Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 2.7e-62 241.9 128 100.0
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 9.7e-28 127.1 183 44.8
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.5e-25 119.8 191 42.9
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 2.9e-24 115.5 180 43.9
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 3.8e-24 115.2 206 39.8
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 2.1e-22 109.4 182 42.3
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 4.7e-22 108.2 181 42.0
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 4.7e-22 108.2 187 40.1
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 6.1e-22 107.8 180 42.8
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 1.8e-21 106.3 174 42.5
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 2.3e-21 105.9 183 39.9
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 2.3e-21 105.9 183 39.9
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 4.0e-21 105.1 193 41.5
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 6.7e-21 104.4 190 38.4
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 6.7e-21 104.4 178 40.4
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 8.8e-21 104.0 182 40.1
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 1.1e-20 103.6 179 42.5
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 1.5e-20 103.2 185 38.9
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 1.5e-20 103.2 181 41.4
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 2.0e-20 102.8 171 43.3
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 4.4e-20 101.7 182 37.9
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 5.7e-20 101.3 180 39.4
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 7.4e-20 100.9 185 40.0
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 1.3e-19 100.1 187 40.1
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 3.7e-19 98.6 184 39.7
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 8.2e-19 97.4 104 53.8
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 8.2e-19 97.4 174 41.4
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 1.1e-18 97.1 178 38.8
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 1.1e-18 97.1 175 40.0
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 1.4e-18 96.7 85 58.8
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 1.4e-18 96.7 190 36.3
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 3.1e-18 95.5 189 37.6
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 3.1e-18 95.5 190 36.3
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 3.1e-18 95.5 85 61.2
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 7.0e-18 94.4 188 37.8
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 1.2e-17 93.6 180 35.0
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 1.2e-17 93.6 86 61.6
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 1.6e-17 93.2 106 50.9
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 2.0e-17 92.8 175 40.0
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 5.9e-17 91.3 177 39.5
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 1.0e-16 90.5 83 55.4
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 1.7e-16 89.7 86 54.7
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.7e-16 89.7 180 35.0
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 2.9e-16 89.0 185 34.6
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.9e-16 89.0 184 37.5
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 2.9e-16 89.0 177 37.3
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 3.8e-16 88.6 86 53.5
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 3.8e-16 88.6 182 36.3
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 5.0e-16 88.2 184 38.6
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 5.0e-16 88.2 85 57.6
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 6.5e-16 87.8 178 37.6
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 8.5e-16 87.4 191 35.6
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.1e-15 87.0 84 56.0
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 1.1e-15 87.0 99 52.5
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 1.5e-15 86.7 180 33.9
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.9e-15 86.3 86 51.2
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 1.9e-15 86.3 71 62.0
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 2.5e-15 85.9 183 37.7
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 3.2e-15 85.5 193 33.7
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 9.4e-15 84.0 182 35.7
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 9.4e-15 84.0 177 37.9
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 1.2e-14 83.6 162 37.0
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 1.2e-14 83.6 185 35.7
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 1.6e-14 83.2 111 45.9
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 2.1e-14 82.8 162 37.0
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 2.1e-14 82.8 79 54.4
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 8.0e-14 80.9 78 55.1
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 1.0e-13 80.5 94 56.4
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 1.0e-13 80.5 90 52.2
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 2.3e-13 79.3 78 53.8
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 2.3e-13 79.3 119 42.9
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 2.3e-13 79.3 155 40.0
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 2.3e-13 79.3 81 55.6
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 3.0e-13 79.0 91 57.1
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 3.0e-13 79.0 105 44.8
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 4.0e-13 78.6 180 36.1
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 4.0e-13 78.6 155 40.0
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 4.0e-13 78.6 67 62.7
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 8.8e-13 77.4 119 42.9
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 8.8e-13 77.4 78 52.6
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 8.8e-13 77.4 82 53.7
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 1.2e-12 77.0 119 42.9
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 2.0e-12 76.3 119 42.0
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.0e-12 76.3 156 39.7
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 2.0e-12 76.3 185 33.5
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 2.0e-12 76.3 62 59.7
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 2.6e-12 75.9 78 51.3
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 2.6e-12 75.9 79 53.2
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 3.4e-12 75.5 119 42.9
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 3.4e-12 75.5 186 32.3
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 5.7e-12 74.7 119 42.9
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 1.3e-11 73.6 160 33.8
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 1.3e-11 73.6 119 41.2
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 1.3e-11 73.6 175 33.1
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 1.3e-11 73.6 119 41.2
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 2.8e-11 72.4 65 58.5
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 3.7e-11 72.0 119 39.5
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 3.7e-11 72.0 119 39.5
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 3.7e-11 72.0 119 39.5
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 3.7e-11 72.0 119 39.5
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 4.8e-11 71.6 93 47.3
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 6.3e-11 71.2 93 47.3
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 6.3e-11 71.2 93 47.3
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 1.1e-10 70.5 164 33.5
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 1.4e-10 70.1 150 34.0
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 1.4e-10 70.1 156 32.1
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 1.8e-10 69.7 93 46.2
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 1.8e-10 69.7 66 57.6
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 2.4e-10 69.3 150 32.0
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 4.1e-10 68.6 93 46.2
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 4.1e-10 68.6 93 46.2
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 4.1e-10 68.6 152 34.2
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 5.4e-10 68.2 148 33.1
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 5.4e-10 68.2 155 34.8
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 5.4e-10 68.2 72 50.0
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 9.1e-10 67.4 155 35.5
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 1.2e-09 67.0 95 45.3
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 2.0e-09 66.2 155 36.1
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 2.0e-09 66.2 82 45.1
unitig_37.g12687 Utricularia gibba HOM05D004507 ORTHO05D004874 3.5e-09 65.5 76 47.4
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 7.7e-09 64.3 149 32.2
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 7.7e-09 64.3 146 35.6
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 7.7e-09 64.3 189 31.2
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 1.3e-08 63.5 151 33.1
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 1.3e-08 63.5 151 33.1
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 2.9e-08 62.4 151 32.5
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 2.9e-08 62.4 151 32.5
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 2.9e-08 62.4 63 50.8
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 3.8e-08 62.0 151 32.5
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 5.0e-08 61.6 146 33.6
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 1.1e-07 60.5 77 46.8
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 1.9e-07 59.7 64 46.9
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 2.5e-07 59.3 65 50.8
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 2.5e-07 59.3 56 58.9
CDE02G3054 Ceratophyllum demersum HOM05D001966 ORTHO05D011119 8.0e-06 54.3 84 35.7


User provided reference genes

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