Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g11300 Coffea canephora HOM05D005692 ORTHO05D006953 1.2e-54 216.1 100 100.0
Gorai.005G027900 Gossypium raimondii HOM05D005692 ORTHO05D006953 4.7e-46 187.6 95 86.3
Oeu039606.1 Olea europaea HOM05D005692 ORTHO05D006953 4.7e-46 187.6 98 84.7
vmacro06285 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 8.1e-46 186.8 94 85.1
vmacro23428 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 8.1e-46 186.8 94 85.1
MELO3C015461.2 Cucumis melo HOM05D005692 ORTHO05D006953 1.8e-45 185.7 97 85.6
Hund14283 Selenicereus undatus HOM05D005692 ORTHO05D006953 4.0e-45 184.5 94 86.2
COL.COLO4_18212 Corchorus olitorius HOM05D005692 ORTHO05D006953 5.2e-45 184.1 94 87.2
CsaV3_1G040340 Cucumis sativus L. HOM05D005692 ORTHO05D006953 6.8e-45 183.7 97 84.5
Dinv36757 Davidia involucrata HOM05D005692 ORTHO05D006953 1.2e-44 183.0 94 86.2
Gohir.D02G022500 Gossypium hirsutum HOM05D005692 ORTHO05D006953 1.2e-44 183.0 96 85.4
Potri.012G001800 Populus trichocarpa HOM05D005692 ORTHO05D006953 1.2e-44 183.0 92 87.0
Sabra12G0019500 Salix brachista HOM05D005692 ORTHO05D006953 1.2e-44 183.0 92 87.0
Sabra12G0019700 Salix brachista HOM05D005692 ORTHO05D006953 1.2e-44 183.0 92 87.0
Sc14g0000750 Simmondsia chinensis HOM05D005692 ORTHO05D006953 1.2e-44 183.0 93 87.1
Duzib151G0847 Durio zibethinus HOM05D005692 ORTHO05D006953 2.0e-44 182.2 95 85.3
Gohir.A02G019200 Gossypium hirsutum HOM05D005692 ORTHO05D006953 2.6e-44 181.8 94 85.1
Thecc.09G090700 Theobroma cacao HOM05D005692 ORTHO05D006953 2.6e-44 181.8 94 86.2
Sopen12g003750 Solanum pennellii HOM05D005692 ORTHO05D006953 3.4e-44 181.4 94 84.0
ClCG03G015670 Citrullus lanatus HOM05D005692 ORTHO05D006953 4.4e-44 181.0 97 83.5
Glyma.18G151700 Glycine max HOM05D005692 ORTHO05D006953 4.4e-44 181.0 95 85.3
Nitab4.5_0000540g0260 Nicotiana tabacum HOM05D005692 ORTHO05D006953 7.5e-44 180.3 94 83.0
Nitab4.5_0009931g0010 Nicotiana tabacum HOM05D005692 ORTHO05D006953 7.5e-44 180.3 94 83.0
Rhsim03G0233100 Rhododendron simsii HOM05D005692 ORTHO05D006953 7.5e-44 180.3 93 83.9
Solyc12g008810.2 Solanum lycopersicum HOM05D005692 ORTHO05D006953 7.5e-44 180.3 94 83.0
PGSC0003DMG400000281 Solanum tuberosum HOM05D005692 ORTHO05D006953 7.5e-44 180.3 94 83.0
Ah.10g037300 Amaranthus hybridus HOM05D005692 ORTHO05D006953 9.9e-44 179.9 93 83.9
Glyma.08G343600 Glycine max HOM05D005692 ORTHO05D006953 9.9e-44 179.9 95 84.2
Migut.J00600 Erythranthe guttata HOM05D005692 ORTHO05D006953 1.3e-43 179.5 97 81.4
Migut.J01065 Erythranthe guttata HOM05D005692 ORTHO05D006953 1.3e-43 179.5 97 81.4
AUR62039390 Chenopodium quinoa HOM05D005692 ORTHO05D006953 1.7e-43 179.1 93 84.9
Manes.03G032800 Manihot esculenta HOM05D005692 ORTHO05D006953 1.7e-43 179.1 94 84.0
CAN.G1241.20 Capsicum annuum HOM05D005692 ORTHO05D006953 2.9e-43 178.3 94 81.9
EL10Ac2g04637 Beta vulgaris HOM05D005692 ORTHO05D006953 3.7e-43 177.9 93 83.9
Nn8g38892 Nelumbo nucifera HOM05D005692 ORTHO05D006953 3.7e-43 177.9 96 83.3
CiPaw.03G217300 Carya illinoinensis HOM05D005692 ORTHO05D006953 4.9e-43 177.6 94 84.0
Ah.09g223860 Amaranthus hybridus HOM05D005692 ORTHO05D006953 8.3e-43 176.8 93 82.8
CSS0005546 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 8.3e-43 176.8 94 83.0
CSS0025569 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 8.3e-43 176.8 94 83.0
Psat6g162800 Pisum sativum HOM05D005692 ORTHO05D006953 8.3e-43 176.8 93 82.8
Cfa003097 Carpinus fangiana HOM05D005692 ORTHO05D006953 1.1e-42 176.4 91 84.6
DCAR_011984 Daucus carota HOM05D005692 ORTHO05D006953 1.1e-42 176.4 96 77.1
MD02G1077000 Malus domestica HOM05D005692 ORTHO05D006953 1.1e-42 176.4 93 83.9
Nn6g35447 Nelumbo nucifera HOM05D005692 ORTHO05D006953 1.4e-42 176.0 96 82.3
Peaxi162Scf00015g00716 Petunia axillaris HOM05D005692 ORTHO05D006953 1.9e-42 175.6 93 81.7
Prupe.7G211400 Prunus persica HOM05D005692 ORTHO05D006953 1.9e-42 175.6 95 80.0
Medtr7g051450 Medicago truncatula HOM05D005692 ORTHO05D006953 2.4e-42 175.3 92 84.8
Nitab4.5_0003152g0130 Nicotiana tabacum HOM05D005692 ORTHO05D006953 2.4e-42 175.3 94 81.9
Cpa.g.sc20.158 Carica papaya HOM05D005692 ORTHO05D006953 3.2e-42 174.9 94 83.0
Psat6g183720 Pisum sativum HOM05D005692 ORTHO05D006953 3.2e-42 174.9 93 81.7
Lalb_Chr03g0041061 Lupinus albus HOM05D005692 ORTHO05D006953 4.1e-42 174.5 95 80.0
Psat6g183640 Pisum sativum HOM05D005692 ORTHO05D006953 4.1e-42 174.5 93 81.7
FvH4_1g07240 Fragaria vesca HOM05D005692 ORTHO05D006953 5.4e-42 174.1 96 79.2
FAN26G0193 Fragaria x ananassa HOM05D005692 ORTHO05D006953 5.4e-42 174.1 96 79.2
Phvul.008G136000 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 5.4e-42 174.1 93 82.8
Ca_07409_v3 Cicer arietinum L. HOM05D005692 ORTHO05D006953 7.1e-42 173.7 93 81.7
RcHm_v2.0_Chr2g0093151 Rosa chinensis HOM05D005692 ORTHO05D006953 7.1e-42 173.7 96 78.1
arahy.Tifrunner.gnm1.ann1.JM0M9B Arachis hypogaea HOM05D005692 ORTHO05D006953 9.2e-42 173.3 93 81.7
arahy.Tifrunner.gnm1.ann1.VY1HWT Arachis hypogaea HOM05D005692 ORTHO05D006953 9.2e-42 173.3 93 81.7
Phvul.005G056600 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 9.2e-42 173.3 93 81.7
Sed0014309 Sechium edule HOM05D005692 ORTHO05D006953 9.2e-42 173.3 92 82.6
MD15G1205700 Malus domestica HOM05D005692 ORTHO05D006953 1.2e-41 172.9 93 82.8
Medtr7g021900 Medicago truncatula HOM05D005692 ORTHO05D006953 1.6e-41 172.6 92 83.7
Migut.H00760 Erythranthe guttata HOM05D005692 ORTHO05D006953 2.7e-41 171.8 97 78.4
PGR102G3100 Punica granatum HOM05D005692 ORTHO05D006953 4.6e-41 171.0 97 76.3
TWI34G0948 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 4.6e-41 171.0 99 77.8
Migut.H01159 Erythranthe guttata HOM05D005692 ORTHO05D006953 6.0e-41 170.6 97 77.3
FAN19G2784 Fragaria x ananassa HOM05D005692 ORTHO05D006953 6.0e-41 170.6 96 77.1
Lj1g0023726 Lotus japonicus HOM05D005692 ORTHO05D006953 6.0e-41 170.6 93 81.7
Phvul.008G136200 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 6.0e-41 170.6 93 81.7
SGA_v2.0_scaffold62G21600 Striga asiatica HOM05D005692 ORTHO05D006953 1.0e-40 169.9 98 75.5
TAR626G0225 Trochodendron aralioides HOM05D005692 ORTHO05D006953 1.0e-40 169.9 96 79.2
Ciclev10010392m.g Citrus clementina HOM05D005692 ORTHO05D006953 1.7e-40 169.1 94 76.6
HanXRQChr10g0319271 Helianthus annuus HOM05D005692 ORTHO05D006953 1.7e-40 169.1 97 75.3
Duzib187G1084 Durio zibethinus HOM05D005692 ORTHO05D006953 2.3e-40 168.7 94 79.8
Atru.BG.21.p Acer truncatum HOM05D005692 ORTHO05D006953 3.0e-40 168.3 89 83.1
ECA234G3968 Erigeron canadensis HOM05D005692 ORTHO05D006953 6.6e-40 167.2 97 73.2
MBI13_g44212_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 8.6e-40 166.8 94 79.8
MBI14_g41836_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 8.6e-40 166.8 94 79.8
THA.LOC104801884 Tarenaya hassleriana HOM05D005692 ORTHO05D006953 8.6e-40 166.8 91 81.3
Eucgr.C03889 Eucalyptus grandis HOM05D005692 ORTHO05D006953 1.1e-39 166.4 91 81.3
Psat6g183440 Pisum sativum HOM05D005692 ORTHO05D006953 1.5e-39 166.0 93 79.6
HPP92_009139 Vanilla planifolia HOM05D005692 ORTHO05D006953 1.5e-39 166.0 97 75.3
AUR62033506 Chenopodium quinoa HOM05D005692 ORTHO05D006953 1.9e-39 165.6 113 69.0
Atru.BG.266.p Acer truncatum HOM05D005692 ORTHO05D006953 2.5e-39 165.2 89 82.0
CANSAT78G0210 Cannabis sativa HOM05D005692 ORTHO05D006953 3.3e-39 164.9 98 69.4
VMungo1383G2743 Vigna mungo HOM05D005692 ORTHO05D006953 3.3e-39 164.9 115 68.7
FvH4_1g24820 Fragaria vesca HOM05D005692 ORTHO05D006953 4.3e-39 164.5 96 75.0
HanXRQChr12g0354791 Helianthus annuus HOM05D005692 ORTHO05D006953 4.3e-39 164.5 97 74.2
SGA_v2.0_scaffold852G53671 Striga asiatica HOM05D005692 ORTHO05D006953 4.3e-39 164.5 98 74.5
Duzib187G0878 Durio zibethinus HOM05D005692 ORTHO05D006953 9.5e-39 163.3 94 79.8
FAN23G0510 Fragaria x ananassa HOM05D005692 ORTHO05D006953 9.5e-39 163.3 90 78.9
FAN26G1568 Fragaria x ananassa HOM05D005692 ORTHO05D006953 9.5e-39 163.3 90 78.9
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 1.2e-38 162.9 89 80.9
FAN19G0937 Fragaria x ananassa HOM05D005692 ORTHO05D006953 1.6e-38 162.5 95 75.8
Lsat_1_v5_gn_5_145440 Lactuca sativa HOM05D005692 ORTHO05D006953 2.1e-38 162.2 97 71.1
Peaxi162Scf00354g00223 Petunia axillaris HOM05D005692 ORTHO05D006953 6.2e-38 160.6 97 75.3
PSO210G0626 Papaver somniferum HOM05D005692 ORTHO05D006953 2.4e-37 158.7 94 72.3
PSO210G2337 Papaver somniferum HOM05D005692 ORTHO05D006953 2.4e-37 158.7 94 72.3
SGA_v2.0_scaffold33G13431 Striga asiatica HOM05D005692 ORTHO05D006953 2.4e-37 158.7 102 70.6
unitig_748.g8121 Utricularia gibba HOM05D005692 ORTHO05D006953 3.1e-37 158.3 98 71.4
TWI32G0831 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 4.0e-37 157.9 91 79.1
GSVIVG01015215001 Vitis vinifera HOM05D005692 ORTHO05D006953 6.8e-37 157.1 97 73.2
Aqoxy4G03142 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 8.9e-37 156.8 96 74.0
Nitab4.5_0003079g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 4.4e-36 154.5 82 81.7
Os05g0540200 Oryza sativa ssp. japonica HOM05D005692 ORTHO05D006953 5.8e-36 154.1 93 74.2
ATR0602G199 Amborella trichopoda HOM05D005692 ORTHO05D006953 2.9e-35 151.8 98 71.4
Nitab4.5_0000095g0140 Nicotiana tabacum HOM05D005692 ORTHO05D006953 2.9e-35 151.8 106 67.0
SHI00379 Sapria himalayana HOM05D005692 ORTHO05D006953 3.2e-34 148.3 78 80.8
Aa31LG2G20910 Aethionema arabicum HOM05D005692 ORTHO05D006953 4.2e-34 147.9 91 68.1
CARHR237500 Cardamine hirsuta HOM05D005692 ORTHO05D006953 7.1e-34 147.1 91 70.3
BcaC09g51744 Brassica carinata HOM05D005692 ORTHO05D006953 9.2e-34 146.7 91 70.3
Thhalv10026646m.g Eutrema salsugineum HOM05D005692 ORTHO05D006953 1.2e-33 146.4 91 70.3
AL7G22650 Arabidopsis lyrata HOM05D005692 ORTHO05D006953 1.6e-33 146.0 89 70.8
AT4G29660 Arabidopsis thaliana HOM05D005692 ORTHO05D006953 1.6e-33 146.0 89 70.8
Carub.0007s1086 Capsella rubella HOM05D005692 ORTHO05D006953 1.6e-33 146.0 89 70.8
BcaC09g52211 Brassica carinata HOM05D005692 ORTHO05D006953 4.6e-33 144.4 89 69.7
A01p08470 Brassica napus HOM05D005692 ORTHO05D006953 4.6e-33 144.4 89 69.7
C01p09830 Brassica napus HOM05D005692 ORTHO05D006953 4.6e-33 144.4 89 69.7
BolC1t00945H Brassica oleracea HOM05D005692 ORTHO05D006953 4.6e-33 144.4 89 69.7
BraA01t00794Z Brassica rapa HOM05D005692 ORTHO05D006953 4.6e-33 144.4 89 69.7
Sp7g27450 Schrenkiella parvula HOM05D005692 ORTHO05D006953 7.8e-33 143.7 89 70.8
Sp3g29900 Schrenkiella parvula HOM05D005692 ORTHO05D006953 1.0e-32 143.3 89 71.9
Nitab4.5_0008958g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 2.8e-30 135.2 78 78.2
Nitab4.5_0004795g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 6.2e-30 134.0 80 77.5
Aqoxy1G00378 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 6.9e-29 130.6 89 66.3
Peaxi162Scf00498g00124 Petunia axillaris HOM05D005692 ORTHO05D006953 1.2e-28 129.8 69 81.2
CDE06G0459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 6.4e-27 124.0 74 71.6
SHI21206 Sapria himalayana HOM05D005692 ORTHO05D006953 1.2e-25 119.8 63 77.8
TPR.G24304 Trifolium pratense HOM05D005692 ORTHO05D006953 1.3e-24 116.3 209 34.4
CDE06G1459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 3.3e-23 111.7 62 75.8
Psat0s10921g0080 Pisum sativum HOM05D005692 ORTHO05D006953 2.4e-21 105.5 61 78.7
SGA_v2.0_scaffold33G13433 Striga asiatica HOM05D000524 ORTHO05D000381 9.0e-21 103.6 61 78.7
FAN19G3189 Fragaria x ananassa HOM05D005692 ORTHO05D006953 2.2e-19 99.0 74 60.8
CBR_g36562 Chara braunii HOM05D005692 ORTHO05D006953 7.4e-15 84.0 78 47.4
Mapoly0063s0096 Marchantia polymorpha HOM05D005692 ORTHO05D006953 7.4e-15 84.0 68 51.5
Zm00001eb294300 Zea mays HOM05D005692 ORTHO05D006953 7.6e-12 73.9 61 55.7
Haze_25902 Corylus avellana HOM05D001256 ORTHO05D001141 2.9e-11 72.0 36 75.0
Pp3c13_20310 Physcomitrium patens HOM05D005692 ORTHO05D006953 6.2e-06 54.3 57 43.9


User provided reference genes

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