Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g13850 Coffea canephora HOM05D012567 ORTHO05D004696 7.5e-170 600.5 321 100.0
CSS0022952 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 7.3e-32 142.1 309 32.7
CSS0038346 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 3.6e-31 139.8 303 31.7
HanXRQChr03g0074171 Helianthus annuus HOM05D012567 ORTHO05D004696 8.1e-31 138.7 304 31.6
HanXRQChr03g0074111 Helianthus annuus HOM05D012567 ORTHO05D004696 8.9e-30 135.2 300 31.0
HanXRQChr03g0074151 Helianthus annuus HOM05D012567 ORTHO05D004696 8.9e-30 135.2 300 31.0
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 4.4e-29 132.9 298 30.5
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 4.4e-29 132.9 322 32.0
Lsat_1_v5_gn_7_52621 Lactuca sativa HOM05D012567 ORTHO05D004696 1.3e-28 131.3 305 30.5
Lsat_1_v5_gn_7_52601 Lactuca sativa HOM05D012567 ORTHO05D004696 1.7e-28 131.0 306 32.4
HanXRQChr06g0167601 Helianthus annuus HOM05D012567 ORTHO05D004696 8.4e-28 128.6 307 33.9
Lsat_1_v5_gn_7_52640 Lactuca sativa HOM05D012567 ORTHO05D004696 2.1e-26 124.0 300 32.7
Lsat_1_v5_gn_7_52661 Lactuca sativa HOM05D012567 ORTHO05D004696 2.3e-25 120.6 306 31.4
HanXRQChr09g0244301 Helianthus annuus HOM05D012567 ORTHO05D004696 1.6e-23 114.4 305 29.5
TAR626G1223 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.8e-23 113.6 321 28.7
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.4e-22 111.3 287 31.0
ECA240G1251 Erigeron canadensis HOM05D012567 ORTHO05D004696 1.8e-22 110.9 240 34.2
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.8e-22 110.9 282 29.1
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.4e-22 110.5 287 31.0
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.4e-22 110.5 287 30.7
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 5.3e-22 109.4 287 29.6
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 5.8e-21 105.9 281 29.5
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 1.1e-19 101.7 285 26.3
Dinv41298 Davidia involucrata HOM05D004960 ORTHO05D004696 7.1e-19 99.0 107 53.3
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 2.3e-17 94.0 285 26.3
HanXRQChr03g0074181 Helianthus annuus HOM05D012567 ORTHO05D004696 5.1e-17 92.8 216 30.1
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 1.5e-16 91.3 293 27.6
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 3.3e-16 90.1 283 26.9
Potri.010G250300 Populus trichocarpa HOM05D004960 ORTHO05D004696 9.6e-16 88.6 290 25.9
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 1.3e-15 88.2 289 24.6
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 5.3e-14 82.8 285 25.6
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 5.3e-14 82.8 291 24.4
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 9.0e-14 82.0 287 26.5
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 9.0e-14 82.0 287 27.5
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 1.2e-13 81.6 305 25.9
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 3.4e-13 80.1 282 24.5
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 1.3e-12 78.2 312 26.6
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 1.3e-12 78.2 283 25.4
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 1.7e-12 77.8 294 26.9
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 1.7e-12 77.8 304 24.0
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 2.9e-12 77.0 296 26.0
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 2.9e-12 77.0 236 28.0
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 4.9e-12 76.3 310 27.7
MBI14_g30697_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 6.4e-12 75.9 300 27.7
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 1.1e-11 75.1 314 25.5
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 1.4e-11 74.7 287 26.1
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 1.9e-11 74.3 294 25.5
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 2.4e-11 73.9 302 22.8
Eucgr.J03153 Eucalyptus grandis HOM05D004960 ORTHO05D004696 3.2e-11 73.6 306 25.5
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 4.2e-11 73.2 302 22.8
Actinidia38795 Actinidia chinensis HOM05D004960 ORTHO05D004696 9.3e-11 72.0 281 24.6
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 9.3e-11 72.0 287 25.8
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 1.6e-10 71.2 308 25.3
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 7.9e-10 68.9 298 25.5
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.8e-09 67.8 232 25.9
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 2.3e-09 67.4 299 24.4
Duzib168G0188 Durio zibethinus HOM05D004960 ORTHO05D004696 2.3e-09 67.4 299 23.7
Manes.13G066000 Manihot esculenta HOM05D004960 ORTHO05D004696 2.3e-09 67.4 293 22.2
TAR626G1398 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.3e-09 67.4 235 28.5
Eucgr.F04013 Eucalyptus grandis HOM05D004960 ORTHO05D004696 3.0e-09 67.0 295 27.1
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 5.1e-09 66.2 297 22.9
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 1.1e-08 65.1 291 25.4
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 1.1e-08 65.1 230 27.0
TAR626G1419 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.1e-08 65.1 313 27.5
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 1.5e-08 64.7 281 22.8
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.9e-08 64.3 287 23.7
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 1.9e-08 64.3 285 24.9
A09p35100 Brassica napus HOM05D001062 ORTHO05D000884 2.5e-08 63.9 298 25.5
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 2.5e-08 63.9 209 25.8
Aqoxy7G03202 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 3.3e-08 63.5 298 21.8
MBI14_g30699_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 3.3e-08 63.5 282 23.4
BcaB07g32772 Brassica carinata HOM05D001062 ORTHO05D000884 4.3e-08 63.2 298 25.2
Sp1g26960 Schrenkiella parvula HOM05D001062 ORTHO05D000884 4.3e-08 63.2 298 24.8
BraA09t39042Z Brassica rapa HOM05D001062 ORTHO05D000884 5.6e-08 62.8 298 25.5
C07p14580 Brassica napus HOM05D001062 ORTHO05D000884 7.4e-08 62.4 298 23.8
BolC7t41957H Brassica oleracea HOM05D001062 ORTHO05D000884 7.4e-08 62.4 298 23.8
BraA07t28744Z Brassica rapa HOM05D001062 ORTHO05D000884 7.4e-08 62.4 298 23.8
PSO063G2425 Papaver somniferum HOM05D004960 ORTHO05D004696 9.6e-08 62.0 324 24.4
A07p09480 Brassica napus HOM05D001062 ORTHO05D000884 1.3e-07 61.6 298 23.8
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.6e-07 61.2 302 26.8
BcaC05g27144 Brassica carinata HOM05D001062 ORTHO05D000884 1.6e-07 61.2 298 25.2
C05p30280 Brassica napus HOM05D001062 ORTHO05D000884 1.6e-07 61.2 298 25.2
BolC5t31769H Brassica oleracea HOM05D001062 ORTHO05D000884 1.6e-07 61.2 298 25.2
PGR084G0002 Punica granatum HOM05D004960 ORTHO05D004696 2.1e-07 60.8 310 24.2
PGR142G0218 Punica granatum HOM05D004960 ORTHO05D004696 2.1e-07 60.8 310 24.2
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 2.8e-07 60.5 296 24.0
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 3.7e-07 60.1 288 24.7
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 3.7e-07 60.1 300 25.0
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 4.8e-07 59.7 293 25.6
Migut.K00271 Erythranthe guttata HOM05D004960 ORTHO05D004696 8.1e-07 58.9 307 22.1
Carub.0003s3296 Capsella rubella HOM05D004960 ORTHO05D004696 1.1e-06 58.5 291 22.7
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.1e-06 58.5 286 23.1
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.1e-06 58.5 286 23.1
TWI12G0641 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.1e-06 58.5 291 24.4
CARHR030610 Cardamine hirsuta HOM05D001062 ORTHO05D000884 3.1e-06 57.0 301 24.9
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 3.1e-06 57.0 288 20.8
Carub.0001s2953 Capsella rubella HOM05D001062 ORTHO05D000884 5.3e-06 56.2 298 23.5
Thhalv10008216m.g Eutrema salsugineum HOM05D001062 ORTHO05D000884 6.9e-06 55.8 298 23.8


User provided reference genes

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