Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1800.4 877 100.0
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1357.8 862 74.9
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1347.8 863 74.0
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1342.0 872 74.2
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1335.9 871 73.9
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1335.9 869 73.0
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1331.2 868 72.1
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1328.9 866 73.1
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1322.4 870 73.6
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1321.2 866 72.9
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1320.4 868 71.7
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1317.8 866 72.5
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1317.4 878 71.6
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1315.1 868 71.8
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1312.4 868 71.7
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1312.0 874 71.3
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1311.2 878 71.0
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1310.0 878 71.0
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1309.3 869 71.7
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1308.1 879 70.4
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1307.7 864 71.6
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1306.2 876 70.9
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1304.3 871 72.3
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1303.5 865 71.4
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1302.0 869 71.1
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1301.2 871 71.9
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1297.3 864 72.1
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1294.6 872 72.2
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1294.6 863 71.1
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1294.3 868 70.6
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1294.3 873 69.4
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1293.5 878 71.4
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1293.1 869 70.7
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1284.6 871 70.4
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1284.2 867 71.0
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1273.8 865 70.4
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1273.8 865 72.0
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1270.4 872 69.3
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1270.0 881 68.3
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1267.7 876 69.1
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1264.2 873 68.6
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1262.7 865 69.9
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1261.1 868 68.8
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1260.0 865 69.5
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1259.6 830 73.0
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1259.6 878 68.9
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1257.3 866 68.4
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1256.1 877 68.6
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1256.1 864 68.4
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1255.4 869 69.0
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1254.6 868 69.9
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1254.2 865 68.9
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1253.0 867 68.7
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1252.3 865 68.8
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1249.6 887 67.5
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1247.3 867 68.5
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1247.3 865 68.0
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1245.0 870 67.8
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1244.6 867 68.4
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1244.6 872 68.5
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1244.2 865 68.6
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1243.8 866 68.2
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1242.6 866 69.6
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1242.3 866 68.9
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1238.8 875 68.2
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1238.0 877 67.3
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1237.2 877 66.5
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1236.9 871 69.7
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1231.9 868 67.4
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1231.9 880 67.3
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1229.5 866 67.2
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1228.4 866 67.2
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1227.6 866 68.1
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1227.2 874 68.3
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1226.8 866 67.1
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1222.6 874 67.0
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1222.6 884 66.3
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1222.2 867 66.8
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1221.8 868 67.4
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1221.8 877 66.8
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1221.1 872 67.0
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1221.1 868 67.4
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1218.4 866 68.2
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1216.8 866 66.6
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1213.0 876 66.0
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1212.6 864 66.7
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1211.1 867 66.3
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1208.4 865 67.4
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1163.7 871 64.8
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1109.4 856 62.9
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1097.0 747 70.5
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 0.0e+00 1090.5 859 62.2
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 0.0e+00 1078.5 691 72.6
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 8.6e-309 1063.5 864 59.4
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 1.9e-300 1035.8 647 74.7
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 3.3e-300 1035.0 877 60.2
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 4.4e-297 1024.6 692 69.9
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 3.5e-286 988.4 866 54.4
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 5.2e-282 974.5 873 54.4
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 1.5e-281 973.0 861 55.4
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 2.2e-280 969.1 869 53.4
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 4.1e-202 709.1 765 47.5
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.9e-162 577.4 388 70.6
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 1.9e-154 550.8 489 56.9
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 3.1e-149 533.5 460 56.7
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 2.5e-122 444.1 361 60.9
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 6.3e-102 376.3 307 63.2
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 3.0e-72 277.7 204 66.2
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 3.0e-67 261.2 168 72.6
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 8.9e-48 196.4 161 62.1
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 5.8e-47 193.7 174 56.3
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 9.2e-45 186.4 199 52.8
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 6.4e-38 163.7 216 44.4
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 1.5e-31 142.5 149 47.7
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.4e-29 135.2 122 54.1
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 5.4e-29 134.0 85 74.1
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 8.1e-25 120.2 87 67.8
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 2.6e-23 115.2 69 78.3
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 9.9e-23 113.2 90 61.1
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 4.6e-20 104.4 73 64.4
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 1.8e-19 102.4 106 51.9
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 8.4e-14 83.6 197 26.9
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.1e-13 83.2 328 24.1
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 4.2e-13 81.3 288 24.7
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.2e-12 79.7 318 23.6
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 4.6e-12 77.8 64 54.7
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 6.0e-12 77.4 297 23.9
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 3.3e-10 71.6 239 23.8
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 5.7e-10 70.9 94 40.4
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 9.6e-10 70.1 305 21.0
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.3e-09 69.7 298 23.8
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.6e-09 69.3 83 47.0
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.4e-08 65.5 177 29.9
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 4.1e-08 64.7 302 24.8
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 5.3e-08 64.3 307 23.1
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 2.0e-07 62.4 170 25.3
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 2.6e-07 62.0 281 24.9
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.0e-06 60.1 30 80.0
Cre03.g145447 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.2e-06 58.9 109 31.2
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 2.2e-06 58.9 296 23.0
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 2.9e-06 58.5 161 29.2
CBR_g36370 Chara braunii HOM05D008676 ORTHO05D010936 3.8e-06 58.2 73 42.5
CBR_g37950 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-06 57.8 162 27.8
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 8.5e-06 57.0 213 23.5


User provided reference genes

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