325 62.5
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 4.4e-105 385.6 256 73.4
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 5.7e-105 385.2 292 66.1
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 7.4e-105 384.8 264 70.8
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 7.4e-105 384.8 294 67.3
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 9.7e-105 384.4 269 69.5
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 2.8e-104 382.9 351 57.8
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 3.7e-104 382.5 275 68.4
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 4.8e-104 382.1 275 69.1
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 6.3e-104 381.7 260 69.6
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 6.3e-104 381.7 324 61.1
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 8.2e-104 381.3 256 70.7
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 1.4e-103 380.6 267 70.4
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 1.8e-103 380.2 299 64.9
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 2.4e-103 379.8 275 69.8
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 4.1e-103 379.0 269 68.0
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 7.0e-103 378.3 320 59.1
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 9.1e-103 377.9 256 73.4
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 9.1e-103 377.9 312 59.9
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 1.2e-102 377.5 257 72.0
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 1.6e-102 377.1 273 68.5
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.6e-102 377.1 294 66.0
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 1.6e-102 377.1 268 69.8
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 2.0e-102 376.7 271 69.4
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 2.0e-102 376.7 303 61.7
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 2.6e-102 376.3 272 69.1
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 2.6e-102 376.3 358 57.8
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 2.6e-102 376.3 290 66.2
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 7.7e-102 374.8 264 67.0
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.3e-101 374.0 290 65.9
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.3e-101 374.0 290 66.2
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 2.9e-101 372.9 358 57.5
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 8.5e-101 371.3 291 64.3
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.9e-100 370.2 256 70.3
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.9e-100 370.2 274 67.5
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 3.2e-100 369.4 256 69.9
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 4.2e-100 369.0 255 69.8
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 5.5e-100 368.6 258 70.2
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 7.2e-100 368.2 256 69.5
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 1.2e-99 367.5 339 60.5
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 1.6e-99 367.1 321 60.7
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 6.1e-99 365.2 256 69.1
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 8.0e-99 364.8 260 67.3
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.0e-98 364.4 231 75.3
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 1.8e-98 363.6 257 68.9
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 1.8e-98 363.6 266 66.9
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 1.2e-97 360.9 319 60.5
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 1.7e-96 357.1 281 60.9
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 4.8e-96 355.5 254 66.9
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 4.8e-96 355.5 297 59.9
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 6.3e-96 355.1 271 64.9
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 1.8e-95 353.6 243 70.8
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 2.4e-95 353.2 253 67.2
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 2.4e-95 353.2 362 53.6
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 9.1e-95 351.3 281 62.6
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 2.0e-94 350.1 350 54.6
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 3.5e-94 349.4 235 70.2
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 5.9e-94 348.6 281 61.9
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 5.9e-94 348.6 262 63.4
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 7.7e-94 348.2 260 64.6
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 7.7e-94 348.2 253 64.8
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 7.7e-94 348.2 260 64.6
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 1.3e-93 347.4 253 66.0
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 1.3e-93 347.4 260 64.2
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 1.3e-93 347.4 210 78.1
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 1.7e-93 347.1 260 64.2
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 2.9e-93 346.3 281 61.6
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 3.8e-93 345.9 243 70.4
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 3.2e-92 342.8 260 63.8
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 4.2e-92 342.4 236 68.6
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 1.2e-91 340.9 337 54.6
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 1.3e-88 330.9 248 64.5
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 1.3e-88 330.9 214 72.9
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 2.0e-86 323.6 296 58.1
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.3e-85 320.9 262 60.3
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.7e-85 320.5 262 60.3
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 5.0e-85 318.9 262 60.3
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 8.0e-83 311.6 289 56.7
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 1.0e-82 311.2 248 62.1
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 6.8e-82 308.5 235 61.3
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 8.3e-80 301.6 354 52.5
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 5.9e-78 295.4 182 76.4
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 7.8e-78 295.0 188 71.3
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 9.2e-71 271.6 256 52.0
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 6.2e-67 258.8 206 58.7
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 6.8e-66 255.4 254 51.2
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 9.2e-63 245.0 238 49.6
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 2.1e-54 217.2 214 50.9
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 2.4e-47 193.7 119 74.8
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.6e-46 191.0 245 44.9
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.5e-44 184.5 151 60.3
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 1.9e-44 184.1 123 69.9
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 1.2e-38 164.9 162 53.1
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 8.4e-24 115.5 83 62.7
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 7.4e-20 102.4 68 67.6
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 3.7e-19 100.1 68 70.6
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 5.3e-18 96.3 153 39.9
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.5e-17 94.7 61 70.5
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.5e-17 94.7 61 70.5
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 1.2e-14 85.1 161 33.5
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.6e-14 84.7 142 34.5
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 2.7e-14 84.0 236 30.5
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 3.5e-14 83.6 78 55.1
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 4.6e-14 83.2 214 30.8
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 6.1e-14 82.8 245 30.2
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 2.3e-13 80.9 217 29.0
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 3.9e-13 80.1 166 30.1
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 6.7e-13 79.3 224 31.2
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 6.7e-13 79.3 141 33.3
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 6.7e-13 79.3 220 28.6
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 1.5e-12 78.2 224 30.4
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 1.9e-12 77.8 215 28.8
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.5e-12 77.4 217 29.5
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 3.3e-12 77.0 222 30.2
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 4.3e-12 76.6 124 31.5
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 5.7e-12 76.3 217 30.0
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 5.7e-12 76.3 224 29.9
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 5.7e-12 76.3 135 31.9
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 5.7e-12 76.3 166 30.7
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 7.4e-12 75.9 116 35.3
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 9.7e-12 75.5 163 29.4
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 9.7e-12 75.5 145 31.7
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.3e-11 75.1 225 29.8
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 1.3e-11 75.1 157 30.6
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 1.3e-11 75.1 141 31.2
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.6e-11 74.7 214 29.0
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 2.8e-11 73.9 195 27.7
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 6.3e-11 72.8 213 29.6
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 6.3e-11 72.8 213 29.6
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 6.3e-11 72.8 214 29.9
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 8.2e-11 72.4 209 28.7
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.1e-10 72.0 66 50.0
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 1.1e-10 72.0 210 28.6
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 1.1e-10 72.0 142 32.4
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 1.8e-10 71.2 213 28.2
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 3.1e-10 70.5 116 33.6
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 4.1e-10 70.1 211 28.4
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 4.1e-10 70.1 143 31.5
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 5.3e-10 69.7 212 26.4
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 1.2e-09 68.6 115 33.0
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 1.2e-09 68.6 148 34.5
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 1.5e-09 68.2 169 29.0
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 4.5e-09 66.6 255 25.1
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 2.2e-08 64.3 194 26.8
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 6.5e-08 62.8 97 34.0
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 1.1e-07 62.0 215 26.0
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 1.4e-07 61.6 125 32.8
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 3.2e-07 60.5 263 25.5
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 3.2e-07 60.5 97 34.0
Phvul.L001633 Phaseolus vulgaris HOM05D008272 ORTHO05D010429 7.2e-07 59.3 78 41.0
EL10Ac1g01762 Beta vulgaris HOM05D003844 ORTHO05D004534 1.2e-06 58.5 141 31.9
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 2.7e-06 57.4 172 29.1
AUR62033852 Chenopodium quinoa HOM05D003844 ORTHO05D004534 6.1e-06 56.2 126 32.5


User provided reference genes

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