Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g13180 Coffea canephora HOM05D005560 ORTHO05D006862 1.7e-85 319.3 161 100.0
Lj6E694T0 Lonicera japonica HOM05D005560 ORTHO05D006862 1.2e-46 190.3 134 73.1
Dinv15139 Davidia involucrata HOM05D005560 ORTHO05D006862 1.5e-46 189.9 121 77.7
Nn3g21792 Nelumbo nucifera HOM05D005560 ORTHO05D006862 2.6e-46 189.1 121 77.7
Dinv44258 Davidia involucrata HOM05D005560 ORTHO05D006862 1.3e-45 186.8 121 76.0
Solyc01g058280.4 Solanum lycopersicum HOM05D005560 ORTHO05D006862 6.4e-45 184.5 121 76.0
Nitab4.5_0012592g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 8.4e-45 184.1 121 75.2
Sopen01g023770 Solanum pennellii HOM05D005560 ORTHO05D006862 1.9e-44 183.0 121 75.2
MSTRG.3846 Avicennia marina HOM05D005560 ORTHO05D006862 5.5e-44 181.4 126 70.6
Peaxi162Scf00228g00733 Petunia axillaris HOM05D005560 ORTHO05D006862 9.3e-44 180.6 132 70.5
vmacro09713 Vaccinium macrocarpon HOM05D005560 ORTHO05D006862 2.1e-43 179.5 126 73.0
Manes.11G109500 Manihot esculenta HOM05D005560 ORTHO05D006862 2.7e-43 179.1 119 73.9
Prupe.1G113300 Prunus persica HOM05D005560 ORTHO05D006862 2.7e-43 179.1 121 71.9
Sc13g0007210 Simmondsia chinensis HOM05D005560 ORTHO05D006862 4.6e-43 178.3 121 75.2
CAN.G938.2 Capsicum annuum HOM05D005560 ORTHO05D006862 6.0e-43 177.9 121 73.6
Lj6g0013029 Lotus japonicus HOM05D005560 ORTHO05D006862 7.9e-43 177.6 121 73.6
CANSAT78G0499 Cannabis sativa HOM05D005560 ORTHO05D006862 1.3e-42 176.8 121 74.4
Manes.11G060400 Manihot esculenta HOM05D005560 ORTHO05D006862 1.3e-42 176.8 119 73.1
Sed0008051 Sechium edule HOM05D005560 ORTHO05D006862 1.8e-42 176.4 121 73.6
FAN12G4019 Fragaria x ananassa HOM05D005560 ORTHO05D006862 2.3e-42 176.0 129 66.7
CDE06G0356 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 3.0e-42 175.6 121 72.7
Lalb_Chr18g0058561 Lupinus albus HOM05D005560 ORTHO05D006862 3.0e-42 175.6 121 71.9
TAR371G1140 Trochodendron aralioides HOM05D005560 ORTHO05D006862 3.0e-42 175.6 125 68.0
Potri.008G102200 Populus trichocarpa HOM05D005560 ORTHO05D006862 3.9e-42 175.3 121 74.4
TWI09G0868 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 5.1e-42 174.9 121 72.7
VMungo0540G1255 Vigna mungo HOM05D005560 ORTHO05D006862 5.1e-42 174.9 117 75.2
Lalb_Chr20g0120691 Lupinus albus HOM05D005560 ORTHO05D006862 1.1e-41 173.7 121 71.1
Medtr2g097970 Medicago truncatula HOM05D005560 ORTHO05D006862 1.1e-41 173.7 121 71.9
Phvul.006G120000 Phaseolus vulgaris HOM05D005560 ORTHO05D006862 1.1e-41 173.7 117 74.4
FAN07G2916 Fragaria x ananassa HOM05D005560 ORTHO05D006862 1.5e-41 173.3 121 69.4
Medtr2g033590 Medicago truncatula HOM05D005560 ORTHO05D006862 1.5e-41 173.3 121 71.1
Glyma.17G036700 Glycine max HOM05D005560 ORTHO05D006862 1.9e-41 172.9 121 73.6
Glyma.15G138200 Glycine max HOM05D005560 ORTHO05D006862 2.5e-41 172.6 121 71.9
Duzib212G0918 Durio zibethinus HOM05D005560 ORTHO05D006862 3.3e-41 172.2 121 70.2
ECA246G4816 Erigeron canadensis HOM05D005560 ORTHO05D006862 4.3e-41 171.8 121 73.6
Gohir.A02G055900 Gossypium hirsutum HOM05D005560 ORTHO05D006862 4.3e-41 171.8 121 71.1
Gohir.A10G174500 Gossypium hirsutum HOM05D005560 ORTHO05D006862 4.3e-41 171.8 121 68.6
Gohir.D02G061100 Gossypium hirsutum HOM05D005560 ORTHO05D006862 4.3e-41 171.8 121 71.1
CiPaw.01G134900 Carya illinoinensis HOM05D005560 ORTHO05D006862 7.4e-41 171.0 121 69.4
RcHm_v2.0_Chr4g0425981 Rosa chinensis HOM05D005560 ORTHO05D006862 9.6e-41 170.6 110 74.5
THA.LOC104827102 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 9.6e-41 170.6 121 68.6
Atru.chr4.3063 Acer truncatum HOM05D005560 ORTHO05D006862 2.1e-40 169.5 121 71.1
Ca_00962_v3 Cicer arietinum L. HOM05D005560 ORTHO05D006862 2.1e-40 169.5 121 70.2
TPR.G33875 Trifolium pratense HOM05D005560 ORTHO05D006862 2.1e-40 169.5 121 71.1
GSVIVG01034955001 Vitis vinifera HOM05D001281 ORTHO05D001139 2.1e-40 169.5 125 66.4
CsaV3_1G038810 Cucumis sativus L. HOM05D005560 ORTHO05D006862 2.8e-40 169.1 121 71.1
FvH4_4g20620 Fragaria vesca HOM05D005560 ORTHO05D006862 3.7e-40 168.7 121 68.6
Migut.G00039 Erythranthe guttata HOM05D005560 ORTHO05D006862 6.2e-40 167.9 111 72.1
MD16G1149600 Malus domestica HOM05D005560 ORTHO05D006862 6.2e-40 167.9 111 72.1
PGSC0003DMG401029058 Solanum tuberosum HOM05D005560 ORTHO05D006862 6.2e-40 167.9 114 72.8
TPR.G30159 Trifolium pratense HOM05D005560 ORTHO05D006862 6.2e-40 167.9 111 74.8
MD13G1149300 Malus domestica HOM05D005560 ORTHO05D006862 8.2e-40 167.5 111 72.1
Potri.010G148600 Populus trichocarpa HOM05D005560 ORTHO05D006862 1.4e-39 166.8 121 71.9
CAN.G1860.1 Capsicum annuum HOM05D005560 ORTHO05D006862 2.4e-39 166.0 130 65.4
COL.COLO4_34571 Corchorus olitorius HOM05D005560 ORTHO05D006862 4.0e-39 165.2 114 69.3
HanXRQChr01g0022341 Helianthus annuus HOM05D005560 ORTHO05D006862 4.0e-39 165.2 101 79.2
PSO782G0665 Papaver somniferum HOM05D005560 ORTHO05D006862 4.0e-39 165.2 114 71.1
PSO063G2615 Papaver somniferum HOM05D005560 ORTHO05D006862 5.3e-39 164.9 114 70.2
CiPaw.02G072600 Carya illinoinensis HOM05D005560 ORTHO05D006862 9.0e-39 164.1 111 72.1
Oeu048287.1 Olea europaea HOM05D005560 ORTHO05D006862 5.8e-38 161.4 103 72.8
Cpa.g.sc9.16 Carica papaya HOM05D005560 ORTHO05D006862 7.6e-38 161.0 121 65.3
CARHR287970 Cardamine hirsuta HOM05D005560 ORTHO05D006862 1.0e-37 160.6 111 70.3
Hma1.2p1_1400F.1_g280950 Hydrangea macrophylla HOM05D005560 ORTHO05D006862 1.0e-37 160.6 104 76.0
CSS0010593 Camellia sinensis var. sinensis HOM05D005560 ORTHO05D006862 1.3e-37 160.2 114 69.3
Gohir.D10G181000 Gossypium hirsutum HOM05D005560 ORTHO05D006862 3.8e-37 158.7 121 65.3
QL06p012974 Quercus lobata HOM05D005560 ORTHO05D006862 3.8e-37 158.7 114 64.9
Sabra10G0114700 Salix brachista HOM05D005560 ORTHO05D006862 3.8e-37 158.7 123 65.0
Thhalv10005160m.g Eutrema salsugineum HOM05D005560 ORTHO05D006862 4.9e-37 158.3 111 69.4
arahy.Tifrunner.gnm1.ann1.JWH7Q7 Arachis hypogaea HOM05D005560 ORTHO05D006862 6.5e-37 157.9 112 69.6
MELO3C015305.2 Cucumis melo HOM05D005560 ORTHO05D006862 6.5e-37 157.9 114 69.3
Gorai.005G068700 Gossypium raimondii HOM05D005560 ORTHO05D006862 6.5e-37 157.9 146 58.9
DCAR_026978 Daucus carota HOM05D005560 ORTHO05D006862 8.4e-37 157.5 104 74.0
Sp2g19850 Schrenkiella parvula HOM05D005560 ORTHO05D006862 8.4e-37 157.5 111 69.4
SGA_v2.0_scaffold157G37338 Striga asiatica HOM05D005560 ORTHO05D006862 8.4e-37 157.5 117 65.8
AT5G49540 Arabidopsis thaliana HOM05D005560 ORTHO05D006862 1.1e-36 157.1 111 68.5
Ciclev10006078m.g Citrus clementina HOM05D005560 ORTHO05D006862 1.1e-36 157.1 101 77.2
Nn8g38759 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.1e-36 157.1 108 72.2
PGR004G2070 Punica granatum HOM05D005560 ORTHO05D006862 1.1e-36 157.1 121 70.2
AL8G23330 Arabidopsis lyrata HOM05D005560 ORTHO05D006862 1.9e-36 156.4 111 68.5
THA.LOC104818873 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 2.5e-36 156.0 121 63.6
SEGI_13216 Sequoiadendron giganteum HOM05D005560 ORTHO05D006862 3.2e-36 155.6 122 65.6
BcaC04g23733 Brassica carinata HOM05D005560 ORTHO05D006862 5.5e-36 154.8 111 67.6
A09p04870 Brassica napus HOM05D005560 ORTHO05D006862 5.5e-36 154.8 130 60.8
Carub.0008s0942 Capsella rubella HOM05D005560 ORTHO05D006862 5.5e-36 154.8 111 67.6
BcaB04g19617 Brassica carinata HOM05D005560 ORTHO05D006862 7.1e-36 154.5 111 67.6
C09p05260 Brassica napus HOM05D005560 ORTHO05D006862 7.1e-36 154.5 111 67.6
BolC9t53453H Brassica oleracea HOM05D005560 ORTHO05D006862 7.1e-36 154.5 111 67.6
CAN.G484.71 Capsicum annuum HOM05D005560 ORTHO05D006862 7.1e-36 154.5 121 65.3
unitig_37.g12416 Utricularia gibba HOM05D005560 ORTHO05D007484 2.1e-35 152.9 106 67.9
Gorai.011G202500 Gossypium raimondii HOM05D005560 ORTHO05D006862 2.7e-35 152.5 121 63.6
A06p38280 Brassica napus HOM05D005560 ORTHO05D006862 4.6e-35 151.8 104 71.2
Ah.13g071490 Amaranthus hybridus HOM05D005560 ORTHO05D006862 2.3e-34 149.4 94 74.5
Nitab4.5_0002561g0080 Nicotiana tabacum HOM05D005560 ORTHO05D006862 2.3e-34 149.4 104 71.2
MBI10_g06741_MAGBIO Magnolia biondii HOM05D005560 ORTHO05D006862 3.9e-34 148.7 104 69.2
Zm00001eb343110 Zea mays HOM05D005560 ORTHO05D006862 6.7e-34 147.9 103 70.9
CDE07G1301 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 1.1e-33 147.1 88 80.7
Haze_01347 Corylus avellana HOM05D005560 ORTHO05D006862 1.1e-33 147.1 104 67.3
arahy.Tifrunner.gnm1.ann1.K4HITJ Arachis hypogaea HOM05D005560 ORTHO05D006862 1.5e-33 146.7 130 58.5
HanXRQChr10g0310551 Helianthus annuus HOM05D005560 ORTHO05D006862 1.5e-33 146.7 88 81.8
Hund11992 Selenicereus undatus HOM05D005560 ORTHO05D006862 3.3e-33 145.6 109 68.8
EL10Ac3g05546 Beta vulgaris HOM05D005560 ORTHO05D006862 5.7e-33 144.8 106 68.9
Zm00001eb295100 Zea mays HOM05D005560 ORTHO05D006862 9.7e-33 144.1 103 68.9
Lsat_1_v5_gn_6_116081 Lactuca sativa HOM05D005560 ORTHO05D006862 1.3e-32 143.7 104 71.2
Mapoly0008s0274 Marchantia polymorpha HOM05D005560 ORTHO05D006862 2.2e-32 142.9 111 61.3
TWI53G0383 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 2.2e-32 142.9 104 68.3
Glyma.09G033400 Glycine max HOM05D005560 ORTHO05D006862 3.7e-32 142.1 114 65.8
ClCG03G017390 Citrullus lanatus HOM05D005560 ORTHO05D006862 4.8e-32 141.7 94 72.3
Sed0013449 Sechium edule HOM05D005560 ORTHO05D006862 4.8e-32 141.7 107 67.3
HPP92_015326 Vanilla planifolia HOM05D005560 ORTHO05D006862 4.8e-32 141.7 99 70.7
SalBow8G4800 Salvia bowleyana HOM05D005560 ORTHO05D006862 8.2e-32 141.0 109 60.6
Aa31LG11G8340 Aethionema arabicum HOM05D005560 ORTHO05D006862 1.1e-31 140.6 104 64.4
Aqoxy5G02923 Aquilegia oxysepala HOM05D005560 ORTHO05D006862 1.4e-31 140.2 104 66.3
BraA09t36124Z Brassica rapa HOM05D005560 ORTHO05D006862 3.1e-31 139.0 125 56.0
Lsat_1_v5_gn_3_139661 Lactuca sativa HOM05D005560 ORTHO05D006862 6.9e-31 137.9 100 70.0
BolC7t44528H Brassica oleracea HOM05D005560 ORTHO05D006862 9.0e-31 137.5 99 65.7
Migut.O00585 Erythranthe guttata HOM05D005560 ORTHO05D006862 9.0e-31 137.5 128 57.8
Psat0s5068g0040 Pisum sativum HOM05D005560 ORTHO05D006862 9.0e-31 137.5 104 65.4
ATR0598G271 Amborella trichopoda HOM05D005560 ORTHO05D006862 1.5e-30 136.7 99 69.7
QL02p001630 Quercus lobata HOM05D005560 ORTHO05D006862 1.5e-30 136.7 91 69.2
Thecc.04G305600 Theobroma cacao HOM05D005560 ORTHO05D006862 2.6e-30 136.0 110 63.6
AUR62016242 Chenopodium quinoa HOM05D005560 ORTHO05D006862 4.5e-30 135.2 104 65.4
Eucgr.F02752 Eucalyptus grandis HOM05D005560 ORTHO05D006862 2.2e-29 132.9 136 53.7
AagrBONN_evm.TU.Sc2ySwM_362.2649 Anthoceros agrestis HOM05D005560 ORTHO05D006862 1.6e-27 126.7 109 57.8
SMO117G0178 Selaginella moellendorffii HOM05D005560 ORTHO05D006862 4.6e-27 125.2 101 58.4
BraA06t26743Z Brassica rapa HOM05D005560 ORTHO05D006862 1.1e-25 120.6 92 65.2
AagrBONN_evm.TU.Sc2ySwM_340.65 Anthoceros agrestis HOM05D005560 ORTHO05D006862 2.8e-24 115.9 93 62.4
Oeu052158.1 Olea europaea HOM05D005560 ORTHO05D006862 1.8e-23 113.2 109 53.2
CBR_g22909 Chara braunii HOM05D005560 ORTHO05D006862 2.4e-23 112.8 112 50.0
AUR62032779 Chenopodium quinoa HOM05D005560 ORTHO05D006862 4.5e-22 108.6 75 73.3
Nitab4.5_0008521g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 7.7e-22 107.8 70 74.3
arahy.Tifrunner.gnm1.ann1.CCFX3U Arachis hypogaea HOM05D001281 ORTHO05D001139 1.8e-18 96.7 120 53.3
Nn8g41304 Nelumbo nucifera HOM05D005560 ORTHO05D006862 2.6e-17 92.8 56 82.1
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 2.2e-16 89.7 79 58.2
PRCOL_00001634 Prasinoderma coloniale HOM05D005560 ORTHO05D006862 1.5e-14 83.6 111 44.1
Nn1g07816 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.4e-12 77.0 66 60.6
TWI73G0491 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 2.7e-11 72.8 52 67.3
MCO06G009 Micromonas commoda HOM05D005560 ORTHO05D006862 6.7e-10 68.2 101 39.6
arahy.Tifrunner.gnm1.ann1.NI9QGM Arachis hypogaea HOM05D005560 ORTHO05D006862 2.0e-09 66.6 81 48.1
Cre14.g614250 Chlamydomonas reinhardtii HOM05D005560 ORTHO05D006862 7.0e-07 58.2 99 31.3


User provided reference genes

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