Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g12750 Coffea canephora HOM05D003091 ORTHO05D003671 1.6e-36 155.6 81 100.0
Actinidia06957 Actinidia chinensis HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
arahy.Tifrunner.gnm1.ann1.H5V5GF Arachis hypogaea HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
Cfa013345 Carpinus fangiana HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
CiPaw.07G207100 Carya illinoinensis HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
Ca_15619_v3 Cicer arietinum L. HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
Cc01_g05530 Coffea canephora HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
COL.COLO4_05198 Corchorus olitorius HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
Haze_21853 Corylus avellana HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
Duzib168G2072 Durio zibethinus HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
Glyma.04G080200 Glycine max HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
Glyma.06G081900 Glycine max HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
Glyma.14G142100 Glycine max HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
Gohir.A05G071500 Gossypium hirsutum HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
Gohir.D05G074400 Gossypium hirsutum HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
Gorai.009G075500 Gossypium raimondii HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
Lj1C287G1 Lonicera japonica HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
Medtr3g109932 Medicago truncatula HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
PGR054G0002 Punica granatum HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
PGR119G0724 Punica granatum HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
Thecc.09G249800 Theobroma cacao HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
TAR369G0586 Trochodendron aralioides HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
GSVIVG01037261001 Vitis vinifera HOM05D003091 ORTHO05D003671 4.3e-21 104.4 80 73.8
Dinv36179 Davidia involucrata HOM05D003091 ORTHO05D003671 5.6e-21 104.0 80 72.5
Nn2g14838 Nelumbo nucifera HOM05D003091 ORTHO05D003671 5.6e-21 104.0 80 73.8
Nn7g36666 Nelumbo nucifera HOM05D003091 ORTHO05D003671 5.6e-21 104.0 80 73.8
SEGI_37865 Sequoiadendron giganteum HOM05D003091 ORTHO05D003671 5.6e-21 104.0 80 73.8
TWI60G1477 Tripterygium wilfordii HOM05D003091 ORTHO05D003671 5.6e-21 104.0 80 73.8
TAR623G1108 Trochodendron aralioides HOM05D003091 ORTHO05D003671 5.6e-21 104.0 80 72.5
Atru.chr3.2779 Acer truncatum HOM05D003091 ORTHO05D003671 9.5e-21 103.2 80 72.5
Actinidia23988 Actinidia chinensis HOM05D003091 ORTHO05D003671 9.5e-21 103.2 80 72.5
MD08G1118300 Malus domestica HOM05D003091 ORTHO05D003671 9.5e-21 103.2 80 72.5
MD15G1097600 Malus domestica HOM05D003091 ORTHO05D003671 9.5e-21 103.2 80 72.5
Oeu025901.1 Olea europaea HOM05D003091 ORTHO05D003671 9.5e-21 103.2 80 72.5
Potri.001G276700 Populus trichocarpa HOM05D003091 ORTHO05D003671 9.5e-21 103.2 80 72.5
Potri.009G071600 Populus trichocarpa HOM05D003091 ORTHO05D003671 9.5e-21 103.2 80 72.5
Sed0016432 Sechium edule HOM05D003091 ORTHO05D003671 9.5e-21 103.2 80 72.5
TAR633G0445 Trochodendron aralioides HOM05D003091 ORTHO05D003671 9.5e-21 103.2 80 71.2
HPP92_020481 Vanilla planifolia HOM05D003091 ORTHO05D003671 9.5e-21 103.2 80 72.5
CSS0031638 Camellia sinensis var. sinensis HOM05D003091 ORTHO05D003671 1.2e-20 102.8 80 72.5
CSS0037821 Camellia sinensis var. sinensis HOM05D003091 ORTHO05D003671 1.2e-20 102.8 80 72.5
CiPaw.08G023500 Carya illinoinensis HOM05D003091 ORTHO05D003671 1.2e-20 102.8 80 72.5
DCAR_029992 Daucus carota HOM05D003091 ORTHO05D003671 1.2e-20 102.8 80 72.5
Duzib170G0109 Durio zibethinus HOM05D003091 ORTHO05D003671 1.2e-20 102.8 80 72.5
Phvul.009G106300 Phaseolus vulgaris HOM05D003091 ORTHO05D003671 1.2e-20 102.8 80 72.5
TWI34G0762 Tripterygium wilfordii HOM05D003091 ORTHO05D003671 1.2e-20 102.8 80 72.5
vmacro04023 Vaccinium macrocarpon HOM05D003091 ORTHO05D003671 1.2e-20 102.8 80 72.5
arahy.Tifrunner.gnm1.ann1.Y550S7 Arachis hypogaea HOM05D003091 ORTHO05D003671 1.6e-20 102.4 80 71.2
Oeu043280.2 Olea europaea HOM05D003091 ORTHO05D003671 1.6e-20 102.4 80 72.5
Migut.N02369 Erythranthe guttata HOM05D003091 ORTHO05D003671 2.1e-20 102.1 80 71.2
FvH4_2g36110 Fragaria vesca HOM05D003091 ORTHO05D003671 2.1e-20 102.1 80 72.5
FAN15G0484 Fragaria x ananassa HOM05D003091 ORTHO05D003671 2.1e-20 102.1 80 72.5
FAN27G0636 Fragaria x ananassa HOM05D003091 ORTHO05D003671 2.1e-20 102.1 80 72.5
ClCG11G014020 Citrullus lanatus HOM05D003091 ORTHO05D003671 2.8e-20 101.7 80 71.2
MELO3C003581.2 Cucumis melo HOM05D003091 ORTHO05D003671 2.8e-20 101.7 80 71.2
CsaV3_3G047430 Cucumis sativus L. HOM05D003091 ORTHO05D003671 2.8e-20 101.7 80 71.2
Duzib150G1361 Durio zibethinus HOM05D003091 ORTHO05D003671 2.8e-20 101.7 80 71.2
Eucgr.J00700 Eucalyptus grandis HOM05D003091 ORTHO05D003671 2.8e-20 101.7 80 71.2
Gohir.A07G120600 Gossypium hirsutum HOM05D003091 ORTHO05D003671 2.8e-20 101.7 80 71.2
Gohir.D07G124800 Gossypium hirsutum HOM05D003091 ORTHO05D003671 2.8e-20 101.7 80 71.2
Gorai.001G134600 Gossypium raimondii HOM05D003091 ORTHO05D003671 2.8e-20 101.7 80 71.2
Lj1g0011096 Lotus japonicus HOM05D003091 ORTHO05D003671 2.8e-20 101.7 80 71.2
Prupe.1G452500 Prunus persica HOM05D003091 ORTHO05D003671 2.8e-20 101.7 80 71.2
Sed0002878 Sechium edule HOM05D003091 ORTHO05D003671 2.8e-20 101.7 80 71.2
VMungo1309G1449 Vigna mungo HOM05D003091 ORTHO05D003671 2.8e-20 101.7 80 71.2
Aqoxy2G00365 Aquilegia oxysepala HOM05D003091 ORTHO05D003671 3.6e-20 101.3 80 71.2
CANSAT25G3396 Cannabis sativa HOM05D003091 ORTHO05D003671 3.6e-20 101.3 80 71.2
CDE02G3432 Ceratophyllum demersum HOM05D003091 ORTHO05D003671 3.6e-20 101.3 80 71.2
Ciclev10015833m.g Citrus clementina HOM05D003091 ORTHO05D003671 3.6e-20 101.3 80 71.2
Manes.01G179800 Manihot esculenta HOM05D003091 ORTHO05D003671 3.6e-20 101.3 80 71.2
Nitab4.5_0000730g0130 Nicotiana tabacum HOM05D003091 ORTHO05D003671 3.6e-20 101.3 80 72.5
Nitab4.5_0001500g0090 Nicotiana tabacum HOM05D003091 ORTHO05D003671 3.6e-20 101.3 80 72.5
Peaxi162Scf00004g04618 Petunia axillaris HOM05D003091 ORTHO05D003671 3.6e-20 101.3 80 72.5
Rhsim01G0194700 Rhododendron simsii HOM05D003091 ORTHO05D003671 3.6e-20 101.3 80 71.2
Rhsim13G0211100 Rhododendron simsii HOM05D003091 ORTHO05D003671 3.6e-20 101.3 80 71.2
PGSC0003DMG400009454 Solanum tuberosum HOM05D003091 ORTHO05D003671 3.6e-20 101.3 80 72.5
Zm00001eb209380 Zea mays HOM05D003091 ORTHO05D003671 3.6e-20 101.3 80 71.2
ATR0580G276 Amborella trichopoda HOM05D003091 ORTHO05D003671 4.7e-20 100.9 80 71.2
arahy.Tifrunner.gnm1.ann1.0Z0DIR Arachis hypogaea HOM05D003091 ORTHO05D003671 4.7e-20 100.9 80 70.0
Migut.D00654 Erythranthe guttata HOM05D003091 ORTHO05D003671 4.7e-20 100.9 80 70.0
Hund07443 Selenicereus undatus HOM05D003091 ORTHO05D003671 4.7e-20 100.9 80 71.2
FAN20G1214 Fragaria x ananassa HOM05D003091 ORTHO05D003671 6.2e-20 100.5 80 71.2
Hma1.2p1_0129F.1_g060120 Hydrangea macrophylla HOM05D003091 ORTHO05D003671 6.2e-20 100.5 80 72.5
MBI13_g30131_MAGBIO Magnolia biondii HOM05D003091 ORTHO05D003671 6.2e-20 100.5 80 70.0
SGA_v2.0_scaffold496G52467 Striga asiatica HOM05D003091 ORTHO05D003671 6.2e-20 100.5 80 70.0
CAN.G917.5 Capsicum annuum HOM05D003091 ORTHO05D003671 8.0e-20 100.1 80 71.2
AUR62000182 Chenopodium quinoa HOM05D003091 ORTHO05D003671 8.0e-20 100.1 80 70.0
AUR62006534 Chenopodium quinoa HOM05D003091 ORTHO05D003671 8.0e-20 100.1 80 70.0
Lalb_Chr08g0243271 Lupinus albus HOM05D003091 ORTHO05D003671 8.0e-20 100.1 80 71.2
Nitab4.5_0000718g0270 Nicotiana tabacum HOM05D003091 ORTHO05D003671 8.0e-20 100.1 80 71.2
Nitab4.5_0005212g0030 Nicotiana tabacum HOM05D003091 ORTHO05D003671 8.0e-20 100.1 80 71.2
Peaxi162Scf00032g02617 Petunia axillaris HOM05D003091 ORTHO05D003671 8.0e-20 100.1 80 71.2
Psat0s3378g0040 Pisum sativum HOM05D003091 ORTHO05D003671 8.0e-20 100.1 80 71.2
Solyc01g008820.3 Solanum lycopersicum HOM05D003091 ORTHO05D003671 8.0e-20 100.1 80 71.2
Sopen01g004330 Solanum pennellii HOM05D003091 ORTHO05D003671 8.0e-20 100.1 80 71.2
TPR.G1379 Trifolium pratense HOM05D003091 ORTHO05D003671 8.0e-20 100.1 80 71.2
MSTRG.17631 Avicennia marina HOM05D003091 ORTHO05D003671 1.1e-19 99.8 79 70.9
CAN.G96.11 Capsicum annuum HOM05D003091 ORTHO05D003671 1.1e-19 99.8 80 71.2
Ca_12810_v3 Cicer arietinum L. HOM05D003091 ORTHO05D003671 1.1e-19 99.8 80 70.0
Manes.02G140400 Manihot esculenta HOM05D003091 ORTHO05D003671 1.1e-19 99.8 80 71.2
Os02g0117400 Oryza sativa ssp. japonica HOM05D003091 ORTHO05D003671 1.1e-19 99.8 80 70.0
Psat6g034320 Pisum sativum HOM05D003091 ORTHO05D003671 1.1e-19 99.8 80 70.0
RcHm_v2.0_Chr6g0305761 Rosa chinensis HOM05D003091 ORTHO05D003671 1.1e-19 99.8 80 71.2
Sabra09G0053900 Salix brachista HOM05D003091 ORTHO05D003671 1.1e-19 99.8 80 70.0
Hund21985 Selenicereus undatus HOM05D003091 ORTHO05D003671 1.1e-19 99.8 80 70.0
Solyc11g064790.2 Solanum lycopersicum HOM05D003091 ORTHO05D003671 1.1e-19 99.8 80 71.2
Sopen11g024530 Solanum pennellii HOM05D003091 ORTHO05D003671 1.1e-19 99.8 80 71.2
unitig_27.g25006 Utricularia gibba HOM05D003091 ORTHO05D003671 1.1e-19 99.8 80 70.0
THA.LOC104816927 Tarenaya hassleriana HOM05D003091 ORTHO05D003671 1.4e-19 99.4 80 70.0
THA.LOC104826452 Tarenaya hassleriana HOM05D003091 ORTHO05D003671 1.4e-19 99.4 80 71.2
Ah.06g194480 Amaranthus hybridus HOM05D000189 ORTHO05D000474 1.8e-19 99.0 80 68.8
EL10Ac4g10135 Beta vulgaris HOM05D003091 ORTHO05D003671 1.8e-19 99.0 80 68.8
EL10Ac4g10152 Beta vulgaris HOM05D003091 ORTHO05D003671 1.8e-19 99.0 80 68.8
EL10Ac4g10159 Beta vulgaris HOM05D001013 ORTHO05D004597 1.8e-19 99.0 80 68.8
Gorai.013G254000 Gossypium raimondii HOM05D003091 ORTHO05D003671 1.8e-19 99.0 80 70.0
Medtr1g008280 Medicago truncatula HOM05D003091 ORTHO05D003671 1.8e-19 99.0 80 70.0
Sc16g0011120 Simmondsia chinensis HOM05D003091 ORTHO05D003671 1.8e-19 99.0 80 70.0
PGSC0003DMG400022714 Solanum tuberosum HOM05D003091 ORTHO05D003671 1.8e-19 99.0 80 70.0
DCAR_002102 Daucus carota HOM05D003091 ORTHO05D003671 2.3e-19 98.6 80 68.8
Gohir.A13G219200 Gossypium hirsutum HOM05D003091 ORTHO05D003671 2.3e-19 98.6 80 70.0
Lsat_1_v5_gn_9_48160 Lactuca sativa HOM05D003091 ORTHO05D003671 4.0e-19 97.8 80 68.8
PSO339G4627 Papaver somniferum HOM05D003091 ORTHO05D003671 4.0e-19 97.8 80 68.8
PSO384G1550 Papaver somniferum HOM05D003091 ORTHO05D003671 4.0e-19 97.8 80 68.8
AL5G12770 Arabidopsis lyrata HOM05D003091 ORTHO05D003671 5.2e-19 97.4 80 68.8
AT2G03120 Arabidopsis thaliana HOM05D003091 ORTHO05D003671 5.2e-19 97.4 80 68.8
Carub.0005s0195 Capsella rubella HOM05D003091 ORTHO05D003671 5.2e-19 97.4 80 68.8
Lsat_1_v5_gn_8_26901 Lactuca sativa HOM05D003091 ORTHO05D003671 1.2e-18 96.3 80 68.8
Mapoly0057s0081 Marchantia polymorpha HOM05D003091 ORTHO05D003671 1.2e-18 96.3 80 67.5
TPR.G12114 Trifolium pratense HOM05D003091 ORTHO05D003671 1.2e-18 96.3 80 67.5
BcaB07g30310 Brassica carinata HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
BcaC03g17184 Brassica carinata HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
BcaC04g21506 Brassica carinata HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
BcaC06g31199 Brassica carinata HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
BcaC06g34018 Brassica carinata HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
A02p33230 Brassica napus HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
A06p43280 Brassica napus HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
A09p24090 Brassica napus HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
C02p51130 Brassica napus HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
C07p33670 Brassica napus HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
C09p30980 Brassica napus HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
BolC2t11200H Brassica oleracea HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
BolC7t43877H Brassica oleracea HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
BolC9t55957H Brassica oleracea HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
BraA02t08347Z Brassica rapa HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
BraA06t27214Z Brassica rapa HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
BraA09t38009Z Brassica rapa HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
CSS0001188 Camellia sinensis var. sinensis HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 68.8
CSS0007409 Camellia sinensis var. sinensis HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 68.8
CARHR145460 Cardamine hirsuta HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
Thhalv10004551m.g Eutrema salsugineum HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
Sp2g14090 Schrenkiella parvula HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
SMO172G0078 Selaginella moellendorffii HOM05D003091 ORTHO05D003671 1.5e-18 95.9 80 67.5
ECA232G2856 Erigeron canadensis HOM05D003091 ORTHO05D003671 2.0e-18 95.5 80 67.5
Pp3c3_24000 Physcomitrium patens HOM05D003091 ORTHO05D003671 2.0e-18 95.5 80 66.2
Pp3c3_24020 Physcomitrium patens HOM05D003091 ORTHO05D003671 2.0e-18 95.5 80 66.2
BcaB07g30686 Brassica carinata HOM05D003091 ORTHO05D003671 3.4e-18 94.7 80 66.2
HanXRQChr08g0216751 Helianthus annuus HOM05D003091 ORTHO05D003671 5.8e-18 94.0 80 66.2
HanXRQChr13g0388471 Helianthus annuus HOM05D003091 ORTHO05D003671 5.8e-18 94.0 80 67.5
SGA_v2.0_scaffold29G12260 Striga asiatica HOM05D003091 ORTHO05D003671 5.8e-18 94.0 81 67.9
CDE06G0965 Ceratophyllum demersum HOM05D003091 ORTHO05D003671 1.3e-17 92.8 73 71.2
ECA233G4335 Erigeron canadensis HOM05D003091 ORTHO05D003671 1.3e-17 92.8 80 66.2
Lalb_Chr23g0269441 Lupinus albus HOM05D003091 ORTHO05D003671 1.3e-17 92.8 80 67.5
Aa31LG10G9280 Aethionema arabicum HOM05D003091 ORTHO05D003671 3.7e-17 91.3 80 65.0
CBR_g39566 Chara braunii HOM05D003091 ORTHO05D003671 6.4e-17 90.5 80 63.8
arahy.Tifrunner.gnm1.ann1.IEZM4M Arachis hypogaea HOM05D003091 ORTHO05D003671 8.3e-17 90.1 52 88.5
Dinv05057 Davidia involucrata HOM05D003091 ORTHO05D003671 1.1e-16 89.7 52 86.5
MBI19_g08870_MAGBIO Magnolia biondii HOM05D003091 ORTHO05D003671 4.1e-16 87.8 52 84.6
Cc03_g10790 Coffea canephora HOM05D003091 ORTHO05D003671 5.4e-16 87.4 84 66.7
Lalb_Chr11g0064331 Lupinus albus HOM05D003091 ORTHO05D003671 5.4e-16 87.4 52 84.6
Sc16g0011130 Simmondsia chinensis HOM05D003091 ORTHO05D003671 9.2e-16 86.7 80 62.5
Zm00001eb230050 Zea mays HOM05D003091 ORTHO05D003671 2.7e-15 85.1 69 68.1
Cc00_g32870 Coffea canephora HOM05D003091 ORTHO05D003671 3.5e-15 84.7 78 65.4
Cc01_g06220 Coffea canephora HOM05D003091 ORTHO05D003671 4.6e-15 84.3 43 100.0
TPR.G30556 Trifolium pratense HOM05D003091 ORTHO05D003671 2.5e-13 78.6 79 59.5
Gohir.D13G222900 Gossypium hirsutum HOM05D003091 ORTHO05D003671 9.5e-13 76.6 89 58.4
Cre07.g332550 Chlamydomonas reinhardtii HOM05D003091 ORTHO05D003671 2.8e-12 75.1 84 53.6
PRCOL_00004266 Prasinoderma coloniale HOM05D003091 ORTHO05D003671 8.1e-12 73.6 78 55.1
Os05g0436400 Oryza sativa ssp. japonica HOM05D003091 ORTHO05D003671 1.4e-11 72.8 47 78.7
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 1.8e-11 72.4 43 83.7
Haze_26116 Corylus avellana HOM05D003091 ORTHO05D003671 2.0e-10 68.9 84 50.0
VMungo0720G1736 Vigna mungo HOM05D003091 ORTHO05D003671 5.8e-10 67.4 73 50.7
Medtr5g031710 Medicago truncatula HOM05D003091 ORTHO05D003671 7.5e-10 67.0 40 80.0
Cc03_g13830 Coffea canephora HOM05D003091 ORTHO05D003671 5.4e-08 60.8 66 59.1
Cfa027050 Carpinus fangiana HOM05D003091 ORTHO05D122445 6.0e-07 57.4 80 41.2
Medtr3g109968 Medicago truncatula HOM05D003091 ORTHO05D003671 1.7e-06 55.8 50 64.0


User provided reference genes

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