Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 0.0e+00 1211.4 638 100.0
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 1.1e-281 973.0 645 78.4
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 2.5e-281 971.8 645 78.3
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 2.5e-281 971.8 645 78.3
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 3.0e-279 964.9 647 79.0
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 5.3e-276 954.1 642 78.3
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 2.6e-275 951.8 647 77.1
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.7e-274 949.1 647 78.1
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.1e-268 929.9 634 78.1
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 4.1e-268 927.9 634 77.9
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 1.6e-267 926.0 642 76.6
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 1.1e-265 919.8 643 75.9
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 3.0e-263 911.8 641 74.4
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 2.6e-262 908.7 635 77.3
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 5.7e-262 907.5 646 75.1
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 8.5e-258 893.6 647 73.4
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 1.9e-257 892.5 644 73.3
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 2.5e-257 892.1 645 73.8
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 2.5e-257 892.1 643 72.3
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 3.2e-257 891.7 646 73.7
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 1.2e-256 889.8 647 73.3
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 2.1e-256 889.0 639 74.0
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 6.8e-255 884.0 640 71.9
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.2e-254 883.2 633 74.7
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 1.2e-254 883.2 634 73.7
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 5.7e-254 880.9 641 74.1
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 9.8e-254 880.2 647 72.6
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 3.7e-253 878.2 644 72.0
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 3.7e-253 878.2 646 72.1
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 8.3e-253 877.1 653 72.4
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 8.3e-253 877.1 655 72.4
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 1.1e-252 876.7 649 70.9
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.4e-252 876.3 646 71.7
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 1.4e-252 876.3 649 72.7
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 4.1e-252 874.8 647 71.4
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 1.2e-251 873.2 656 70.7
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 7.7e-251 870.5 646 73.2
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 2.3e-250 869.0 656 70.3
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 6.5e-250 867.5 648 72.4
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 8.6e-250 867.1 640 71.7
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 1.5e-249 866.3 648 72.2
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 5.5e-249 864.4 646 72.6
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 7.2e-249 864.0 647 71.1
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 7.2e-249 864.0 647 72.2
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 9.5e-249 863.6 640 72.2
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 1.6e-248 862.8 640 72.0
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 1.6e-248 862.8 628 73.9
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 2.1e-248 862.4 643 71.7
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 2.1e-248 862.4 643 72.9
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 3.6e-248 861.7 640 71.2
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 1.4e-247 859.8 640 72.3
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 2.3e-247 859.0 592 76.5
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 2.3e-247 859.0 645 71.5
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 3.0e-247 858.6 633 73.3
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.7e-245 852.8 644 71.6
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.7e-245 852.8 644 71.6
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 4.9e-245 851.3 649 71.6
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 6.3e-245 850.9 646 70.1
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 6.3e-245 850.9 640 70.9
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 3.1e-244 848.6 649 70.1
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 4.1e-244 848.2 646 70.9
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 2.7e-243 845.5 646 69.7
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 5.9e-243 844.3 647 71.7
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 2.9e-242 842.0 649 69.6
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 3.8e-242 841.6 625 71.7
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 6.6e-242 840.9 650 69.4
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 1.1e-241 840.1 646 69.5
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 1.9e-241 839.3 644 71.1
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 1.2e-240 836.6 646 70.4
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 4.7e-240 834.7 629 71.7
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 8.0e-240 833.9 648 69.8
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 1.0e-239 833.6 644 69.6
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.4e-239 833.2 651 68.2
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 5.2e-239 831.2 651 68.8
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 6.8e-239 830.9 628 70.2
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 2.6e-238 828.9 653 68.1
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 2.2e-237 825.9 634 70.5
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 2.9e-237 825.5 655 68.5
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 3.7e-237 825.1 656 67.7
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 6.4e-237 824.3 657 67.4
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 7.0e-236 820.8 653 67.4
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 7.0e-236 820.8 655 67.5
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 9.2e-236 820.5 653 67.8
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 1.2e-235 820.1 652 67.3
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 2.7e-235 818.9 661 66.9
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 5.9e-235 817.8 664 67.2
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 1.0e-234 817.0 654 68.2
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 6.6e-234 814.3 657 67.1
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 6.6e-234 814.3 653 67.4
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 5.6e-233 811.2 657 67.3
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 7.3e-233 810.8 622 71.1
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 9.5e-233 810.4 659 67.1
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 1.1e-231 807.0 660 67.0
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 1.8e-231 806.2 654 65.7
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 1.8e-231 806.2 643 69.1
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 3.1e-231 805.4 648 66.8
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 7.5e-230 800.8 644 66.3
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 2.4e-228 795.8 646 66.9
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 7.8e-227 790.8 644 65.8
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 3.9e-226 788.5 644 65.7
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 3.9e-226 788.5 580 73.3
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 4.3e-225 785.0 657 66.1
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 1.2e-222 776.9 648 65.7
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.7e-219 765.8 641 65.8
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.7e-218 763.1 644 64.9
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 2.8e-216 755.7 653 63.4
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.7e-213 746.5 640 61.9
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 3.9e-210 735.3 639 63.1
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 7.6e-206 721.1 642 64.0
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.7e-205 719.9 624 64.4
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 6.2e-200 701.4 643 58.8
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.9e-196 689.9 539 70.5
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 4.5e-190 668.7 635 60.9
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 2.9e-189 666.0 649 56.2
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.4e-188 662.9 631 60.4
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 1.1e-185 654.1 648 57.6
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 1.4e-183 647.1 647 57.0
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 1.0e-165 587.8 622 55.3
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 5.3e-159 565.5 644 53.4
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.2e-158 564.3 544 59.7
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 5.7e-145 518.8 631 50.7
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 2.4e-143 513.5 669 46.2
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 2.7e-142 510.0 663 44.5
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 3.5e-126 456.4 655 42.6
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 5.8e-121 439.1 351 66.4
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 1.3e-117 427.9 323 73.4
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 7.6e-97 359.0 243 72.4
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 9.0e-90 335.5 384 50.5
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 9.0e-66 255.8 300 52.0
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 2.9e-40 171.0 115 80.9
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 7.2e-39 166.4 562 28.8
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 2.8e-35 154.5 109 70.6
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 4.0e-21 107.5 91 64.8
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 2.6e-20 104.8 114 57.0
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 1.8e-10 72.0 44 77.3
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 3.5e-09 67.8 107 41.1
SalBow4G0612 Salvia bowleyana HOM05D005586 ORTHO05D360416 1.1e-07 62.8 46 60.9


User provided reference genes

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