Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g10440 Coffea canephora HOM05D002451 ORTHO05D007901 0.0e+00 1170.2 578 100.0
Hma1.2p1_0571F.1_g180680 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 2.3e-217 759.2 524 71.8
CSS0003026 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D007901 3.8e-212 741.9 526 69.0
Nitab4.5_0005668g0020 Nicotiana tabacum HOM05D002451 ORTHO05D007901 8.4e-212 740.7 510 70.8
PGSC0003DMG400000298 Solanum tuberosum HOM05D002451 ORTHO05D007901 9.3e-211 737.3 529 69.6
Sopen12g003400 Solanum pennellii HOM05D002451 ORTHO05D007901 3.5e-210 735.3 527 69.6
Solyc12g008450.2 Solanum lycopersicum HOM05D002451 ORTHO05D007901 1.0e-209 733.8 529 69.2
Actinidia32654 Actinidia chinensis HOM05D002451 ORTHO05D007901 3.0e-209 732.3 527 68.1
vmacro06250 Vaccinium macrocarpon HOM05D002451 ORTHO05D007901 1.1e-208 730.3 527 68.7
Duzib168G1562 Durio zibethinus HOM05D002451 ORTHO05D007901 3.1e-206 722.2 511 70.1
GSVIVG01015305001 Vitis vinifera HOM05D002451 ORTHO05D007901 4.0e-206 721.8 525 68.0
Dinv36690 Davidia involucrata HOM05D002451 ORTHO05D007901 5.3e-206 721.5 494 72.1
Gorai.009G027400 Gossypium raimondii HOM05D002451 ORTHO05D007901 2.6e-205 719.2 512 69.3
Rhsim03G0237000 Rhododendron simsii HOM05D002451 ORTHO05D007901 2.6e-205 719.2 531 67.2
Oeu053181.2 Olea europaea HOM05D002451 ORTHO05D007901 5.8e-205 718.0 529 68.4
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.3e-204 716.8 576 63.5
MSTRG.10604 Avicennia marina HOM05D002451 ORTHO05D007901 6.4e-204 714.5 520 67.9
Atru.chr7.1460 Acer truncatum HOM05D002451 ORTHO05D007901 2.4e-203 712.6 522 66.5
CiPaw.03G225500 Carya illinoinensis HOM05D002451 ORTHO05D007901 5.4e-203 711.4 531 66.9
Potri.018G087300 Populus trichocarpa HOM05D002451 ORTHO05D007901 3.0e-201 705.7 523 66.0
ClCG11G002150 Citrullus lanatus HOM05D002451 ORTHO05D007901 9.6e-200 700.7 527 66.4
Lalb_Chr05g0223211 Lupinus albus HOM05D002451 ORTHO05D007901 4.8e-199 698.4 519 66.5
Medtr8g102540 Medicago truncatula HOM05D002451 ORTHO05D007901 4.8e-199 698.4 510 68.2
Psat7g017040 Pisum sativum HOM05D002451 ORTHO05D007901 5.3e-198 694.9 529 65.8
Lj4g0024953 Lotus japonicus HOM05D002451 ORTHO05D007901 1.2e-197 693.7 523 66.5
CsaV3_2G001930 Cucumis sativus L. HOM05D002451 ORTHO05D007901 4.5e-197 691.8 520 66.0
Aqoxy7G01412 Aquilegia oxysepala HOM05D002451 ORTHO05D007901 2.4e-195 686.0 535 64.1
FAN23G2627 Fragaria x ananassa HOM05D002451 ORTHO05D007901 7.9e-194 681.0 528 63.4
EL10Ac8g18383 Beta vulgaris HOM05D002451 ORTHO05D007901 1.0e-193 680.6 538 64.3
CANSAT56G2212 Cannabis sativa HOM05D002451 ORTHO05D007901 3.9e-193 678.7 516 64.5
FAN26G3439 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.5e-192 676.8 528 64.0
RcHm_v2.0_Chr2g0091831 Rosa chinensis HOM05D002451 ORTHO05D007901 1.5e-192 676.8 538 63.4
arahy.Tifrunner.gnm1.ann1.GUCG30 Arachis hypogaea HOM05D002451 ORTHO05D007901 9.6e-192 674.1 528 62.9
MD02G1065300 Malus domestica HOM05D002451 ORTHO05D007901 1.6e-191 673.3 524 64.5
FAN28G1338 Fragaria x ananassa HOM05D002451 ORTHO05D007901 2.1e-191 672.9 528 63.3
Lj7A665T28 Lonicera japonica HOM05D002451 ORTHO05D007901 4.8e-191 671.8 632 56.3
FAN26G0432 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.8e-190 669.8 528 63.6
Eucgr.C00999 Eucalyptus grandis HOM05D002451 ORTHO05D007901 3.1e-190 669.1 534 62.7
MBI04_g20306_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D007901 4.0e-190 668.7 517 64.0
Sc08g0008000 Simmondsia chinensis HOM05D002451 ORTHO05D007901 6.9e-190 667.9 510 65.7
Glyma.05G227000 Glycine max HOM05D002451 ORTHO05D007901 1.5e-189 666.8 525 64.8
Lsat_1_v5_gn_7_39761 Lactuca sativa HOM05D002451 ORTHO05D007901 8.4e-188 661.0 500 64.8
Peaxi162Scf00665g00035 Petunia axillaris HOM05D002451 ORTHO05D007901 1.4e-187 660.2 525 64.4
Migut.K00538 Erythranthe guttata HOM05D002451 ORTHO05D007901 1.9e-187 659.8 518 65.6
AT2G40570 Arabidopsis thaliana HOM05D002451 ORTHO05D007901 1.2e-186 657.1 513 62.8
COL.COLO4_34751 Corchorus olitorius HOM05D002451 ORTHO05D007901 4.6e-186 655.2 512 63.9
Sp4g22900 Schrenkiella parvula HOM05D002451 ORTHO05D007901 3.9e-185 652.1 517 62.3
SalBow1G3696 Salvia bowleyana HOM05D002451 ORTHO05D007901 1.9e-184 649.8 525 63.2
AL4G38420 Arabidopsis lyrata HOM05D002451 ORTHO05D007901 3.3e-184 649.0 512 62.5
SalBow1G8658 Salvia bowleyana HOM05D002451 ORTHO05D007901 7.4e-184 647.9 525 63.0
HPP92_009804 Vanilla planifolia HOM05D002451 ORTHO05D007901 1.1e-182 644.0 527 60.5
ATR0705G045 Amborella trichopoda HOM05D002451 ORTHO05D007901 2.0e-181 639.8 536 59.3
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 2.0e-181 639.8 482 66.8
CARHR135670 Cardamine hirsuta HOM05D002451 ORTHO05D007901 4.5e-181 638.6 514 62.3
THA.LOC104807537 Tarenaya hassleriana HOM05D002451 ORTHO05D007901 5.0e-180 635.2 516 60.7
MELO3C004587.2 Cucumis melo HOM05D002451 ORTHO05D007901 1.1e-179 634.0 512 62.9
BcaC02g07322 Brassica carinata HOM05D002451 ORTHO05D007901 7.2e-179 631.3 518 59.3
BcaB06g29152 Brassica carinata HOM05D002451 ORTHO05D007901 9.3e-179 630.9 518 59.7
Thhalv10016464m.g Eutrema salsugineum HOM05D002451 ORTHO05D007901 1.2e-178 630.6 538 58.9
TWI34G1500 Tripterygium wilfordii HOM05D002451 ORTHO05D007901 4.6e-178 628.6 492 64.2
Ah.14g083250 Amaranthus hybridus HOM05D002451 ORTHO05D007901 7.9e-178 627.9 521 62.6
A04p31020 Brassica napus HOM05D002451 ORTHO05D007901 5.1e-177 625.2 520 59.2
BolC4t28342H Brassica oleracea HOM05D002451 ORTHO05D007901 3.3e-176 622.5 518 58.1
BraA04t18559Z Brassica rapa HOM05D002451 ORTHO05D007901 4.3e-176 622.1 518 58.9
C04p68410 Brassica napus HOM05D002451 ORTHO05D007901 4.8e-175 618.6 520 58.5
Sabra18G0075400 Salix brachista HOM05D002451 ORTHO05D007901 4.1e-174 615.5 566 56.0
AUR62010914 Chenopodium quinoa HOM05D002451 ORTHO05D007901 2.1e-170 603.2 513 61.0
DCAR_012039 Daucus carota HOM05D002451 ORTHO05D007901 2.7e-170 602.8 472 62.7
PSO063G0860 Papaver somniferum HOM05D002451 ORTHO05D007901 6.7e-169 598.2 475 63.2
TPR.G23434 Trifolium pratense HOM05D002451 ORTHO05D007901 6.7e-169 598.2 477 64.2
Os06g0555500 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D007901 8.8e-169 597.8 516 58.3
Aa31LG3G1530 Aethionema arabicum HOM05D002451 ORTHO05D007901 1.1e-168 597.4 611 50.9
PGR142G3373 Punica granatum HOM05D002451 ORTHO05D007901 2.0e-168 596.7 476 63.2
Hma1.2p1_0571F.1_g180690 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 6.9e-166 588.2 426 69.2
Hund09106 Selenicereus undatus HOM05D002451 ORTHO05D007901 3.4e-165 585.9 614 54.2
VMungo0251G0535 Vigna mungo HOM05D002451 ORTHO05D007901 1.9e-163 580.1 437 66.1
Sed0018496 Sechium edule HOM05D002451 ORTHO05D007901 7.2e-163 578.2 454 63.4
SHI02693 Sapria himalayana HOM05D002451 ORTHO05D007901 3.6e-162 575.9 540 55.0
SEGI_00986 Sequoiadendron giganteum HOM05D002451 ORTHO05D007901 2.2e-156 556.6 539 53.2
CAN.G1241.33 Capsicum annuum HOM05D002451 ORTHO05D007901 6.5e-156 555.1 385 71.7
SGA_v2.0_scaffold843G53664 Striga asiatica HOM05D002451 ORTHO05D007901 3.0e-153 546.2 453 60.9
Ciclev10008594m.g Citrus clementina HOM05D002451 ORTHO05D007901 8.8e-153 544.7 376 70.5
Manes.16G108300 Manihot esculenta HOM05D002451 ORTHO05D007901 7.0e-150 535.0 434 61.1
Nn8g39075 Nelumbo nucifera HOM05D002451 ORTHO05D007901 9.1e-150 534.6 443 59.8
Mapoly0002s0306 Marchantia polymorpha HOM05D002451 ORTHO05D007901 2.1e-146 523.5 547 48.6
FAN19G3003 Fragaria x ananassa HOM05D002451 ORTHO05D007901 3.6e-146 522.7 417 63.1
Thecc.09G101000 Theobroma cacao HOM05D002451 ORTHO05D007901 1.8e-145 520.4 407 64.9
Prupe.7G220200 Prunus persica HOM05D002451 ORTHO05D007901 6.8e-145 518.5 436 61.7
Pp3c1_19270 Physcomitrium patens HOM05D002451 ORTHO05D007901 1.7e-143 513.8 570 48.4
Zm00001eb384640 Zea mays HOM05D002451 ORTHO05D007901 2.8e-143 513.1 475 55.6
Cfa003184 Carpinus fangiana HOM05D002451 ORTHO05D007901 4.8e-143 512.3 413 63.0
Gohir.A05G025800 Gossypium hirsutum HOM05D002451 ORTHO05D007901 2.4e-142 510.0 401 64.3
CAN.G1642.1 Capsicum annuum HOM05D002451 ORTHO05D007901 6.1e-138 495.4 431 59.4
AagrBONN_evm.TU.Sc2ySwM_117.4166 Anthoceros agrestis HOM05D002451 ORTHO05D007901 1.5e-136 490.7 554 48.7
FvH4_1g06070 Fragaria vesca HOM05D002451 ORTHO05D007901 9.2e-134 481.5 413 59.3
SpUn0061_0010 Schrenkiella parvula HOM05D002451 ORTHO05D007901 2.0e-133 480.3 372 64.2
AUR62021412 Chenopodium quinoa HOM05D002451 ORTHO05D007901 2.7e-133 479.9 439 57.2
Phvul.002G309000 Phaseolus vulgaris HOM05D002451 ORTHO05D007901 2.7e-133 479.9 397 60.7
HanXRQChr09g0238871 Helianthus annuus HOM05D002451 ORTHO05D007901 1.5e-131 474.2 379 62.0
SMO118G0195 Selaginella moellendorffii HOM05D002451 ORTHO05D007901 7.8e-125 451.8 501 48.5
Carub.0004s2284 Capsella rubella HOM05D002451 ORTHO05D007901 5.0e-116 422.5 362 58.6
CDE08G0666 Ceratophyllum demersum HOM05D002257 ORTHO05D007901 2.0e-112 410.6 360 56.1
MD15G1196200 Malus domestica HOM05D002451 ORTHO05D007901 3.2e-110 403.3 512 45.7
TAR636G1745 Trochodendron aralioides HOM05D002451 ORTHO05D007901 6.4e-103 379.0 388 52.8
SGA_v2.0_scaffold19G08736 Striga asiatica HOM05D002451 ORTHO05D007901 1.9e-102 377.5 335 57.9
Gohir.D05G027300 Gossypium hirsutum HOM05D002451 ORTHO05D007901 4.6e-85 319.7 258 62.8
CBR_g41536 Chara braunii HOM05D002451 ORTHO05D007901 4.9e-79 299.7 511 36.0
ECA240G2417 Erigeron canadensis HOM05D002451 ORTHO05D007901 1.2e-77 295.0 426 42.5
unitig_46.g18399 Utricularia gibba HOM05D002451 ORTHO05D007901 5.3e-73 279.6 269 55.8
SGA_v2.0_scaffold4172G54434 Striga asiatica HOM05D002451 ORTHO05D007901 5.5e-70 269.6 243 56.4
MCO03G573 Micromonas commoda HOM05D002451 ORTHO05D007901 3.7e-66 256.9 584 32.9
QL02p041683 Quercus lobata HOM05D002451 ORTHO05D007901 1.9e-62 244.6 131 85.5
SGA_v2.0_scaffold19G08729 Striga asiatica HOM05D002451 ORTHO05D007901 1.0e-60 238.8 136 81.6
PRCOL_00006066 Prasinoderma coloniale HOM05D000173 ORTHO05D004400 5.7e-51 206.5 335 36.1
CDE02G1621 Ceratophyllum demersum HOM05D002451 ORTHO05D007901 1.5e-48 198.4 158 60.1
CAN.G4309.1 Capsicum annuum HOM05D002451 ORTHO05D007901 1.1e-46 192.2 154 62.3
Nitab4.5_0000566g0090 Nicotiana tabacum HOM05D002451 ORTHO05D007901 1.2e-40 172.2 89 89.9
Cre06.g272100 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D007901 1.3e-39 168.7 128 59.4
Cpa.g.sc40.100 Carica papaya HOM05D002451 ORTHO05D007901 8.5e-39 166.0 89 86.5
Nn1g07675 Nelumbo nucifera HOM05D002451 ORTHO05D007901 3.2e-38 164.1 108 68.5
Cpa.g.c44357 Carica papaya HOM05D002451 ORTHO05D007901 3.3e-35 154.1 145 56.6
unitig_46.g18400 Utricularia gibba HOM05D002451 ORTHO05D007901 9.1e-33 146.0 94 71.3
Ciclev10010851m.g Citrus clementina HOM05D002451 ORTHO05D007901 1.6e-24 118.6 71 76.1
CBR_g41538 Chara braunii HOM05D002451 ORTHO05D007901 1.0e-20 105.9 112 51.8
TAR636G3106 Trochodendron aralioides HOM05D002451 ORTHO05D007901 8.6e-15 86.3 47 78.7
TPR.G23499 Trifolium pratense HOM05D002451 ORTHO05D007901 1.2e-13 82.4 50 72.0


User provided reference genes

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