Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 4.9e-52 207.6 112 100.0
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 2.0e-21 105.9 112 55.4
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 1.7e-20 102.8 112 52.7
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 3.8e-20 101.7 112 55.4
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 5.0e-20 101.3 110 54.5
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 6.5e-20 100.9 110 57.3
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 1.9e-19 99.4 110 56.4
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 7.2e-19 97.4 112 53.6
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 2.1e-18 95.9 111 55.0
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 4.7e-18 94.7 110 52.7
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 8.0e-18 94.0 112 51.8
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 1.8e-17 92.8 110 54.5
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 6.7e-17 90.9 110 53.6
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 1.2e-16 90.1 112 51.8
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 1.7e-15 86.3 112 50.9
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 1.7e-15 86.3 112 45.5
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 4.8e-15 84.7 112 51.8
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 1.1e-14 83.6 112 47.3
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 1.4e-14 83.2 80 55.0
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 4.1e-14 81.6 112 46.4
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 9.1e-14 80.5 112 46.4
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 1.2e-13 80.1 63 61.9
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 1.2e-13 80.1 74 59.5
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 1.2e-13 80.1 77 57.1
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 1.2e-13 80.1 112 46.4
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 1.2e-13 80.1 112 45.5
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 1.6e-13 79.7 112 42.9
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 1.6e-13 79.7 97 51.5
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 1.6e-13 79.7 86 53.5
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 2.7e-13 79.0 88 54.5
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 3.5e-13 78.6 72 61.1
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 4.5e-13 78.2 107 49.5
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 5.9e-13 77.8 112 43.8
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 5.9e-13 77.8 112 45.5
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 1.0e-12 77.0 43 86.0
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 1.0e-12 77.0 112 46.4
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 1.3e-12 76.6 112 42.9
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 1.3e-12 76.6 112 48.2
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 1.7e-12 76.3 93 49.5
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 1.7e-12 76.3 116 48.3
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 1.7e-12 76.3 116 48.3
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 1.7e-12 76.3 116 47.4
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 2.2e-12 75.9 52 71.2
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 2.9e-12 75.5 116 46.6
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 3.8e-12 75.1 112 43.8
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 5.0e-12 74.7 52 69.2
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 5.0e-12 74.7 52 69.2
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 5.0e-12 74.7 52 71.2
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 5.0e-12 74.7 91 46.2
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 6.5e-12 74.3 45 77.8
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 8.5e-12 73.9 112 45.5
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 8.5e-12 73.9 112 44.6
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 8.5e-12 73.9 59 62.7
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 1.1e-11 73.6 80 52.5
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 1.5e-11 73.2 112 42.9
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 1.9e-11 72.8 90 51.1
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 1.9e-11 72.8 113 43.4
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 1.9e-11 72.8 112 46.4
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 3.2e-11 72.0 115 46.1
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 3.2e-11 72.0 115 39.1
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 3.2e-11 72.0 115 39.1
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 3.2e-11 72.0 110 45.5
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 3.2e-11 72.0 114 43.0
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 4.2e-11 71.6 54 63.0
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 7.2e-11 70.9 62 54.8
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 7.2e-11 70.9 62 54.8
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 9.4e-11 70.5 53 67.9
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 9.4e-11 70.5 112 41.1
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 1.6e-10 69.7 112 40.2
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.6e-10 69.7 112 40.2
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 1.6e-10 69.7 112 42.0
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 2.1e-10 69.3 112 41.1
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 2.1e-10 69.3 51 70.6
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 2.1e-10 69.3 112 42.0
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 2.7e-10 68.9 43 76.7
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 3.6e-10 68.6 112 39.3
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 3.6e-10 68.6 89 42.7
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 4.7e-10 68.2 58 62.1
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 6.1e-10 67.8 73 58.9
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 8.0e-10 67.4 112 40.2
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 1.8e-09 66.2 49 63.3
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 3.0e-09 65.5 53 60.4
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 5.2e-09 64.7 53 60.4
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 2.0e-08 62.8 92 42.4
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 2.0e-08 62.8 65 52.3
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 5.7e-08 61.2 48 60.4
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 7.5e-08 60.8 107 35.5
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 9.8e-08 60.5 75 48.0
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 9.8e-08 60.5 75 48.0
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 4.8e-07 58.2 60 51.7
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 6.3e-07 57.8 49 57.1


User provided reference genes

Program Settings