Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 0.0e+00 1097.8 547 100.0
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 5.5e-229 797.7 507 74.8
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 5.7e-226 787.7 545 69.5
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 2.8e-225 785.4 518 71.8
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 9.0e-224 780.4 548 69.9
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.5e-223 779.6 532 70.1
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 2.0e-223 779.2 544 68.9
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 3.4e-223 778.5 542 68.8
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 3.4e-223 778.5 542 69.0
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 8.4e-222 773.9 548 69.7
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 8.4e-222 773.9 528 69.1
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 1.1e-221 773.5 547 69.3
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 1.9e-221 772.7 538 69.3
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 4.2e-221 771.5 501 72.9
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 7.2e-221 770.8 549 67.8
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.6e-220 769.6 546 68.5
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 3.5e-220 768.5 556 67.4
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 1.0e-219 766.9 535 70.8
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 1.5e-218 763.1 560 67.3
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 4.3e-218 761.5 548 67.2
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 1.6e-217 759.6 541 67.5
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 2.8e-217 758.8 525 67.6
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 4.8e-217 758.1 546 68.9
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 6.3e-217 757.7 530 69.6
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 8.2e-217 757.3 528 69.5
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 6.9e-216 754.2 545 65.0
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 1.2e-215 753.4 497 72.4
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 1.2e-215 753.4 545 67.7
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 2.0e-215 752.7 503 70.4
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 2.6e-215 752.3 541 67.7
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 4.5e-215 751.5 560 67.5
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 7.7e-215 750.7 497 72.2
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 5.0e-214 748.0 516 69.8
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 8.5e-214 747.3 498 71.3
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 9.4e-213 743.8 538 66.5
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 2.1e-212 742.7 499 70.9
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 4.6e-212 741.5 503 69.4
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 1.0e-211 740.3 505 70.3
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 3.0e-211 738.8 539 66.2
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 3.9e-211 738.4 503 68.2
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 8.8e-211 737.3 495 70.3
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 5.7e-210 734.6 500 69.6
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 1.3e-209 733.4 524 68.1
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 1.7e-209 733.0 514 69.1
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 2.2e-209 732.6 546 66.8
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 4.8e-209 731.5 539 64.6
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 4.8e-209 731.5 518 67.0
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 8.2e-209 730.7 500 69.2
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 1.1e-208 730.3 541 66.2
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 4.1e-208 728.4 515 67.2
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 2.6e-207 725.7 539 65.3
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 7.7e-207 724.2 530 65.5
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 5.0e-206 721.5 500 68.2
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 1.1e-205 720.3 541 65.1
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 1.1e-205 720.3 532 64.8
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 1.9e-205 719.5 497 68.0
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 1.9e-205 719.5 497 68.0
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 2.5e-205 719.2 497 68.0
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 3.2e-205 718.8 498 68.3
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 5.5e-205 718.0 529 65.4
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 7.2e-205 717.6 520 67.9
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 9.4e-205 717.2 500 67.8
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 2.1e-204 716.1 497 67.8
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 3.6e-204 715.3 487 68.6
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 1.4e-203 713.4 504 68.8
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 1.4e-203 713.4 547 64.7
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 5.1e-203 711.4 503 68.8
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.1e-202 710.3 503 67.4
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 3.3e-202 708.8 502 67.9
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 3.3e-202 708.8 497 68.2
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 8.2e-201 704.1 502 66.7
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 1.1e-200 703.7 493 67.5
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 1.6e-199 699.9 547 64.7
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 2.0e-199 699.5 513 66.9
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 5.9e-199 698.0 538 65.4
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 1.3e-198 696.8 513 66.5
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 3.8e-198 695.3 507 67.3
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 5.0e-198 694.9 501 65.5
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 8.5e-198 694.1 504 66.5
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 3.7e-193 678.7 528 65.0
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 5.9e-191 671.4 425 76.2
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 7.7e-191 671.0 478 67.8
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 2.9e-190 669.1 481 67.6
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 3.8e-190 668.7 466 69.7
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 2.1e-188 662.9 458 68.6
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 4.7e-188 661.8 508 65.4
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 5.2e-187 658.3 529 62.2
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 1.7e-182 643.3 513 61.4
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 7.2e-181 637.9 512 60.9
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 2.6e-178 629.4 585 55.7
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 3.7e-177 625.5 427 69.3
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 2.5e-173 612.8 415 70.8
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 1.6e-167 593.6 490 59.6
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 7.8e-167 591.3 530 54.0
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 6.6e-166 588.2 425 67.3
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 1.4e-163 580.5 394 70.1
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 7.5e-162 574.7 563 52.4
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 7.5e-162 574.7 563 52.4
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 2.7e-159 566.2 381 73.0
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 7.3e-157 558.1 381 71.1
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 3.7e-153 545.8 473 53.7
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 5.1e-150 535.4 441 59.4
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 1.7e-145 520.4 350 70.9
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 1.3e-142 510.8 382 66.5
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 8.9e-139 498.0 371 65.8
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 1.6e-135 487.3 513 51.3
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.5e-133 479.9 481 55.5
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 3.2e-128 463.0 505 50.1
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 5.1e-126 455.7 501 50.7
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 6.2e-124 448.7 433 55.4
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 2.5e-109 400.2 285 67.7
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 1.4e-91 341.3 458 41.7
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 4.5e-82 309.7 209 69.9
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 4.7e-71 273.1 235 56.2
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 6.3e-60 236.1 189 60.8
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 2.1e-55 221.1 200 54.0
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 2.9e-52 210.7 160 63.8
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 1.2e-50 205.3 139 67.6
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 5.0e-49 199.9 133 68.4
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 6.2e-47 193.0 113 74.3
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 8.9e-46 189.1 127 63.8
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 4.1e-43 180.3 107 72.9
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 1.3e-41 175.3 501 29.1
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 1.5e-32 145.2 89 70.8
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 2.4e-27 127.9 133 54.1
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 4.6e-26 123.6 88 63.6
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 6.0e-26 123.2 107 57.0
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 6.0e-26 123.2 107 57.0
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 6.0e-26 123.2 107 57.0
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 1.9e-24 118.2 75 72.0
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 6.4e-20 103.2 77 58.4
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 7.9e-10 69.7 203 29.1
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 1.9e-08 65.1 313 24.9
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 2.5e-08 64.7 315 25.4
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 2.5e-08 64.7 315 25.4
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 4.3e-08 63.9 315 25.4
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 7.4e-08 63.2 228 27.6
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 7.4e-08 63.2 224 24.6
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.3e-07 62.4 221 26.2
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.6e-07 62.0 89 42.7
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 2.1e-07 61.6 221 25.8
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 2.8e-07 61.2 220 25.5
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 3.7e-07 60.8 224 25.4
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 3.7e-07 60.8 221 25.3
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 3.7e-07 60.8 221 25.3
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 3.7e-07 60.8 221 25.3
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 3.7e-07 60.8 274 25.2
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 3.7e-07 60.8 39 59.0
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 4.8e-07 60.5 272 27.2
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 6.2e-07 60.1 284 23.9
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 8.1e-07 59.7 111 31.5
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 8.1e-07 59.7 322 23.0
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 8.1e-07 59.7 272 22.8
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 8.1e-07 59.7 296 24.3
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 1.1e-06 59.3 306 22.9
FvH4_7g09360 Fragaria vesca HOM05D006213 ORTHO05D008107 1.1e-06 59.3 221 27.1
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 1.4e-06 58.9 226 25.7
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 1.4e-06 58.9 223 25.1
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 1.8e-06 58.5 277 26.7
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 2.4e-06 58.2 278 24.8
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 2.4e-06 58.2 275 23.3
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 3.1e-06 57.8 117 29.9
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 3.1e-06 57.8 229 25.3
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 3.1e-06 57.8 225 25.8
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 3.1e-06 57.8 114 31.6
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 3.1e-06 57.8 114 31.6
Mapoly0044s0100 Marchantia polymorpha HOM05D006213 ORTHO05D008107 3.1e-06 57.8 220 24.5
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 3.1e-06 57.8 220 25.0
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 4.0e-06 57.4 242 24.4
Aqoxy3G02673 Aquilegia oxysepala HOM05D006213 ORTHO05D008107 5.3e-06 57.0 112 29.5
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 6.9e-06 56.6 258 24.4
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 6.9e-06 56.6 230 25.7
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 9.0e-06 56.2 272 25.0
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 9.0e-06 56.2 226 27.0


User provided reference genes

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