Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 9.7e-100 366.7 171 100.0
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 5.9e-81 304.3 156 86.5
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 5.9e-81 304.3 156 86.5
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 5.9e-81 304.3 172 80.2
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 1.3e-80 303.1 154 85.7
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 6.6e-80 300.8 160 81.9
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 8.6e-80 300.4 157 83.4
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 3.3e-79 298.5 156 84.6
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 5.5e-79 297.7 156 84.6
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 7.2e-79 297.4 169 77.5
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 1.2e-78 296.6 172 77.9
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.2e-78 296.6 154 85.1
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 3.6e-78 295.0 156 84.6
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 8.0e-78 293.9 156 82.1
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 1.0e-77 293.5 156 83.3
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.8e-77 292.7 157 85.4
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.8e-77 292.7 157 85.4
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 1.8e-77 292.7 155 83.9
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 3.0e-77 292.0 154 83.1
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 4.0e-77 291.6 154 84.4
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 4.0e-77 291.6 154 84.4
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 4.0e-77 291.6 157 82.8
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 8.9e-77 290.4 154 85.1
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 1.2e-76 290.0 155 80.0
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 1.2e-76 290.0 152 84.9
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 1.5e-76 289.7 154 83.1
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 1.5e-76 289.7 158 81.6
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 2.0e-76 289.3 154 80.5
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 5.7e-76 287.7 156 80.8
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 7.5e-76 287.3 156 80.8
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 1.7e-75 286.2 154 82.5
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.7e-75 286.2 155 83.2
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 2.2e-75 285.8 156 78.2
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 2.2e-75 285.8 153 83.7
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 2.8e-75 285.4 154 83.1
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 2.8e-75 285.4 154 80.5
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 2.8e-75 285.4 156 80.1
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 3.7e-75 285.0 154 81.2
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 3.7e-75 285.0 154 80.5
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 4.9e-75 284.6 154 81.8
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 4.9e-75 284.6 156 80.1
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 4.9e-75 284.6 156 80.1
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 4.9e-75 284.6 156 80.1
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 8.3e-75 283.9 154 79.2
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 2.4e-74 282.3 151 80.8
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.1e-74 281.6 154 81.2
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.1e-74 281.6 154 81.2
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 7.0e-74 280.8 150 82.0
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 7.0e-74 280.8 155 79.4
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 7.0e-74 280.8 153 83.0
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.2e-73 280.0 154 80.5
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 1.2e-73 280.0 149 82.6
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 3.5e-73 278.5 152 78.9
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.5e-73 278.5 154 80.5
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.5e-73 278.1 154 79.9
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 7.8e-73 277.3 154 77.9
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 7.8e-73 277.3 154 77.3
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 7.8e-73 277.3 154 77.3
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 1.0e-72 276.9 154 77.9
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 1.0e-72 276.9 154 77.9
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 1.0e-72 276.9 156 81.4
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 2.3e-72 275.8 150 80.0
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 2.3e-72 275.8 150 80.0
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 2.3e-72 275.8 154 77.3
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 2.3e-72 275.8 154 76.0
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 2.9e-72 275.4 147 80.3
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 8.6e-72 273.9 146 84.2
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 1.5e-71 273.1 154 76.0
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.9e-71 272.7 152 78.3
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 2.5e-71 272.3 154 78.6
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.3e-71 271.6 154 77.9
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 5.6e-71 271.2 149 79.9
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 7.3e-71 270.8 154 76.0
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 9.5e-71 270.4 155 74.8
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 9.5e-71 270.4 158 73.4
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 1.6e-70 269.6 157 75.8
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 2.1e-70 269.2 154 74.7
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 2.8e-70 268.9 154 75.3
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 4.7e-70 268.1 150 78.7
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.7e-70 268.1 154 75.3
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 6.1e-70 267.7 154 75.3
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 8.0e-70 267.3 154 75.3
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 1.0e-69 266.9 158 72.8
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 1.4e-69 266.5 154 74.7
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 1.4e-69 266.5 154 74.7
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 1.8e-69 266.2 150 77.3
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 2.3e-69 265.8 150 78.0
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 2.3e-69 265.8 150 78.0
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 2.3e-69 265.8 157 77.1
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 2.3e-69 265.8 154 76.0
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 2.3e-69 265.8 147 79.6
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 3.1e-69 265.4 150 77.3
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 8.9e-69 263.8 150 76.7
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 1.2e-68 263.5 150 77.3
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 1.5e-68 263.1 150 76.7
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 2.6e-68 262.3 147 77.6
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 3.4e-68 261.9 147 77.6
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 4.4e-68 261.5 171 72.5
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 7.5e-68 260.8 147 76.9
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 7.5e-68 260.8 147 76.9
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 3.7e-67 258.5 150 74.7
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.4e-66 256.5 156 74.4
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.7e-64 249.6 196 59.7
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.7e-64 249.6 196 59.7
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 1.5e-63 246.5 135 79.3
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.9e-63 246.1 207 59.4
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.3e-63 245.4 135 80.0
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 2.8e-62 242.3 136 78.7
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 6.2e-62 241.1 151 72.8
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 2.0e-60 236.1 154 67.5
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.0e-60 236.1 152 70.4
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.0e-60 236.1 152 70.4
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 2.6e-60 235.7 156 66.0
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 3.4e-60 235.3 153 66.7
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 5.8e-60 234.6 128 80.5
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 2.5e-55 219.2 153 65.4
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 2.3e-53 212.6 177 57.1
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 7.6e-52 207.6 117 76.1
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 4.1e-50 201.8 163 62.0
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 9.2e-50 200.7 155 56.1
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 7.8e-49 197.6 109 78.0
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 4.0e-45 185.3 154 55.2
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 9.9e-44 180.6 150 54.7
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.4e-43 177.6 91 82.4
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.7e-40 169.9 154 53.2
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.3e-38 163.7 145 46.2
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.3e-38 163.7 145 46.2
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 3.6e-38 162.2 174 45.4
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 1.1e-37 160.6 152 50.7
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 6.9e-37 157.9 111 70.3
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.2e-36 157.1 175 42.3
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 9.9e-36 154.1 142 47.2
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 6.4e-35 151.4 93 68.8
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 4.3e-31 138.7 65 87.7
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 2.1e-30 136.3 92 64.1
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 4.0e-29 132.1 150 39.3
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 6.9e-29 131.3 93 61.3
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.2e-28 130.6 149 38.3
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.9e-28 127.5 95 62.1
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.9e-27 125.9 59 89.8
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 1.4e-26 123.6 134 45.5
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.4e-23 111.3 118 50.0
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 6.9e-13 78.2 46 69.6
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 1.7e-11 73.6 44 75.0
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 6.1e-09 65.1 43 72.1


User provided reference genes

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