Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g10970 Coffea canephora HOM05D005294 ORTHO05D038989 1.5e-33 145.6 73 100.0
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 1.6e-11 72.4 40 80.0
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 2.8e-11 71.6 42 73.8
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 2.8e-11 71.6 40 87.5
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 4.7e-11 70.9 40 82.5
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 4.7e-11 70.9 40 82.5
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 4.7e-11 70.9 40 80.0
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 6.1e-11 70.5 39 79.5
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 6.1e-11 70.5 40 87.5
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 6.1e-11 70.5 40 77.5
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 6.1e-11 70.5 47 72.3
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 5.2e-10 67.4 40 77.5
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 5.2e-10 67.4 40 82.5
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 8.9e-10 66.6 40 75.0
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 1.5e-09 65.9 40 75.0
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 2.0e-09 65.5 40 75.0
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 3.4e-09 64.7 41 75.6
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 3.4e-09 64.7 42 73.8
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 5.8e-09 63.9 40 70.0
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 5.8e-09 63.9 48 62.5
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 7.5e-09 63.5 40 70.0
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 1.7e-08 62.4 40 70.0
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 1.7e-08 62.4 40 67.5
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 2.2e-08 62.0 40 75.0
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 4.9e-08 60.8 41 73.2
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 8.3e-08 60.1 40 72.5
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 8.3e-08 60.1 40 70.0
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 8.3e-08 60.1 40 70.0
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 8.3e-08 60.1 40 70.0
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 8.3e-08 60.1 40 70.0
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 8.3e-08 60.1 41 70.7
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 8.3e-08 60.1 41 70.7
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 8.3e-08 60.1 41 70.7
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 8.3e-08 60.1 41 75.6
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 1.1e-07 59.7 40 70.0
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 1.1e-07 59.7 40 60.0
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 1.9e-07 58.9 40 67.5
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 2.4e-07 58.5 40 65.0
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 3.2e-07 58.2 40 67.5
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 3.2e-07 58.2 41 73.2
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 3.2e-07 58.2 40 72.5
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 3.2e-07 58.2 40 67.5
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 3.2e-07 58.2 40 65.0
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 4.1e-07 57.8 40 67.5
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 4.1e-07 57.8 40 67.5
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 5.4e-07 57.4 40 67.5
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 5.4e-07 57.4 42 64.3
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 7.0e-07 57.0 40 67.5
EL10Ac7g17723 Beta vulgaris HOM05D005294 ORTHO05D038989 7.0e-07 57.0 39 69.2
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 7.0e-07 57.0 40 65.0
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 7.0e-07 57.0 55 58.2
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 7.0e-07 57.0 40 67.5
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 9.2e-07 56.6 40 60.0
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 9.2e-07 56.6 40 72.5
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 9.2e-07 56.6 40 72.5
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 1.2e-06 56.2 40 67.5
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 1.2e-06 56.2 40 65.0
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 1.6e-06 55.8 40 65.0
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 2.0e-06 55.5 40 57.5
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 2.0e-06 55.5 40 62.5
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 2.0e-06 55.5 40 65.0
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 2.7e-06 55.1 40 60.0
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 3.5e-06 54.7 40 65.0
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 3.5e-06 54.7 40 67.5
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 4.6e-06 54.3 35 65.7
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 6.0e-06 53.9 40 67.5
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 7.8e-06 53.5 40 65.0
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 7.8e-06 53.5 40 65.0
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 7.8e-06 53.5 40 65.0
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 7.8e-06 53.5 40 62.5


User provided reference genes

Program Settings