Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 1.1e-290 1002.7 539 100.0
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 1.6e-135 487.3 551 50.1
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.1e-128 464.5 546 48.0
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.8e-128 463.8 524 47.3
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 9.1e-128 461.5 535 46.4
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 5.9e-127 458.8 528 49.2
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.7e-124 449.1 542 47.2
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.7e-124 449.1 542 47.2
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 4.0e-123 446.0 533 43.9
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.2e-119 434.5 527 45.9
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 4.5e-119 432.6 536 47.2
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 5.0e-118 429.1 538 43.7
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 8.6e-118 428.3 524 45.4
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 3.3e-117 426.4 530 43.2
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 4.7e-116 422.5 524 43.9
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 2.4e-112 410.2 535 43.0
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 1.1e-109 401.4 528 41.7
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 2.1e-108 397.1 535 41.9
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 8.0e-108 395.2 524 41.6
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 5.2e-107 392.5 522 43.3
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 7.5e-106 388.7 534 42.7
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.9e-105 386.7 528 42.0
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 1.9e-104 384.0 503 43.9
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 2.1e-103 380.6 537 42.3
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 3.5e-103 379.8 522 39.1
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 7.8e-103 378.6 539 38.8
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 1.3e-102 377.9 523 40.9
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.7e-102 377.5 402 47.8
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 9.5e-101 371.7 420 46.4
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 2.0e-98 364.0 474 43.7
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.6e-98 363.6 540 40.0
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 9.9e-98 361.7 529 39.9
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 3.7e-97 359.8 536 41.4
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 1.2e-95 354.8 523 39.0
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-94 351.3 529 36.9
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.1e-94 349.4 566 38.2
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 6.6e-94 349.0 473 42.9
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 6.2e-92 342.4 540 38.9
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 6.8e-91 339.0 541 39.7
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 8.4e-89 332.0 479 39.9
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.1e-88 331.6 542 38.7
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.4e-88 331.3 475 40.4
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.9e-88 330.9 528 36.4
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 3.2e-88 330.1 537 38.7
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 4.2e-88 329.7 465 40.4
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 7.1e-88 328.9 537 38.7
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.3e-86 324.7 498 38.4
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 2.8e-84 317.0 529 36.3
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.8e-84 317.0 529 36.3
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 2.8e-84 317.0 524 36.6
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.8e-83 314.3 522 35.4
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 2.4e-83 313.9 523 36.1
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 4.0e-83 313.2 522 35.6
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 1.7e-81 307.8 523 36.3
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 4.9e-81 306.2 413 43.6
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.4e-80 303.9 473 38.1
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 3.0e-78 297.0 521 35.9
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 3.9e-78 296.6 519 35.6
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 6.6e-78 295.8 515 36.1
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 9.6e-77 292.0 525 35.4
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 2.8e-76 290.4 524 37.0
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 3.6e-76 290.0 525 35.8
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 6.2e-76 289.3 527 36.1
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 3.1e-75 287.0 518 34.6
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.2e-74 285.0 521 35.7
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.4e-74 283.5 475 36.8
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.3e-73 281.6 504 36.5
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 2.2e-73 280.8 530 34.9
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 8.4e-73 278.9 521 35.5
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.9e-72 277.7 503 35.6
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 4.2e-72 276.6 512 35.7
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 5.4e-72 276.2 480 34.8
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 2.7e-71 273.9 485 33.8
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 3.5e-71 273.5 539 34.1
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 6.7e-70 269.2 470 36.6
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 2.5e-69 267.3 511 35.4
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 1.6e-68 264.6 523 33.5
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 4.5e-66 256.5 491 33.6
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 7.6e-66 255.8 525 33.9
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.9e-65 253.8 527 31.7
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 1.9e-64 251.1 527 33.2
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 1.2e-63 248.4 291 49.5
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 2.1e-63 247.7 529 32.5
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 4.6e-63 246.5 350 39.1
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 6.0e-63 246.1 516 33.7
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 5.1e-62 243.0 492 31.3
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 4.3e-61 240.0 486 33.5
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 4.3e-61 240.0 482 32.0
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 4.3e-61 240.0 524 33.8
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 7.4e-61 239.2 404 36.4
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.6e-60 238.0 415 34.7
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 8.2e-60 235.7 405 35.6
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 1.8e-59 234.6 496 31.5
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.4e-59 234.2 398 35.7
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.3e-59 233.0 541 31.1
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 5.3e-59 233.0 507 32.3
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 5.3e-59 233.0 398 35.4
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.2e-58 231.9 378 38.1
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 1.2e-58 231.9 372 36.6
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.5e-58 231.5 496 30.8
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 2.0e-58 231.1 471 30.6
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 2.6e-58 230.7 526 31.2
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.0e-57 226.5 496 30.4
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 1.1e-56 225.3 461 31.0
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 1.4e-56 224.9 279 42.7
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 5.5e-56 223.0 269 43.5
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 5.5e-56 223.0 360 36.9
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 7.1e-56 222.6 269 43.5
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 7.1e-56 222.6 247 51.0
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.6e-55 221.5 467 31.3
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 2.7e-55 220.7 431 32.5
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.0e-54 218.8 515 30.5
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.8e-54 218.0 522 29.9
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 6.7e-54 216.1 558 29.9
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.1e-53 215.3 508 29.7
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.1e-53 215.3 508 29.7
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.1e-53 215.3 269 45.4
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 1.5e-53 214.9 505 30.1
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 5.7e-53 213.0 436 31.4
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.3e-52 211.8 270 42.6
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 2.2e-52 211.1 469 32.0
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 2.2e-52 211.1 375 33.1
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 3.7e-52 210.3 473 31.1
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.4e-51 207.6 253 46.6
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 4.1e-51 206.8 505 29.3
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 6.9e-51 206.1 494 30.2
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 4.5e-50 203.4 387 34.1
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 1.0e-49 202.2 271 42.4
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.7e-49 201.4 528 28.2
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 5.0e-49 199.9 393 32.6
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 6.5e-49 199.5 407 34.4
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 1.4e-46 191.8 417 34.8
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 1.8e-46 191.4 401 30.4
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 3.3e-45 187.2 479 29.0
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 6.3e-44 183.0 363 31.7
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.1e-43 180.6 239 43.1
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 5.3e-43 179.9 403 30.3
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 5.3e-43 179.9 374 31.6
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 2.0e-42 177.9 496 28.0
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 2.6e-42 177.6 402 30.6
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 3.4e-42 177.2 500 28.4
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 8.5e-41 172.6 515 26.8
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 2.5e-40 171.0 519 27.2
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 3.2e-40 170.6 265 40.0
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 1.0e-38 165.6 264 37.1
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 1.8e-38 164.9 518 27.4
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 8.8e-38 162.5 275 35.3
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 1.5e-37 161.8 377 31.0
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 2.6e-37 161.0 384 30.5
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 7.4e-37 159.5 377 30.2
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 2.8e-36 157.5 379 29.8
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 3.7e-36 157.1 295 33.6
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 6.3e-36 156.4 258 39.1
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 1.8e-35 154.8 387 29.7
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 3.7e-28 130.6 251 35.5
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 8.2e-28 129.4 254 30.7
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 9.1e-27 125.9 269 32.7
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 7.7e-26 122.9 87 64.4
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.9e-24 118.2 284 28.9
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 3.6e-23 114.0 268 31.7
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 1.8e-22 111.7 130 45.4
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 2.6e-21 107.8 158 38.0
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 3.4e-21 107.5 483 25.7
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 7.5e-21 106.3 256 30.1
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 2.2e-20 104.8 161 36.6
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 7.0e-19 99.8 161 36.0
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 7.7e-18 96.3 256 32.4
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 1.3e-17 95.5 151 37.7
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.9e-16 91.7 237 30.4
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.7e-15 87.8 147 33.3
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.0e-10 71.6 196 29.1
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 5.9e-10 70.1 280 24.3
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 1.5e-08 65.5 383 24.8


User provided reference genes

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