Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g11240 Coffea canephora HOM05D007800 ORTHO05D009881 1.6e-288 995.3 498 100.0
CSS0047448 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 5.1e-165 585.1 501 59.1
CSS0040388 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 5.6e-164 581.6 501 59.5
QL02p062921 Quercus lobata HOM05D007800 ORTHO05D009881 4.0e-162 575.5 499 57.9
Hma1.2p1_0800F.1_g220040 Hydrangea macrophylla HOM05D007800 ORTHO05D009881 4.2e-159 565.5 508 59.4
Nitab4.5_0010434g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 4.3e-156 555.4 501 57.1
Dinv36755 Davidia involucrata HOM05D007800 ORTHO05D009881 9.6e-156 554.3 497 57.5
PGSC0003DMG400002319 Solanum tuberosum HOM05D007800 ORTHO05D009881 2.8e-155 552.7 503 56.3
Nitab4.5_0010222g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 6.2e-155 551.6 502 56.6
Oeu018234.1 Olea europaea HOM05D007800 ORTHO05D009881 9.0e-154 547.7 487 56.7
GSVIVG01015219001 Vitis vinifera HOM05D007800 ORTHO05D009881 2.0e-153 546.6 499 57.1
Cfa003104 Carpinus fangiana HOM05D007800 ORTHO05D009881 1.1e-151 540.8 501 54.9
Actinidia03799 Actinidia chinensis HOM05D007800 ORTHO05D009881 2.7e-150 536.2 498 55.4
Haze_25896 Corylus avellana HOM05D007800 ORTHO05D009881 3.0e-149 532.7 501 54.7
MSTRG.19524 Avicennia marina HOM05D007800 ORTHO05D009881 6.6e-149 531.6 508 57.5
TWI32G0405 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 8.1e-147 524.6 505 53.7
Prupe.7G211900 Prunus persica HOM05D007800 ORTHO05D009881 1.4e-146 523.9 502 54.4
MD02G1076500 Malus domestica HOM05D007800 ORTHO05D009881 4.0e-146 522.3 502 53.8
Sopen07g014250 Solanum pennellii HOM05D007800 ORTHO05D009881 2.0e-145 520.0 503 54.7
Cpa.g.sc93.18 Carica papaya HOM05D007800 ORTHO05D009881 4.5e-145 518.8 509 53.4
Solyc07g026640.3 Solanum lycopersicum HOM05D007800 ORTHO05D009881 3.5e-142 509.2 498 53.4
Ciclev10010231m.g Citrus clementina HOM05D007800 ORTHO05D009881 5.1e-141 505.4 508 53.3
Duzib150G1500 Durio zibethinus HOM05D007800 ORTHO05D009881 2.5e-140 503.1 509 53.0
Migut.K00591 Erythranthe guttata HOM05D007800 ORTHO05D009881 7.4e-140 501.5 505 54.5
CANSAT56G2700 Cannabis sativa HOM05D007800 ORTHO05D009881 3.7e-139 499.2 504 52.2
Potri.006G151500 Populus trichocarpa HOM05D007800 ORTHO05D009881 3.7e-139 499.2 502 53.4
FvH4_1g07200 Fragaria vesca HOM05D007800 ORTHO05D009881 4.8e-139 498.8 503 52.1
HanXRQChr03g0060771 Helianthus annuus HOM05D007800 ORTHO05D009881 6.2e-139 498.4 501 52.1
RcHm_v2.0_Chr2g0093101 Rosa chinensis HOM05D007800 ORTHO05D009881 8.1e-139 498.0 501 51.9
Peaxi162Scf00141g00327 Petunia axillaris HOM05D007800 ORTHO05D009881 5.3e-138 495.4 504 53.8
TAR626G0221 Trochodendron aralioides HOM05D007800 ORTHO05D009881 6.9e-138 495.0 510 52.5
Eucgr.C00905 Eucalyptus grandis HOM05D007800 ORTHO05D009881 3.2e-135 486.1 505 51.5
FAN19G0334 Fragaria x ananassa HOM05D007800 ORTHO05D009881 3.2e-135 486.1 488 52.0
FAN23G2336 Fragaria x ananassa HOM05D007800 ORTHO05D009881 4.2e-135 485.7 488 52.0
Lsat_1_v5_gn_7_37520 Lactuca sativa HOM05D007800 ORTHO05D009881 5.5e-135 485.3 505 51.5
Gorai.010G081900 Gossypium raimondii HOM05D007800 ORTHO05D009881 9.3e-135 484.6 510 51.6
CiPaw.03G217600 Carya illinoinensis HOM05D007800 ORTHO05D009881 1.2e-134 484.2 501 52.1
SalBow1G2412 Salvia bowleyana HOM05D007800 ORTHO05D009881 7.9e-134 481.5 449 56.1
Sabra06G0120000 Salix brachista HOM05D007800 ORTHO05D009881 1.0e-133 481.1 501 52.7
SGA_v2.0_scaffold23G09996 Striga asiatica HOM05D007800 ORTHO05D009881 2.3e-133 479.9 504 51.2
Gohir.A06G071700 Gossypium hirsutum HOM05D007800 ORTHO05D009881 2.5e-132 476.5 510 50.8
PGR142G2964 Punica granatum HOM05D007800 ORTHO05D009881 3.8e-128 462.6 507 49.7
Aqoxy7G01245 Aquilegia oxysepala HOM05D007800 ORTHO05D009881 8.4e-128 461.5 523 49.7
THA.LOC104801881 Tarenaya hassleriana HOM05D007800 ORTHO05D009881 3.7e-123 446.0 504 48.0
COL.COLO4_18216 Corchorus olitorius HOM05D007800 ORTHO05D009881 5.3e-122 442.2 439 54.2
Manes.16G103100 Manihot esculenta HOM05D007800 ORTHO05D009881 5.3e-122 442.2 420 54.5
ECA240G1450 Erigeron canadensis HOM05D007800 ORTHO05D009881 2.0e-121 440.3 519 49.3
AT4G29560 Arabidopsis thaliana HOM05D007800 ORTHO05D009881 2.2e-120 436.8 511 47.4
BcaB03g12612 Brassica carinata HOM05D007800 ORTHO05D009881 2.2e-120 436.8 508 46.9
PSO832G3388 Papaver somniferum HOM05D007800 ORTHO05D009881 2.9e-120 436.4 507 49.9
Thhalv10027131m.g Eutrema salsugineum HOM05D007800 ORTHO05D009881 1.1e-116 424.5 518 45.6
AL7G22820 Arabidopsis lyrata HOM05D007800 ORTHO05D009881 1.3e-115 421.0 511 45.6
A08p19590 Brassica napus HOM05D007800 ORTHO05D009881 2.8e-115 419.9 510 43.9
BolC3t21231H Brassica oleracea HOM05D007800 ORTHO05D009881 1.8e-114 417.2 509 44.0
CARHR237380 Cardamine hirsuta HOM05D007800 ORTHO05D009881 1.8e-114 417.2 518 46.5
C03p89220 Brassica napus HOM05D007800 ORTHO05D009881 4.1e-114 416.0 510 43.9
BcaC01g01177 Brassica carinata HOM05D007800 ORTHO05D009881 9.1e-114 414.8 510 43.9
Carub.0007s1100 Capsella rubella HOM05D007800 ORTHO05D009881 1.2e-113 414.5 506 46.0
TWI32G0422 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 1.5e-113 414.1 419 50.6
Atru.BG.11.p Acer truncatum HOM05D007800 ORTHO05D009881 5.9e-113 412.1 422 51.2
FAN26G1329 Fragaria x ananassa HOM05D007800 ORTHO05D009881 7.7e-113 411.8 415 52.5
FAN26G3078 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.0e-112 411.4 421 52.0
BraA08t33918Z Brassica rapa HOM05D007800 ORTHO05D009881 8.5e-112 408.3 513 42.9
DCAR_010680 Daucus carota HOM05D007800 ORTHO05D009881 1.6e-110 404.1 412 51.2
Nn8g38899 Nelumbo nucifera HOM05D007800 ORTHO05D009881 4.7e-110 402.5 415 52.5
Thecc.09G091400 Theobroma cacao HOM05D007800 ORTHO05D009881 7.9e-110 401.7 419 51.3
Sc08g0008380 Simmondsia chinensis HOM05D007800 ORTHO05D009881 3.9e-109 399.4 507 45.6
MBI01_g01250_MAGBIO Magnolia biondii HOM05D007800 ORTHO05D009881 1.0e-104 384.8 511 42.3
PSO063G3968 Papaver somniferum HOM05D007800 ORTHO05D009881 2.1e-94 350.5 420 48.3
HPP92_005239 Vanilla planifolia HOM05D007800 ORTHO05D009881 2.7e-86 323.6 511 40.1
FAN28G0657 Fragaria x ananassa HOM05D007800 ORTHO05D009881 5.2e-85 319.3 312 52.6
Lj7P673T61 Lonicera japonica HOM05D007800 ORTHO05D009881 2.0e-84 317.4 244 64.3
Gohir.D06G070300 Gossypium hirsutum HOM05D007800 ORTHO05D009881 1.1e-82 311.6 364 48.6
MD15G1205200 Malus domestica HOM05D007800 ORTHO05D009881 2.5e-79 300.4 461 39.3
ATR0782G161 Amborella trichopoda HOM05D007800 ORTHO05D009881 2.5e-71 273.9 553 34.5
Os06g0573800 Oryza sativa ssp. japonica HOM05D007800 ORTHO05D009881 1.2e-65 255.0 498 34.1
SEGI_31551 Sequoiadendron giganteum HOM05D007800 ORTHO05D009881 3.5e-65 253.4 565 31.5
Zm00001eb385220 Zea mays HOM05D007800 ORTHO05D009881 1.2e-62 245.0 526 35.0
FAN28G2802 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.7e-40 171.4 165 53.3
Mapoly0036s0155 Marchantia polymorpha HOM05D007800 ORTHO05D009881 9.0e-37 159.1 480 28.3
Dinv42307 Davidia involucrata HOM05D007800 ORTHO05D009881 1.6e-33 148.3 117 63.2
Pp3c4_16520 Physcomitrium patens HOM05D007800 ORTHO05D009881 2.6e-28 131.0 440 26.6
AagrBONN_evm.TU.Sc2ySwM_344.183 Anthoceros agrestis HOM05D007800 ORTHO05D009881 9.3e-18 95.9 437 27.5
CDE05G3378 Ceratophyllum demersum HOM05D007800 ORTHO05D009881 3.1e-13 80.9 252 30.6


User provided reference genes

Program Settings