Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g10920 Coffea canephora HOM05D006529 ORTHO05D008380 1.8e-110 402.5 195 100.0
Nitab4.5_0004011g0030 Nicotiana tabacum HOM05D006529 ORTHO05D008380 4.8e-87 324.7 198 76.3
CAN.G142.8 Capsicum annuum HOM05D006529 ORTHO05D008380 8.5e-84 313.9 194 74.7
MSTRG.10586 Avicennia marina HOM05D006529 ORTHO05D008380 9.8e-80 300.4 195 74.9
Cfa003138 Carpinus fangiana HOM05D006529 ORTHO05D008380 2.2e-79 299.3 193 72.5
Migut.K00572 Erythranthe guttata HOM05D006529 ORTHO05D008380 1.6e-77 293.1 196 74.5
Oeu052123.2 Olea europaea HOM05D006529 ORTHO05D008380 2.0e-77 292.7 219 65.8
Lj7C671T1 Lonicera japonica HOM05D006529 ORTHO05D008380 1.7e-76 289.7 210 67.6
TAR624G0297 Trochodendron aralioides HOM05D006529 ORTHO05D008380 5.0e-76 288.1 199 70.9
CSS0016193 Camellia sinensis var. sinensis HOM05D006529 ORTHO05D008380 1.5e-75 286.6 198 70.2
Dinv42286 Davidia involucrata HOM05D006529 ORTHO05D008380 1.9e-75 286.2 206 68.9
ECA240G3812 Erigeron canadensis HOM05D006529 ORTHO05D008380 2.5e-75 285.8 202 68.3
vmacro06269 Vaccinium macrocarpon HOM05D006529 ORTHO05D008380 1.6e-74 283.1 201 69.7
Duzib150G0994 Durio zibethinus HOM05D006529 ORTHO05D008380 2.1e-74 282.7 195 70.3
Atru.chr7.1518 Acer truncatum HOM05D006529 ORTHO05D008380 2.8e-74 282.3 197 69.5
CiPaw.04G153200 Carya illinoinensis HOM05D006529 ORTHO05D008380 4.7e-74 281.6 193 69.4
Manes.16G105400 Manihot esculenta HOM05D006529 ORTHO05D008380 1.8e-73 279.6 198 67.2
Gohir.D05G029600 Gossypium hirsutum HOM05D006529 ORTHO05D008380 5.2e-73 278.1 195 69.2
Gorai.009G029800 Gossypium raimondii HOM05D006529 ORTHO05D008380 5.2e-73 278.1 195 69.2
HanXRQChr09g0238511 Helianthus annuus HOM05D006529 ORTHO05D008380 5.2e-73 278.1 194 68.6
FAN23G2505 Fragaria x ananassa HOM05D006529 ORTHO05D008380 6.8e-73 277.7 195 67.7
FvH4_1g06740 Fragaria vesca HOM05D006529 ORTHO05D008380 1.2e-72 276.9 195 67.7
FAN19G1593 Fragaria x ananassa HOM05D006529 ORTHO05D008380 1.2e-72 276.9 195 67.7
Actinidia29893 Actinidia chinensis HOM05D006529 ORTHO05D008380 2.6e-72 275.8 213 66.7
DCAR_012008 Daucus carota HOM05D006529 ORTHO05D008380 2.6e-72 275.8 206 64.1
Dinv36729 Davidia involucrata HOM05D006529 ORTHO05D008380 2.6e-72 275.8 199 68.8
PGR142G1231 Punica granatum HOM05D006529 ORTHO05D008380 3.4e-72 275.4 200 66.0
Gohir.A05G027800 Gossypium hirsutum HOM05D006529 ORTHO05D008380 4.4e-72 275.0 195 68.7
Thecc.09G094900 Theobroma cacao HOM05D006529 ORTHO05D008380 4.4e-72 275.0 202 68.8
RcHm_v2.0_Chr2g0092481 Rosa chinensis HOM05D006529 ORTHO05D008380 7.5e-72 274.2 193 67.9
SalBow1G6632 Salvia bowleyana HOM05D006529 ORTHO05D008380 9.8e-72 273.9 226 63.3
Haze_25864 Corylus avellana HOM05D006529 ORTHO05D008380 1.7e-71 273.1 193 67.9
SGA_v2.0_scaffold210G42089 Striga asiatica HOM05D006529 ORTHO05D008380 2.8e-71 272.3 186 70.4
COL.COLO4_18251 Corchorus olitorius HOM05D006529 ORTHO05D008380 3.7e-71 271.9 208 65.4
Hund07265 Selenicereus undatus HOM05D006529 ORTHO05D008380 6.3e-71 271.2 198 64.6
FAN14G0658 Fragaria x ananassa HOM05D006529 ORTHO05D008380 8.3e-71 270.8 182 69.2
Nn8g38953 Nelumbo nucifera HOM05D006529 ORTHO05D008380 8.3e-71 270.8 204 67.2
PSO832G0687 Papaver somniferum HOM05D006529 ORTHO05D008380 8.3e-71 270.8 196 68.9
VMungo0251G0255 Vigna mungo HOM05D006529 ORTHO05D008380 1.1e-70 270.4 196 68.9
Glyma.08G031000 Glycine max HOM05D006529 ORTHO05D008380 1.8e-70 269.6 196 69.4
QL02p063543 Quercus lobata HOM05D006529 ORTHO05D008380 3.1e-70 268.9 233 57.9
GSVIVG01015253001 Vitis vinifera HOM05D006529 ORTHO05D008380 5.4e-70 268.1 197 68.5
Lalb_Chr05g0223501 Lupinus albus HOM05D006529 ORTHO05D008380 7.0e-70 267.7 197 67.5
Ciclev10009577m.g Citrus clementina HOM05D006529 ORTHO05D008380 1.2e-69 266.9 195 67.2
Prupe.7G215100 Prunus persica HOM05D006529 ORTHO05D008380 2.0e-69 266.2 198 66.7
Eucgr.C00932 Eucalyptus grandis HOM05D006529 ORTHO05D008380 2.7e-69 265.8 205 62.4
MD02G1072300 Malus domestica HOM05D006529 ORTHO05D008380 2.7e-69 265.8 200 68.0
Glyma.05G223900 Glycine max HOM05D006529 ORTHO05D008380 1.0e-68 263.8 196 67.9
Potri.006G153800 Populus trichocarpa HOM05D006529 ORTHO05D008380 1.0e-68 263.8 197 64.5
PSO063G6648 Papaver somniferum HOM05D006529 ORTHO05D008380 2.9e-68 262.3 196 66.8
Aqoxy7G01329 Aquilegia oxysepala HOM05D006529 ORTHO05D008380 1.5e-67 260.0 197 64.5
Ca_17386_v3 Cicer arietinum L. HOM05D006529 ORTHO05D008380 1.9e-67 259.6 196 66.3
AUR62000487 Chenopodium quinoa HOM05D006529 ORTHO05D008380 2.5e-67 259.2 197 63.5
Ah.06g190810 Amaranthus hybridus HOM05D006529 ORTHO05D008380 1.2e-66 256.9 198 64.1
CANSAT56G2962 Cannabis sativa HOM05D006529 ORTHO05D008380 6.1e-66 254.6 177 69.5
MD15G1202100 Malus domestica HOM05D006529 ORTHO05D008380 6.1e-66 254.6 200 65.0
TWI63G1011 Tripterygium wilfordii HOM05D006529 ORTHO05D008380 6.1e-66 254.6 197 65.5
Nn6g35394 Nelumbo nucifera HOM05D006529 ORTHO05D008380 8.0e-66 254.2 202 62.4
CSS0046887 Camellia sinensis var. sinensis HOM05D006529 ORTHO05D008380 1.4e-65 253.4 199 64.8
Medtr8g101990 Medicago truncatula HOM05D006529 ORTHO05D008380 1.8e-65 253.1 196 62.2
arahy.Tifrunner.gnm1.ann1.YG2MQU Arachis hypogaea HOM05D006529 ORTHO05D008380 2.3e-65 252.7 195 61.5
AUR62006831 Chenopodium quinoa HOM05D006529 ORTHO05D008380 4.0e-65 251.9 197 61.9
Thhalv10026289m.g Eutrema salsugineum HOM05D006529 ORTHO05D008380 4.0e-65 251.9 197 61.9
Sp7g24240 Schrenkiella parvula HOM05D006529 ORTHO05D008380 8.9e-65 250.8 197 61.9
arahy.Tifrunner.gnm1.ann1.HB8I5Y Arachis hypogaea HOM05D006529 ORTHO05D008380 1.5e-64 250.0 195 61.0
A03p56550 Brassica napus HOM05D006529 ORTHO05D008380 2.0e-64 249.6 199 60.3
Aqoxy199s004 Aquilegia oxysepala HOM05D006529 ORTHO05D008380 5.7e-64 248.1 190 63.2
Lj4g0018594 Lotus japonicus HOM05D006529 ORTHO05D008380 1.3e-63 246.9 196 63.8
Phvul.002G305700 Phaseolus vulgaris HOM05D006529 ORTHO05D008380 1.7e-63 246.5 196 64.8
Psat7g019320 Pisum sativum HOM05D006529 ORTHO05D008380 6.4e-63 244.6 196 63.3
AL7G26720 Arabidopsis lyrata HOM05D006529 ORTHO05D008380 1.8e-62 243.0 197 60.4
Carub.0007s1471 Capsella rubella HOM05D006529 ORTHO05D008380 2.4e-62 242.7 197 60.4
CARHR233790 Cardamine hirsuta HOM05D006529 ORTHO05D008380 2.4e-62 242.7 197 58.9
AT4G26240 Arabidopsis thaliana HOM05D006529 ORTHO05D008380 3.2e-62 242.3 197 59.4
ClCG03G015880 Citrullus lanatus HOM05D006529 ORTHO05D008380 3.2e-62 242.3 200 60.0
C07p54750 Brassica napus HOM05D006529 ORTHO05D008380 5.4e-62 241.5 199 58.8
BolC7t45964H Brassica oleracea HOM05D006529 ORTHO05D008380 5.4e-62 241.5 199 58.8
CDE05G3131 Ceratophyllum demersum HOM05D006529 ORTHO05D008380 9.2e-62 240.7 192 57.8
THA.LOC104813489 Tarenaya hassleriana HOM05D006529 ORTHO05D008380 1.2e-61 240.4 196 60.7
BcaC06g32765 Brassica carinata HOM05D006529 ORTHO05D008380 2.7e-61 239.2 201 58.7
Peaxi162Scf00883g01013 Petunia axillaris HOM05D006529 ORTHO05D008380 5.9e-61 238.0 201 60.2
BraA03t14725Z Brassica rapa HOM05D006529 ORTHO05D008380 1.7e-60 236.5 200 58.0
Sed0011062 Sechium edule HOM05D006529 ORTHO05D008380 2.1e-58 229.6 193 59.1
MELO3C015437.2 Cucumis melo HOM05D006529 ORTHO05D008380 4.1e-54 215.3 200 55.5
Lsat_1_v5_gn_7_38121 Lactuca sativa HOM05D006529 ORTHO05D008380 4.3e-51 205.3 148 66.9
CsaV3_UNG050340 Cucumis sativus L. HOM05D006529 ORTHO05D008380 1.1e-49 200.7 138 65.9
Zm00001eb356780 Zea mays HOM05D006529 ORTHO05D008380 1.8e-49 199.9 165 57.0
FAN26G1500 Fragaria x ananassa HOM05D006529 ORTHO05D008380 3.4e-48 195.7 209 55.0
TPR.G17281 Trifolium pratense HOM05D006529 ORTHO05D008380 4.4e-48 195.3 142 61.3
Os01g0559300 Oryza sativa ssp. japonica HOM05D006529 ORTHO05D008380 6.4e-47 191.4 170 54.1
CANSAT56G3512 Cannabis sativa HOM05D006529 ORTHO05D008380 3.0e-44 182.6 164 56.7
SalBow1G6389 Salvia bowleyana HOM05D006529 ORTHO05D008380 2.8e-42 176.0 119 68.1
Sc18g0001790 Simmondsia chinensis HOM05D006529 ORTHO05D008380 6.8e-41 171.4 148 61.5
Cpa.g.sc78.59 Carica papaya HOM05D006529 ORTHO05D008380 6.4e-39 164.9 192 50.5
Aa31LG3G600 Aethionema arabicum HOM05D006529 ORTHO05D008380 1.1e-35 154.1 163 52.8
FAN26G3434 Fragaria x ananassa HOM05D006529 ORTHO05D008380 9.0e-33 144.4 131 52.7
CsaV3_1G040070 Cucumis sativus L. HOM05D006529 ORTHO05D008380 1.2e-32 144.1 165 50.9
HanXRQChr03g0061021 Helianthus annuus HOM05D006529 ORTHO05D008380 2.7e-29 132.9 106 60.4
SMO164G0011 Selaginella moellendorffii HOM05D006529 ORTHO05D008380 2.4e-25 119.8 165 38.8
Nitab4.5_0009098g0020 Nicotiana tabacum HOM05D006529 ORTHO05D008380 5.3e-25 118.6 86 70.9
SHI02792 Sapria himalayana HOM05D006529 ORTHO05D008380 5.3e-25 118.6 113 49.6
Lalb_Chr09g0331701 Lupinus albus HOM05D006529 ORTHO05D008380 1.1e-22 110.9 64 73.4
Sabra06G0122000 Salix brachista HOM05D006529 ORTHO05D008380 2.4e-22 109.8 95 61.1
FAN27G1398 Fragaria x ananassa HOM05D006529 ORTHO05D008380 6.7e-20 101.7 72 70.8
Sabra06G0121800 Salix brachista HOM05D006529 ORTHO05D008380 2.1e-18 96.7 51 78.4
CBR_g10883 Chara braunii HOM05D006529 ORTHO05D008380 4.8e-18 95.5 169 33.7
HPP92_005506 Vanilla planifolia HOM05D006529 ORTHO05D008380 3.1e-17 92.8 165 37.0
HanXRQChr03g0061031 Helianthus annuus HOM05D006529 ORTHO05D008380 3.8e-15 85.9 86 54.7
SHI02791 Sapria himalayana HOM05D006529 ORTHO05D008380 7.9e-13 78.2 49 63.3
PGSC0003DMG400015618 Solanum tuberosum HOM05D006529 ORTHO05D008380 7.9e-13 78.2 72 63.9
Sopen08g011810 Solanum pennellii HOM05D006529 ORTHO05D008380 1.6e-10 70.5 39 74.4
Solyc08g041690.1 Solanum lycopersicum HOM05D006529 ORTHO05D008380 5.3e-09 65.5 36 75.0
Lalb_Chr09g0331711 Lupinus albus HOM05D006529 ORTHO05D008380 3.4e-08 62.8 45 68.9
FAN02G1845 Fragaria x ananassa HOM05D000599 ORTHO05D000554 7.6e-08 61.6 87 50.6
RcHm_v2.0_Chr7g0226351 Rosa chinensis HOM05D006529 ORTHO05D008380 1.3e-07 60.8 54 59.3


User provided reference genes

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