Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g10600 Coffea canephora HOM05D007850 ORTHO05D009594 3.2e-37 157.9 79 100.0
Nn8g39046 Nelumbo nucifera HOM05D007850 ORTHO05D009594 2.3e-19 98.6 73 69.9
Nitab4.5_0003079g0010 Nicotiana tabacum HOM05D007850 ORTHO05D009594 3.0e-19 98.2 78 62.8
Eucgr.K01055 Eucalyptus grandis HOM05D007850 ORTHO05D009594 2.5e-18 95.1 73 61.6
Haze_25835 Corylus avellana HOM05D007850 ORTHO05D009594 3.3e-18 94.7 73 68.5
Manes.03G028100 Manihot esculenta HOM05D007850 ORTHO05D009594 3.3e-18 94.7 73 65.8
Cpa.g.sc78.26 Carica papaya HOM05D007850 ORTHO05D009594 9.6e-18 93.2 78 61.5
Duzib168G0149 Durio zibethinus HOM05D007850 ORTHO05D009594 1.6e-17 92.4 73 63.0
Nitab4.5_0000566g0200 Nicotiana tabacum HOM05D007850 ORTHO05D009594 1.6e-17 92.4 78 59.0
Cfa003164 Carpinus fangiana HOM05D007850 ORTHO05D009594 3.6e-17 91.3 73 65.8
MELO3C015421.2 Cucumis melo HOM05D007850 ORTHO05D009594 6.2e-17 90.5 72 66.7
Gohir.A07G009000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 6.2e-17 90.5 73 61.6
CANSAT56G2953 Cannabis sativa HOM05D007850 ORTHO05D009594 8.1e-17 90.1 77 59.7
Thecc.09G099000 Theobroma cacao HOM05D007850 ORTHO05D009594 8.1e-17 90.1 73 63.0
ClCG03G016060 Citrullus lanatus HOM05D007850 ORTHO05D009594 1.1e-16 89.7 73 64.4
Gohir.D06G066600 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.4e-16 89.4 73 63.0
Gorai.010G078100 Gossypium raimondii HOM05D007850 ORTHO05D009594 1.4e-16 89.4 73 63.0
Potri.015G106700 Populus trichocarpa HOM05D007850 ORTHO05D009594 1.4e-16 89.4 72 65.3
Gohir.D07G009300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.8e-16 89.0 73 60.3
Gorai.001G009500 Gossypium raimondii HOM05D007850 ORTHO05D009594 1.8e-16 89.0 73 60.3
Peaxi162Scf00944g00009 Petunia axillaris HOM05D007850 ORTHO05D009594 2.4e-16 88.6 79 60.8
Gohir.D08G264200 Gossypium hirsutum HOM05D007850 ORTHO05D009594 4.0e-16 87.8 73 61.6
Gorai.004G282100 Gossypium raimondii HOM05D007850 ORTHO05D009594 4.0e-16 87.8 73 61.6
Hma1.2p1_0208F.1_g088080 Hydrangea macrophylla HOM05D007850 ORTHO05D009594 5.3e-16 87.4 73 57.5
TAR624G0098 Trochodendron aralioides HOM05D007850 ORTHO05D009594 1.2e-15 86.3 73 61.6
Prupe.7G218200 Prunus persica HOM05D007850 ORTHO05D009594 1.5e-15 85.9 70 64.3
Gohir.A06G068000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 2.0e-15 85.5 73 61.6
Sabra12G0079700 Salix brachista HOM05D007850 ORTHO05D009594 2.0e-15 85.5 55 70.9
Glyma.01G006200 Glycine max HOM05D007850 ORTHO05D009594 2.6e-15 85.1 75 58.7
Actinidia17514 Actinidia chinensis HOM05D007850 ORTHO05D009594 3.4e-15 84.7 72 61.1
SalBow6G1226 Salvia bowleyana HOM05D007850 ORTHO05D009594 4.5e-15 84.3 69 60.9
QL08p048105 Quercus lobata HOM05D007850 ORTHO05D009594 5.8e-15 84.0 73 61.6
Gohir.A08G243300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 9.9e-15 83.2 73 60.3
Ciclev10010071m.g Citrus clementina HOM05D007850 ORTHO05D009594 1.3e-14 82.8 73 58.9
Glyma.07G125500 Glycine max HOM05D007850 ORTHO05D009594 1.3e-14 82.8 73 58.9
arahy.Tifrunner.gnm1.ann1.X02Y3Q Arachis hypogaea HOM05D007850 ORTHO05D009594 1.7e-14 82.4 74 62.2
CSS0000041 Camellia sinensis var. sinensis HOM05D007850 ORTHO05D009594 1.7e-14 82.4 77 55.8
FAN23G2338 Fragaria x ananassa HOM05D007850 ORTHO05D009594 1.7e-14 82.4 73 57.5
FAN26G0602 Fragaria x ananassa HOM05D007850 ORTHO05D009594 1.7e-14 82.4 73 57.5
FAN26G2005 Fragaria x ananassa HOM05D007850 ORTHO05D009594 1.7e-14 82.4 73 57.5
Phvul.004G174800 Phaseolus vulgaris HOM05D007850 ORTHO05D009594 1.7e-14 82.4 73 60.3
FAN28G1089 Fragaria x ananassa HOM05D007850 ORTHO05D009594 2.2e-14 82.0 73 57.5
FvH4_1g06390 Fragaria vesca HOM05D007850 ORTHO05D009594 3.8e-14 81.3 73 56.2
FAN19G1200 Fragaria x ananassa HOM05D007850 ORTHO05D009594 3.8e-14 81.3 73 56.2
Lalb_Chr22g0352511 Lupinus albus HOM05D007850 ORTHO05D009594 4.9e-14 80.9 73 61.6
Psat1g048160 Pisum sativum HOM05D007850 ORTHO05D009594 6.4e-14 80.5 72 61.1
RcHm_v2.0_Chr2g0092131 Rosa chinensis HOM05D007850 ORTHO05D009594 6.4e-14 80.5 78 55.1
PGSC0003DMG400000292 Solanum tuberosum HOM05D007850 ORTHO05D009594 1.1e-13 79.7 77 54.5
Rhsim05G0038300 Rhododendron simsii HOM05D007850 ORTHO05D009594 1.4e-13 79.3 76 59.2
arahy.Tifrunner.gnm1.ann1.X1KXE8 Arachis hypogaea HOM05D012186 ORTHO05D009594 1.9e-13 79.0 73 61.6
QL03p050300 Quercus lobata HOM05D007850 ORTHO05D009594 1.9e-13 79.0 73 60.3
Solyc12g008560.1 Solanum lycopersicum HOM05D007850 ORTHO05D009594 1.9e-13 79.0 77 54.5
Ca_25585_v3 Cicer arietinum L. HOM05D007850 ORTHO05D009594 3.2e-13 78.2 72 59.7
CsaV3_1G039900 Cucumis sativus L. HOM05D007850 ORTHO05D009594 5.4e-13 77.4 56 71.4
Ciclev10006350m.g Citrus clementina HOM05D007850 ORTHO05D009594 2.1e-12 75.5 73 54.8
Sed0003200 Sechium edule HOM05D007850 ORTHO05D009594 2.7e-12 75.1 73 54.8
COL.COLO4_34726 Corchorus olitorius HOM05D007850 ORTHO05D009594 6.0e-12 73.9 56 64.3
TPR.G33528 Trifolium pratense HOM05D007850 ORTHO05D009594 6.0e-12 73.9 73 56.2
EL10Ac8g18368 Beta vulgaris HOM05D007850 ORTHO05D009594 1.3e-11 72.8 74 54.1
AUR62010878 Chenopodium quinoa HOM05D007850 ORTHO05D009594 1.3e-11 72.8 78 48.7
Lj2g0008653 Lotus japonicus HOM05D007850 ORTHO05D009594 1.3e-11 72.8 73 54.8
Medtr6g090490 Medicago truncatula HOM05D007850 ORTHO05D009594 1.8e-11 72.4 73 53.4
DCAR_012035 Daucus carota HOM05D007850 ORTHO05D009594 2.3e-11 72.0 75 56.0
CAN.G1591.18 Capsicum annuum HOM05D007850 ORTHO05D009594 3.0e-11 71.6 75 50.7
CAN.G2021.4 Capsicum annuum HOM05D007850 ORTHO05D009594 3.0e-11 71.6 75 50.7
DCAR_000091 Daucus carota HOM05D007850 ORTHO05D009594 3.0e-11 71.6 75 56.0
DCAR_012032 Daucus carota HOM05D007850 ORTHO05D009594 3.0e-11 71.6 75 56.0
Lsat_1_v5_gn_7_39541 Lactuca sativa HOM05D007850 ORTHO05D009594 3.0e-11 71.6 79 55.7
AUR62021391 Chenopodium quinoa HOM05D007850 ORTHO05D009594 8.7e-11 70.1 78 48.7
Sc18g0001560 Simmondsia chinensis HOM05D007850 ORTHO05D009594 1.5e-10 69.3 77 51.9
CAN.G1677.12 Capsicum annuum HOM05D007850 ORTHO05D009594 1.9e-10 68.9 75 49.3
unitig_8.g4473 Utricularia gibba HOM05D007850 ORTHO05D009594 1.9e-10 68.9 51 60.8
CAN.G1357.32 Capsicum annuum HOM05D007850 ORTHO05D009594 4.3e-10 67.8 75 49.3
Sopen12g003500 Solanum pennellii HOM05D007850 ORTHO05D009594 5.6e-10 67.4 68 51.5
CDE06G1893 Ceratophyllum demersum HOM05D007850 ORTHO05D009594 1.6e-09 65.9 51 64.7
CAN.G1349.15 Capsicum annuum HOM05D007850 ORTHO05D009594 2.1e-09 65.5 75 48.0
Ah.09g230500 Amaranthus hybridus HOM05D007850 ORTHO05D009594 2.8e-09 65.1 72 52.8
CAN.G1084.1 Capsicum annuum HOM05D007850 ORTHO05D009594 4.8e-09 64.3 75 48.0
Aqoxy7G01385 Aquilegia oxysepala HOM05D007850 ORTHO05D009594 1.1e-08 63.2 82 47.6
ECA240G2374 Erigeron canadensis HOM05D004751 ORTHO05D005819 1.4e-08 62.8 61 57.4
ATR0705G131 Amborella trichopoda HOM05D007850 ORTHO05D009594 2.4e-08 62.0 74 50.0
SEGI_13362 Sequoiadendron giganteum HOM05D007850 ORTHO05D009594 7.6e-07 57.0 64 50.0
Actinidia21359 Actinidia chinensis HOM05D007850 ORTHO05D009594 9.9e-07 56.6 84 40.5
Zm00001eb283490 Zea mays HOM05D058780 ORTHO05D009594 2.9e-06 55.1 64 51.6
SMO358G0245 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 8.4e-06 53.5 58 48.3


User provided reference genes

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