Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 5.3e-102 374.4 193 100.0
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 2.8e-71 272.3 193 77.7
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 1.5e-69 266.5 195 74.9
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 1.0e-68 263.8 192 75.0
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 1.3e-68 263.5 196 73.0
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 3.8e-68 261.9 178 79.2
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 1.4e-67 260.0 195 72.8
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 1.9e-67 259.6 196 74.0
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 2.5e-67 259.2 196 71.4
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 2.5e-67 259.2 196 73.5
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 5.5e-67 258.1 195 72.3
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 4.7e-66 255.0 193 74.1
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 6.1e-66 254.6 195 71.8
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 2.3e-65 252.7 196 72.4
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 3.0e-65 252.3 193 73.1
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 3.0e-65 252.3 196 71.9
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 3.0e-65 252.3 196 71.9
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 3.9e-65 251.9 196 69.4
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 1.1e-64 250.4 196 69.9
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 1.1e-64 250.4 193 72.5
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 1.5e-64 250.0 194 72.2
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 2.0e-64 249.6 197 72.6
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 3.3e-64 248.8 186 73.1
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 3.3e-64 248.8 186 73.7
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 5.7e-64 248.1 196 69.9
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 7.4e-64 247.7 171 78.4
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 9.7e-64 247.3 197 72.1
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 9.7e-64 247.3 201 68.7
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 1.3e-63 246.9 194 71.6
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 1.3e-63 246.9 196 69.9
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.7e-63 246.5 193 72.5
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.7e-63 246.5 195 69.2
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 2.8e-63 245.7 195 71.3
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 8.2e-63 244.2 194 72.2
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 8.2e-63 244.2 196 70.4
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 1.4e-62 243.4 196 70.9
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 1.4e-62 243.4 197 71.6
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.4e-62 243.4 192 67.2
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 1.4e-62 243.4 185 69.7
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 1.8e-62 243.0 196 70.9
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 3.1e-62 242.3 196 69.9
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 4.1e-62 241.9 172 75.6
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 5.3e-62 241.5 173 76.3
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 7.0e-62 241.1 199 68.3
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 9.1e-62 240.7 170 74.7
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 2.6e-61 239.2 196 69.4
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 2.6e-61 239.2 165 76.4
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 5.9e-61 238.0 186 70.4
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 5.9e-61 238.0 170 74.1
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 7.7e-61 237.7 140 86.4
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 1.0e-60 237.3 195 69.2
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.0e-60 237.3 195 69.7
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.3e-60 236.9 186 70.4
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.3e-60 236.9 196 67.3
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.3e-60 236.9 196 67.3
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 1.3e-60 236.9 196 67.3
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 1.7e-60 236.5 192 67.2
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 1.7e-60 236.5 193 68.9
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 1.7e-60 236.5 195 69.2
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.7e-60 236.5 171 73.7
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 2.9e-60 235.7 173 73.4
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 5.0e-60 235.0 197 69.0
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 5.0e-60 235.0 196 68.4
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 6.5e-60 234.6 195 69.2
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 1.1e-59 233.8 140 84.3
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 1.5e-59 233.4 195 68.2
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 1.5e-59 233.4 190 69.5
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 1.9e-59 233.0 194 68.6
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 2.5e-59 232.6 182 68.7
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 2.5e-59 232.6 182 68.7
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 2.5e-59 232.6 173 71.7
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 2.5e-59 232.6 199 67.3
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 3.2e-59 232.3 182 68.7
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 4.2e-59 231.9 197 67.0
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 4.2e-59 231.9 190 68.4
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 5.5e-59 231.5 182 68.7
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 7.2e-59 231.1 199 66.3
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 7.2e-59 231.1 190 68.9
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 9.4e-59 230.7 184 70.1
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 9.4e-59 230.7 176 72.2
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 1.2e-58 230.3 169 74.6
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 1.6e-58 229.9 181 68.0
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 1.6e-58 229.9 195 68.7
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 2.7e-58 229.2 190 67.4
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 4.7e-58 228.4 179 69.8
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 6.1e-58 228.0 195 65.1
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.0e-57 227.3 180 71.1
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.4e-57 226.9 195 68.2
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.8e-57 226.5 189 68.3
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 2.3e-57 226.1 201 67.2
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 2.3e-57 226.1 200 64.0
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 3.9e-57 225.3 187 67.9
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 3.9e-57 225.3 188 67.6
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 3.9e-57 225.3 184 67.9
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 5.2e-57 224.9 204 65.2
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 6.7e-57 224.6 181 69.6
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 6.7e-57 224.6 188 69.1
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 8.8e-57 224.2 158 74.7
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 1.1e-56 223.8 188 67.0
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 1.1e-56 223.8 136 84.6
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 1.1e-56 223.8 192 66.1
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.5e-56 223.4 192 68.2
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 2.0e-56 223.0 172 68.6
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.6e-56 222.6 188 67.0
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 2.6e-56 222.6 141 81.6
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 3.3e-56 222.2 192 68.8
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 5.7e-56 221.5 184 68.5
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 9.7e-56 220.7 187 67.9
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 1.7e-55 219.9 196 64.3
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 2.2e-55 219.5 194 64.9
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 3.7e-55 218.8 192 64.1
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.8e-54 216.5 150 77.3
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 2.4e-54 216.1 191 63.4
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 4.1e-54 215.3 189 64.0
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 7.0e-54 214.5 187 66.3
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 1.2e-53 213.8 180 68.3
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 5.9e-53 211.5 197 63.5
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 7.7e-53 211.1 195 63.1
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 1.0e-52 210.7 175 68.6
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 3.8e-52 208.8 197 64.5
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 1.9e-51 206.5 174 64.4
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 1.9e-51 206.5 164 69.5
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 3.6e-50 202.2 193 63.2
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.6e-50 202.2 195 62.1
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 8.0e-50 201.1 114 88.6
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 8.0e-50 201.1 114 88.6
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 8.0e-50 201.1 195 61.5
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 1.0e-49 200.7 137 76.6
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 1.8e-49 199.9 112 90.2
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 2.3e-49 199.5 115 87.8
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 2.3e-49 199.5 184 64.1
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 3.0e-49 199.1 113 90.3
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 5.2e-49 198.4 112 90.2
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 5.2e-49 198.4 199 57.8
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 4.4e-48 195.3 112 89.3
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 1.7e-47 193.4 180 63.9
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 6.3e-47 191.4 140 73.6
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 1.0e-44 184.1 140 67.1
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 1.3e-44 183.7 111 86.5
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 2.9e-44 182.6 215 54.9
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 8.5e-44 181.0 146 66.4
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 8.5e-44 181.0 141 68.8
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.5e-43 179.5 188 58.5
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 5.5e-43 178.3 196 57.1
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 9.4e-43 177.6 141 67.4
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 3.6e-42 175.6 109 79.8
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 4.7e-42 175.3 143 63.6
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 1.0e-41 174.1 167 62.3
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 5.2e-41 171.8 175 56.0
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 9.8e-40 167.5 136 67.6
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 4.9e-39 165.2 345 37.1
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.4e-38 162.9 130 69.2
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 5.4e-38 161.8 113 72.6
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 7.0e-38 161.4 111 72.1
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 2.5e-35 152.9 114 69.3
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 8.3e-31 137.9 111 63.1
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.4e-30 137.1 127 63.0
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 4.3e-27 125.6 73 84.9
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 3.4e-24 115.9 95 66.3
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 4.4e-24 115.5 140 48.6
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 3.7e-23 112.5 91 67.0
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 3.2e-22 109.4 144 47.9
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 7.0e-22 108.2 87 70.1
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 4.6e-21 105.5 87 69.0
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 4.6e-21 105.5 87 69.0
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 8.6e-20 101.3 113 54.0
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 2.4e-14 83.2 47 85.1
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 5.4e-14 82.0 49 81.6
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 3.5e-13 79.3 44 90.9
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 1.8e-09 67.0 38 86.8


User provided reference genes

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