Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 1.1e-229 799.7 413 100.0
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 4.8e-161 571.6 357 81.2
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 8.2e-161 570.9 383 78.1
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 1.4e-160 570.1 375 78.7
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 3.8e-158 562.0 398 74.6
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 1.1e-157 560.5 380 76.6
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 3.2e-157 558.9 375 76.8
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.2e-156 557.0 368 77.4
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 7.9e-156 554.3 376 76.9
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 3.9e-155 552.0 357 78.4
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 5.1e-155 551.6 385 75.3
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.1e-154 550.4 381 75.9
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 1.5e-154 550.1 378 76.2
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.5e-154 550.1 391 74.7
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 2.6e-154 549.3 366 77.3
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 2.6e-154 549.3 358 78.5
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 4.4e-154 548.5 357 77.0
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 5.7e-154 548.1 347 79.5
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 5.7e-154 548.1 357 79.3
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 9.7e-154 547.4 347 79.3
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 9.7e-154 547.4 355 79.7
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 1.3e-153 547.0 369 77.5
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 1.7e-153 546.6 357 78.4
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 1.7e-153 546.6 360 75.6
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 1.7e-153 546.6 358 78.8
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 2.8e-153 545.8 390 74.4
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 3.7e-153 545.4 373 76.9
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 6.3e-153 544.7 410 70.5
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 1.1e-152 543.9 372 74.2
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 1.4e-152 543.5 376 75.8
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.4e-152 542.7 347 76.7
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 4.1e-152 542.0 355 79.4
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 7.0e-152 541.2 369 74.3
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 7.0e-152 541.2 368 75.8
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 1.2e-151 540.4 415 70.6
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.2e-151 540.4 376 75.8
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 1.2e-151 540.4 368 77.4
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 1.2e-151 540.4 368 77.4
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.6e-151 540.0 396 70.7
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 2.0e-151 539.7 363 75.5
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.0e-151 539.7 422 69.9
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 2.0e-151 539.7 345 80.3
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 2.0e-151 539.7 358 76.8
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.6e-151 539.3 347 76.7
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 4.5e-151 538.5 360 78.1
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 5.9e-151 538.1 361 77.3
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 1.0e-150 537.3 375 72.3
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 1.3e-150 537.0 368 73.4
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.2e-150 536.2 358 78.2
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 2.2e-150 536.2 369 73.7
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 2.9e-150 535.8 369 73.4
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 3.8e-150 535.4 414 67.6
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 3.8e-150 535.4 345 78.6
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.9e-149 533.1 334 78.1
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 4.2e-149 531.9 379 72.8
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 5.5e-149 531.6 374 75.1
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 5.5e-149 531.6 365 74.8
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 7.2e-149 531.2 385 71.2
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 1.2e-148 530.4 376 73.1
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 4.7e-148 528.5 358 75.1
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 6.1e-148 528.1 357 73.9
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 6.1e-148 528.1 361 75.6
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 6.1e-148 528.1 358 73.7
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 8.0e-148 527.7 381 70.3
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.0e-147 527.3 375 72.8
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.0e-147 527.3 396 69.2
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 1.0e-147 527.3 358 74.6
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 1.0e-147 527.3 348 77.3
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.4e-147 526.9 335 77.6
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 4.0e-147 525.4 367 73.3
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 4.0e-147 525.4 376 73.1
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 6.7e-147 524.6 361 72.3
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 4.4e-146 521.9 347 77.5
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 4.4e-146 521.9 379 73.4
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 5.7e-146 521.5 374 73.8
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 5.7e-146 521.5 346 75.1
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 5.7e-146 521.5 346 76.6
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 7.5e-146 521.2 347 77.2
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 9.7e-146 520.8 346 76.3
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 1.3e-145 520.4 355 75.5
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 2.2e-145 519.6 335 77.3
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 2.8e-145 519.2 356 75.8
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 3.7e-145 518.8 369 72.9
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 4.8e-145 518.5 361 72.6
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 4.8e-145 518.5 347 77.2
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 8.2e-145 517.7 376 71.5
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 8.2e-145 517.7 331 79.2
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 1.1e-144 517.3 376 72.6
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 1.1e-144 517.3 376 72.6
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 1.1e-144 517.3 346 76.0
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 1.4e-144 516.9 346 75.7
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 1.8e-144 516.5 361 74.0
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 5.3e-144 515.0 373 72.1
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 7.0e-144 514.6 370 73.5
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 7.0e-144 514.6 361 71.7
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 9.1e-144 514.2 318 78.0
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 9.1e-144 514.2 397 69.3
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 9.1e-144 514.2 355 72.7
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 1.2e-143 513.8 357 72.5
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 2.7e-143 512.7 367 73.0
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 3.5e-143 512.3 372 71.5
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 4.5e-143 511.9 379 72.8
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 1.3e-142 510.4 301 80.7
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 5.0e-142 508.4 369 73.4
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 6.5e-142 508.1 376 71.8
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 1.9e-141 506.5 357 71.7
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 4.2e-141 505.4 357 74.5
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 5.5e-141 505.0 376 71.5
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 7.2e-141 504.6 376 71.5
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 2.3e-139 499.6 292 81.8
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 3.0e-139 499.2 385 70.9
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 1.2e-138 497.3 337 72.1
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 5.7e-138 495.0 359 68.0
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 9.8e-138 494.2 326 76.7
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 9.8e-138 494.2 340 72.9
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 4.8e-137 491.9 358 71.8
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 4.8e-137 491.9 349 70.2
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 6.3e-137 491.5 338 76.0
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 8.3e-137 491.1 451 60.8
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 1.2e-135 487.3 322 75.8
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 2.7e-135 486.1 343 72.0
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 5.9e-135 485.0 377 65.3
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 1.7e-134 483.4 326 74.2
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 3.2e-133 479.2 296 78.4
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.5e-130 470.3 311 78.8
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 4.4e-130 468.8 393 65.9
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 9.8e-130 467.6 271 83.0
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 1.7e-129 466.8 359 69.9
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 4.9e-129 465.3 377 66.3
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 2.0e-127 459.9 354 62.7
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 5.9e-127 458.4 334 65.0
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 1.0e-126 457.6 357 67.8
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 2.1e-124 449.9 297 77.8
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 3.0e-123 446.0 316 74.4
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 7.5e-122 441.4 356 62.1
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 3.2e-120 436.0 277 75.5
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 4.1e-120 435.6 320 65.0
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 1.0e-118 431.0 357 65.0
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 1.7e-118 430.3 332 61.4
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 3.0e-118 429.5 311 71.1
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 3.3e-117 426.0 388 61.9
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 1.2e-116 424.1 266 77.4
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 3.4e-114 416.0 314 63.4
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 3.2e-112 409.5 320 61.2
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 7.0e-112 408.3 347 61.4
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.7e-105 387.1 372 61.6
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 4.9e-105 385.6 403 54.8
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 5.1e-102 375.6 241 76.8
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 1.1e-101 374.4 221 82.4
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 8.6e-94 348.2 366 51.6
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 2.4e-88 330.1 235 65.5
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 2.4e-75 287.0 234 65.8
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 7.6e-74 282.0 170 91.2
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 7.1e-64 248.8 150 79.3
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 1.3e-60 238.0 320 46.2
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 1.6e-55 221.1 182 59.9
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 1.0e-41 175.3 164 56.7
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 4.0e-30 136.7 286 33.2
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 6.7e-30 136.0 89 74.2
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 1.3e-28 131.7 100 71.0
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 3.8e-25 120.2 351 26.8
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 2.7e-23 114.0 306 28.1
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 3.0e-22 110.5 65 78.5
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.8e-19 101.3 243 35.0
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 3.2e-16 90.5 383 25.3
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 9.5e-16 89.0 91 64.8
Medtr1g008180 Medicago truncatula HOM05D003970 ORTHO05D004615 1.6e-15 88.2 59 71.2
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 1.4e-14 85.1 61 68.9
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 1.4e-14 85.1 61 68.9
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 5.2e-14 83.2 61 68.9
Cpa.g.sc28.102 Carica papaya HOM05D003970 ORTHO05D004615 8.8e-14 82.4 90 63.3
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 2.6e-13 80.9 84 54.8
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 2.8e-12 77.4 165 30.3
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 1.9e-08 64.7 33 84.8
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 7.3e-08 62.8 35 77.1
Zm00001eb043210 Zea mays HOM05D008270 ORTHO05D010684 2.1e-07 61.2 39 71.8
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 2.1e-07 61.2 39 71.8
Zm00001eb198340 Zea mays HOM05D003970 ORTHO05D004615 3.6e-07 60.5 39 69.2


User provided reference genes

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