Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 2.0e-110 402.5 219 100.0
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.5e-49 200.3 124 71.8
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.8e-45 186.8 221 48.9
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.8e-45 186.8 221 48.9
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 6.7e-45 184.9 176 58.0
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 8.8e-45 184.5 207 51.7
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 1.5e-44 183.7 217 57.1
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 2.2e-43 179.9 138 64.5
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 4.8e-43 178.7 229 54.1
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 1.4e-42 177.2 218 52.3
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 1.8e-42 176.8 181 53.6
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 4.1e-42 175.6 149 58.4
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.2e-41 174.1 176 58.0
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 2.0e-41 173.3 126 64.3
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 2.0e-41 173.3 146 61.0
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 3.4e-41 172.6 144 65.3
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 4.5e-41 172.2 137 61.3
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.0e-40 171.0 193 49.2
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 1.3e-40 170.6 163 55.8
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 3.8e-40 169.1 218 55.0
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 3.8e-40 169.1 220 50.9
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 5.0e-40 168.7 146 61.0
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 6.5e-40 168.3 160 56.9
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 8.5e-40 167.9 211 51.7
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 1.1e-39 167.5 126 67.5
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 2.5e-39 166.4 129 63.6
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.6e-38 163.7 227 49.8
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 2.1e-38 163.3 126 62.7
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 2.1e-38 163.3 132 59.8
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 6.1e-38 161.8 181 50.3
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 7.9e-38 161.4 184 57.1
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.0e-37 161.0 119 64.7
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 1.0e-37 161.0 227 49.3
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 1.0e-37 161.0 135 60.0
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.4e-37 160.6 160 56.9
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 3.9e-37 159.1 102 71.6
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 6.7e-37 158.3 128 58.6
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 6.7e-37 158.3 174 51.7
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.1e-36 157.5 227 44.9
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.1e-36 157.5 104 69.2
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 1.5e-36 157.1 125 64.0
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 3.3e-36 156.0 147 61.2
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 5.7e-36 155.2 217 48.4
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.3e-35 154.1 130 57.7
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.3e-35 154.1 130 57.7
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.7e-35 153.7 124 60.5
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 2.8e-35 152.9 122 60.7
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 2.8e-35 152.9 122 60.7
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 3.7e-35 152.5 141 57.4
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.7e-35 152.5 181 54.1
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 4.8e-35 152.1 104 71.2
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 6.3e-35 151.8 100 74.0
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 6.3e-35 151.8 112 64.3
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 8.2e-35 151.4 94 73.4
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.1e-34 151.0 147 54.4
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 1.1e-34 151.0 141 53.9
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.1e-34 151.0 147 54.4
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 1.4e-34 150.6 114 64.0
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.4e-34 150.6 98 70.4
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 1.4e-34 150.6 91 76.9
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 3.1e-34 149.4 113 63.7
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 3.1e-34 149.4 113 63.7
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 7.0e-34 148.3 118 61.0
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 7.0e-34 148.3 118 61.0
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 9.1e-34 147.9 104 68.3
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 1.2e-33 147.5 153 52.3
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 1.2e-33 147.5 124 58.9
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 2.0e-33 146.7 112 63.4
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 7.7e-33 144.8 127 59.1
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 1.0e-32 144.4 163 51.5
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 1.0e-32 144.4 159 54.1
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.7e-32 143.7 105 61.0
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 2.2e-32 143.3 227 42.3
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 3.8e-32 142.5 203 47.8
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 5.0e-32 142.1 205 49.3
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 6.5e-32 141.7 148 52.7
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.5e-31 140.6 127 59.1
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 1.9e-31 140.2 92 70.7
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 2.5e-31 139.8 148 53.4
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.5e-31 138.7 103 66.0
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 5.5e-31 138.7 174 48.9
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 7.2e-31 138.3 127 57.5
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 9.4e-31 137.9 125 56.8
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 1.2e-30 137.5 83 75.9
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.6e-30 137.1 91 70.3
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 3.6e-30 136.0 180 45.6
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 4.7e-30 135.6 127 57.5
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 8.0e-30 134.8 174 47.7
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.8e-29 133.7 254 38.6
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 1.8e-29 133.7 105 61.0
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 2.3e-29 133.3 89 68.5
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 8.8e-29 131.3 84 71.4
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.5e-28 130.6 221 44.3
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 1.1e-26 124.4 80 76.2
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 1.1e-26 124.4 92 64.1
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.4e-26 124.0 82 76.8
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 1.8e-26 123.6 80 75.0
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 2.4e-26 123.2 120 50.8
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 5.3e-26 122.1 172 41.9
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 5.3e-26 122.1 165 43.6
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 5.3e-26 122.1 134 47.0
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 2.7e-25 119.8 93 64.5
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 5.9e-25 118.6 93 63.4
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 3.8e-24 115.9 217 38.2
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 1.1e-23 114.4 80 70.0
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 5.5e-23 112.1 142 47.9
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 2.1e-22 110.2 130 46.9
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 2.7e-22 109.8 76 68.4
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 8.0e-22 108.2 187 42.8
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 2.3e-21 106.7 107 48.6
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 4.0e-21 105.9 98 59.2
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 5.2e-21 105.5 63 76.2
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 8.8e-21 104.8 80 66.2
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 3.4e-20 102.8 85 55.3
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 3.4e-20 102.8 228 36.8
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 5.7e-20 102.1 64 71.9
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 2.2e-19 100.1 82 59.8
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.8e-19 99.8 65 73.8
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 3.7e-19 99.4 62 75.8
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 8.3e-19 98.2 66 77.3
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 8.3e-19 98.2 67 70.1
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.1e-18 97.8 134 40.3
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 3.1e-18 96.3 93 52.7
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 3.1e-18 96.3 93 52.7
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 5.4e-18 95.5 98 49.0
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 2.0e-17 93.6 78 55.1
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.0e-17 93.6 61 75.4
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 4.5e-17 92.4 139 40.3
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 1.0e-16 91.3 92 47.8
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.9e-16 89.7 98 50.0
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 2.9e-16 89.7 82 56.1
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 5.0e-16 89.0 177 37.3
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 3.2e-15 86.3 115 45.2
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 4.7e-14 82.4 52 80.8
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 1.0e-13 81.3 47 83.0
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 3.0e-13 79.7 44 88.6
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 3.0e-13 79.7 74 56.8
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 4.0e-13 79.3 55 69.1
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 4.0e-13 79.3 158 37.3
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 5.2e-13 79.0 66 59.1
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 6.8e-13 78.6 69 59.4
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 6.8e-13 78.6 45 82.2
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 6.8e-13 78.6 148 38.5
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 1.2e-12 77.8 66 63.6
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 2.0e-12 77.0 79 44.3
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 2.6e-12 76.6 74 52.7
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 3.4e-12 76.3 164 34.8
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 4.4e-12 75.9 120 39.2
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 5.7e-12 75.5 48 79.2
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 7.5e-12 75.1 173 36.4
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 9.8e-12 74.7 68 61.8
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 9.8e-12 74.7 79 49.4
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 1.3e-11 74.3 96 41.7
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 1.7e-11 73.9 61 59.0
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 2.8e-11 73.2 44 81.8
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 3.7e-11 72.8 113 40.7
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 3.7e-11 72.8 43 83.7
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 4.9e-11 72.4 42 81.0
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 1.1e-10 71.2 135 38.5
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.1e-10 69.7 43 79.1
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 9.2e-10 68.2 37 89.2
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 2.0e-09 67.0 44 75.0
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 2.0e-09 67.0 61 52.5
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 2.7e-09 66.6 94 45.7
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 5.9e-09 65.5 50 70.0
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 1.3e-08 64.3 50 54.0
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 1.3e-08 64.3 74 48.6
ClCG05G004760 Citrullus lanatus HOM05D002369 ORTHO05D002435 3.3e-07 59.7 57 52.6
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 5.6e-07 58.9 37 78.4
Hund20657 Selenicereus undatus HOM05D002369 ORTHO05D002435 5.6e-07 58.9 61 45.9
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 9.5e-07 58.2 152 30.3
MELO3C006489.2 Cucumis melo HOM05D002369 ORTHO05D002435 1.2e-06 57.8 57 50.9
AagrBONN_evm.TU.Sc2ySwM_362.2112 Anthoceros agrestis HOM05D002369 ORTHO05D002435 1.6e-06 57.4 81 34.6
CsaV3_3G012780 Cucumis sativus L. HOM05D002369 ORTHO05D002435 1.6e-06 57.4 57 49.1
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.6e-06 57.4 97 34.0
ATR0626G331 Amborella trichopoda HOM05D002369 ORTHO05D002435 2.8e-06 56.6 71 40.8
CiPaw.01G193600 Carya illinoinensis HOM05D002369 ORTHO05D002435 3.6e-06 56.2 57 45.6
CAN.G749.11 Capsicum annuum HOM05D002369 ORTHO05D002435 6.1e-06 55.5 57 43.9
Thhalv10021823m.g Eutrema salsugineum HOM05D002369 ORTHO05D002435 8.0e-06 55.1 57 47.4
Lj5g0000230 Lotus japonicus HOM05D002369 ORTHO05D002435 8.0e-06 55.1 102 36.3


User provided reference genes

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