Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 3.0e-131 471.9 240 100.0
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 8.5e-110 400.6 221 89.1
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 3.2e-109 398.7 232 84.5
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 3.2e-109 398.7 232 84.5
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 3.2e-109 398.7 239 82.8
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 4.2e-109 398.3 232 84.1
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 4.2e-109 398.3 232 84.1
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 7.2e-109 397.5 240 82.9
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 9.4e-109 397.1 232 84.1
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 9.4e-109 397.1 232 83.6
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 9.4e-109 397.1 240 83.8
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 2.7e-108 395.6 240 82.9
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 4.7e-108 394.8 221 87.3
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 4.7e-108 394.8 230 83.9
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 4.7e-108 394.8 228 84.2
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 8.0e-108 394.0 232 82.3
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 8.0e-108 394.0 240 82.9
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 1.0e-107 393.7 240 83.3
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 1.0e-107 393.7 241 81.7
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 1.0e-107 393.7 240 82.5
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 1.8e-107 392.9 233 82.8
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 2.3e-107 392.5 231 83.1
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 2.3e-107 392.5 232 81.0
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 2.3e-107 392.5 219 88.1
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 6.8e-107 391.0 240 82.1
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 2.0e-106 389.4 240 82.9
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 5.7e-106 387.9 221 85.5
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 5.7e-106 387.9 219 85.8
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 5.7e-106 387.9 236 81.8
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 5.7e-106 387.9 231 82.7
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 5.7e-106 387.9 240 81.2
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 9.8e-106 387.1 230 81.7
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 9.8e-106 387.1 239 80.8
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 1.3e-105 386.7 219 86.3
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 1.7e-105 386.3 240 79.6
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 3.7e-105 385.2 221 85.1
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 8.3e-105 384.0 240 78.8
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 8.3e-105 384.0 232 82.8
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 1.1e-104 383.6 240 78.8
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 1.4e-104 383.3 240 78.8
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 1.4e-104 383.3 240 79.2
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 3.1e-104 382.1 221 84.2
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 3.1e-104 382.1 221 84.2
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 5.4e-104 381.3 240 78.8
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 7.0e-104 380.9 240 77.9
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 7.0e-104 380.9 240 78.3
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 9.1e-104 380.6 217 85.3
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 2.0e-103 379.4 217 85.3
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 2.0e-103 379.4 236 80.9
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 2.0e-103 379.4 240 78.3
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 2.7e-103 379.0 233 81.1
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 3.5e-103 378.6 221 83.3
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 4.5e-103 378.3 223 82.1
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 7.7e-103 377.5 240 77.1
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 1.0e-102 377.1 240 77.5
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 1.3e-102 376.7 240 78.3
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 1.3e-102 376.7 227 82.4
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 1.7e-102 376.3 240 78.3
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 2.2e-102 375.9 240 77.1
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 3.8e-102 375.2 219 83.1
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 3.8e-102 375.2 221 82.4
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 5.0e-102 374.8 240 79.6
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 6.5e-102 374.4 240 78.8
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 6.5e-102 374.4 240 77.9
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 8.5e-102 374.0 232 78.9
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 2.5e-101 372.5 232 78.9
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 2.5e-101 372.5 240 78.3
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 2.5e-101 372.5 232 78.0
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 4.2e-101 371.7 240 77.5
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 5.5e-101 371.3 240 77.9
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 5.5e-101 371.3 221 81.9
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 2.1e-100 369.4 240 77.1
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 2.8e-100 369.0 221 81.4
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 3.6e-100 368.6 227 81.1
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 1.4e-99 366.7 230 77.8
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 1.4e-99 366.7 230 77.8
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 1.8e-99 366.3 240 75.4
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 1.8e-99 366.3 240 76.7
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 1.8e-99 366.3 240 74.6
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 4.0e-99 365.2 234 77.8
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 1.2e-98 363.6 240 74.2
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 1.2e-98 363.6 241 75.5
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 1.2e-98 363.6 240 75.4
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 1.2e-98 363.6 227 78.0
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 1.5e-98 363.2 227 78.4
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 1.5e-98 363.2 240 75.0
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 2.0e-98 362.8 221 79.6
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 2.6e-98 362.5 240 75.8
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 2.6e-98 362.5 231 77.9
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 2.6e-98 362.5 220 80.9
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 3.4e-98 362.1 241 75.5
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 4.4e-98 361.7 240 75.8
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 4.4e-98 361.7 241 77.2
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 4.4e-98 361.7 241 77.2
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 5.7e-98 361.3 221 79.6
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 7.5e-98 360.9 220 82.7
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 2.8e-97 359.0 240 75.0
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 2.8e-97 359.0 304 63.2
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 3.7e-97 358.6 240 73.3
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 1.4e-96 356.7 220 79.1
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 1.4e-96 356.7 222 80.2
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 3.5e-95 352.1 222 78.4
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 5.9e-95 351.3 240 74.6
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 1.3e-94 350.1 218 78.0
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 5.0e-94 348.2 240 75.4
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 3.3e-93 345.5 257 68.9
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 2.3e-91 339.3 230 74.3
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 6.8e-91 337.8 220 74.1
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 6.8e-91 337.8 326 58.6
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 2.0e-90 336.3 240 72.1
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 2.6e-90 335.9 240 74.6
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 2.2e-89 332.8 187 87.7
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 4.6e-87 325.1 218 69.7
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 2.5e-85 319.3 198 80.8
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 9.5e-85 317.4 219 71.2
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 2.8e-84 315.8 240 67.1
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 2.8e-84 315.8 240 67.5
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 4.7e-84 315.1 217 67.3
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 4.7e-84 315.1 217 66.8
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 1.4e-83 313.5 189 80.4
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 5.2e-83 311.6 218 66.1
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 1.9e-80 303.1 192 75.5
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 3.2e-80 302.4 206 74.3
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 1.3e-78 297.0 236 66.9
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 5.4e-72 275.0 168 80.4
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 8.6e-70 267.7 197 68.0
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 5.6e-69 265.0 154 85.1
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 2.3e-67 259.6 228 61.0
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 2.9e-57 226.1 150 70.0
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 4.6e-55 218.8 222 51.4
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 2.6e-42 176.4 119 68.9
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 2.7e-39 166.4 107 80.4
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 6.9e-35 151.8 204 37.7
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 8.7e-30 134.8 97 73.2
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 3.2e-24 116.3 209 34.0
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 1.1e-08 64.7 74 43.2


User provided reference genes

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