Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g13620 Coffea canephora HOM05D000055 ORTHO05D000057 3.9e-54 214.5 107 100.0
CSS0048753 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D000057 9.6e-21 103.6 70 72.9
Dinv42757 Davidia involucrata HOM05D000055 ORTHO05D000057 2.8e-20 102.1 70 71.4
Dinv43345 Davidia involucrata HOM05D000055 ORTHO05D000057 2.8e-20 102.1 70 71.4
QL02p096903 Quercus lobata HOM05D000055 ORTHO05D000057 1.1e-19 100.1 99 54.5
Actinidia17326 Actinidia chinensis HOM05D000055 ORTHO05D000057 4.0e-19 98.2 70 70.0
CSS0044366 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D000057 5.3e-19 97.8 64 75.0
Duzib170G0691 Durio zibethinus HOM05D000055 ORTHO05D000057 5.3e-19 97.8 88 58.0
TPR.G5296 Trifolium pratense HOM05D000055 ORTHO05D000057 2.6e-18 95.5 70 67.1
vmacro06030 Vaccinium macrocarpon HOM05D000055 ORTHO05D000057 3.4e-18 95.1 79 62.0
GSVIVG01029116001 Vitis vinifera HOM05D000055 ORTHO05D000057 4.5e-18 94.7 68 70.6
Rhsim03G0262800 Rhododendron simsii HOM05D000055 ORTHO05D000057 5.8e-18 94.4 73 67.1
Actinidia04123 Actinidia chinensis HOM05D000055 ORTHO05D000057 9.9e-18 93.6 79 62.0
Duzib168G0784 Durio zibethinus HOM05D000055 ORTHO05D000057 9.9e-18 93.6 73 64.4
TAR383G0908 Trochodendron aralioides HOM05D000055 ORTHO05D000057 2.2e-17 92.4 70 67.1
FvH4_4g08900 Fragaria vesca HOM05D000055 ORTHO05D000057 4.9e-17 91.3 94 51.1
FAN12G2477 Fragaria x ananassa HOM05D000055 ORTHO05D000057 4.9e-17 91.3 94 51.1
CiPaw.08G037800 Carya illinoinensis HOM05D000055 ORTHO05D000057 6.4e-17 90.9 69 62.3
Medtr4g128820 Medicago truncatula HOM05D000055 ORTHO05D000057 8.4e-17 90.5 68 66.2
CiPaw.07G189200 Carya illinoinensis HOM05D000055 ORTHO05D000057 1.1e-16 90.1 76 59.2
Psat0ss9363g0280 Pisum sativum HOM05D000055 ORTHO05D000057 1.1e-16 90.1 69 68.1
Sabra06G0132100 Salix brachista HOM05D000055 ORTHO05D000057 1.4e-16 89.7 66 69.7
Haze_22130 Corylus avellana HOM05D000055 ORTHO05D000057 1.9e-16 89.4 70 64.3
COL.COLO4_19571 Corchorus olitorius HOM05D000055 ORTHO05D000057 4.2e-16 88.2 73 60.3
RcHm_v2.0_Chr4g0403561 Rosa chinensis HOM05D000055 ORTHO05D000057 4.2e-16 88.2 75 58.7
FAN07G1227 Fragaria x ananassa HOM05D000055 ORTHO05D000057 5.5e-16 87.8 94 50.0
FAN22G1011 Fragaria x ananassa HOM05D000055 ORTHO05D000057 5.5e-16 87.8 94 50.0
Cfa013527 Carpinus fangiana HOM05D000055 ORTHO05D000057 7.1e-16 87.4 73 60.3
PGR142G4337 Punica granatum HOM05D000055 ORTHO05D000057 7.1e-16 87.4 67 64.2
CANSAT11G1425 Cannabis sativa HOM05D000055 ORTHO05D000057 1.2e-15 86.7 77 58.4
FAN17G1838 Fragaria x ananassa HOM05D000055 ORTHO05D000057 2.1e-15 85.9 94 48.9
Lj4g0020926 Lotus japonicus HOM05D000055 ORTHO05D000057 2.1e-15 85.9 70 62.9
Potri.006G171400 Populus trichocarpa HOM05D000055 ORTHO05D000057 2.1e-15 85.9 67 65.7
Rhsim01G0008300 Rhododendron simsii HOM05D000055 ORTHO05D000057 2.7e-15 85.5 68 61.8
Atru.chr7.740 Acer truncatum HOM05D000055 ORTHO05D000057 3.5e-15 85.1 78 59.0
TAR625G0377 Trochodendron aralioides HOM05D000055 ORTHO05D000057 4.6e-15 84.7 70 61.4
Glyma.17G066300 Glycine max HOM05D000055 ORTHO05D000057 1.0e-14 83.6 70 61.4
Ca_21199_v3 Cicer arietinum L. HOM05D000055 ORTHO05D000057 2.3e-14 82.4 70 60.0
MD13G1265500 Malus domestica HOM05D000055 ORTHO05D000057 3.0e-14 82.0 94 47.9
Prupe.1G091700 Prunus persica HOM05D000055 ORTHO05D000057 3.0e-14 82.0 60 66.7
Eucgr.C00193 Eucalyptus grandis HOM05D000055 ORTHO05D000057 3.9e-14 81.6 70 60.0
Nn8g40399 Nelumbo nucifera HOM05D000055 ORTHO05D000057 3.9e-14 81.6 62 66.1
arahy.Tifrunner.gnm1.ann1.1TF8QR Arachis hypogaea HOM05D000055 ORTHO05D000057 5.1e-14 81.3 75 53.3
arahy.Tifrunner.gnm1.ann1.KL3D23 Arachis hypogaea HOM05D000055 ORTHO05D000057 5.1e-14 81.3 75 53.3
vmacro13098 Vaccinium macrocarpon HOM05D000055 ORTHO05D000057 6.7e-14 80.9 62 62.9
TWI63G1508 Tripterygium wilfordii HOM05D000055 ORTHO05D000057 8.7e-14 80.5 102 48.0
PGR102G2197 Punica granatum HOM05D000055 ORTHO05D000057 1.1e-13 80.1 67 59.7
Potri.018G096042 Populus trichocarpa HOM05D000055 ORTHO05D000057 1.5e-13 79.7 67 64.2
Sabra18G0082300 Salix brachista HOM05D000055 ORTHO05D000057 1.5e-13 79.7 67 62.7
TWI34G0239 Tripterygium wilfordii HOM05D000055 ORTHO05D000057 1.9e-13 79.3 59 67.8
PSO063G1355 Papaver somniferum HOM05D000055 ORTHO05D000057 3.3e-13 78.6 63 57.1
Phvul.003G148600 Phaseolus vulgaris HOM05D000055 ORTHO05D000057 3.3e-13 78.6 78 53.8
Cpa.g.sc95.74 Carica papaya HOM05D000055 ORTHO05D000057 4.3e-13 78.2 64 64.1
Nn2g12641 Nelumbo nucifera HOM05D000055 ORTHO05D000057 7.4e-13 77.4 77 54.5
MBI14_g39545_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D000057 9.6e-13 77.0 63 65.1
Nitab4.5_0000244g0160 Nicotiana tabacum HOM05D000055 ORTHO05D000057 3.7e-12 75.1 59 54.2
ATR0580G284 Amborella trichopoda HOM05D000055 ORTHO05D000057 4.8e-12 74.7 69 56.5
MBI16_g32013_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D000057 3.1e-11 72.0 76 52.6
Aqoxy7G03140 Aquilegia oxysepala HOM05D000055 ORTHO05D000057 6.9e-11 70.9 63 57.1
Carub.0008s1814 Capsella rubella HOM05D000055 ORTHO05D000057 1.5e-10 69.7 65 56.9
A10p15040 Brassica napus HOM05D000055 ORTHO05D000057 4.5e-10 68.2 71 53.5
C09p49490 Brassica napus HOM05D000055 ORTHO05D000057 4.5e-10 68.2 71 53.5
BcaC01g06477 Brassica carinata HOM05D000055 ORTHO05D000057 1.0e-09 67.0 65 55.4
C03p14860 Brassica napus HOM05D000055 ORTHO05D000057 1.0e-09 67.0 65 55.4
BolC3t13930H Brassica oleracea HOM05D000055 ORTHO05D000057 1.0e-09 67.0 65 55.4
CDE02G2380 Ceratophyllum demersum HOM05D000055 ORTHO05D000057 1.0e-09 67.0 102 42.2
CDE04G0737 Ceratophyllum demersum HOM05D000055 ORTHO05D000057 1.0e-09 67.0 63 52.4
Aa31LG3G13480 Aethionema arabicum HOM05D000055 ORTHO05D000057 1.3e-09 66.6 65 52.3
AL8G33670 Arabidopsis lyrata HOM05D000055 ORTHO05D000057 1.3e-09 66.6 65 55.4
AT5G57630 Arabidopsis thaliana HOM05D000055 ORTHO05D000057 1.3e-09 66.6 65 55.4
EL10Ac8g18263 Beta vulgaris HOM05D000055 ORTHO05D000057 1.3e-09 66.6 65 55.4
BcaC04g19946 Brassica carinata HOM05D000055 ORTHO05D000057 1.3e-09 66.6 65 55.4
BolC9t57804H Brassica oleracea HOM05D000055 ORTHO05D000057 1.3e-09 66.6 65 55.4
BraA10t43585Z Brassica rapa HOM05D000055 ORTHO05D000057 1.3e-09 66.6 65 55.4
Ah.09g229720 Amaranthus hybridus HOM05D000055 ORTHO05D000057 1.7e-09 66.2 64 56.2
BcaB08g36113 Brassica carinata HOM05D000055 ORTHO05D000057 2.2e-09 65.9 65 53.8
A03p12670 Brassica napus HOM05D000055 ORTHO05D000057 2.2e-09 65.9 65 53.8
BraA03t10580Z Brassica rapa HOM05D000055 ORTHO05D000057 2.2e-09 65.9 65 53.8
CARHR271400 Cardamine hirsuta HOM05D000055 ORTHO05D000057 2.2e-09 65.9 64 54.7
Os02g0178000 Oryza sativa ssp. japonica HOM05D000055 ORTHO05D000057 2.2e-09 65.9 60 58.3
Sp6g19330 Schrenkiella parvula HOM05D000055 ORTHO05D000057 2.9e-09 65.5 65 55.4
Thhalv10013669m.g Eutrema salsugineum HOM05D000055 ORTHO05D000057 4.9e-09 64.7 65 53.8
Rhsim06G0136500 Rhododendron simsii HOM05D000055 ORTHO05D000057 4.9e-09 64.7 47 57.4
VMungo1215G2450 Vigna mungo HOM05D000055 ORTHO05D000057 6.5e-09 64.3 69 46.4
Gohir.A08G086600 Gossypium hirsutum HOM05D000055 ORTHO05D000057 1.9e-08 62.8 47 63.8
THA.LOC104811810 Tarenaya hassleriana HOM05D000055 ORTHO05D000057 2.7e-07 58.9 52 53.8
Manes.06G027400 Manihot esculenta HOM05D000055 ORTHO05D000057 4.6e-07 58.2 52 51.9
Sc18g0003390 Simmondsia chinensis HOM05D000055 ORTHO05D000057 1.0e-06 57.0 37 73.0


User provided reference genes

Program Settings