Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 1.9e-279 965.3 538 100.0
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 3.1e-168 595.9 529 67.3
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.7e-153 547.0 519 64.2
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.7e-153 547.0 519 64.2
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.4e-152 543.1 529 62.4
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 5.0e-150 535.4 529 61.6
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 8.2e-145 518.1 529 59.4
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 1.3e-142 510.8 538 60.2
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 6.5e-142 508.4 531 59.9
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 8.0e-140 501.5 540 58.1
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 1.8e-139 500.4 534 59.0
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 2.3e-139 500.0 529 59.0
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 1.5e-138 497.3 540 57.8
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 5.3e-136 488.8 526 57.8
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 5.3e-136 488.8 534 57.9
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.6e-135 487.3 571 55.5
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 3.5e-135 486.1 530 58.1
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 1.7e-134 483.8 542 58.5
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 6.5e-134 481.9 532 58.5
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 1.1e-133 481.1 573 55.0
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.5e-133 480.7 529 58.0
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 4.2e-133 479.2 530 57.7
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 7.2e-133 478.4 534 59.0
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 6.1e-132 475.3 532 57.1
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 8.0e-132 474.9 548 56.0
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 1.4e-131 474.2 531 57.1
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 1.4e-131 474.2 528 58.1
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.0e-131 473.0 538 58.6
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 2.0e-130 470.3 530 56.8
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 4.4e-130 469.2 534 57.3
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 6.3e-129 465.3 532 57.3
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 6.3e-129 465.3 526 57.0
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 1.1e-128 464.5 531 56.7
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 1.4e-128 464.2 534 57.1
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 4.5e-127 459.1 534 56.9
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 1.7e-126 457.2 531 56.3
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 3.8e-126 456.1 518 58.1
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 6.5e-126 455.3 527 55.8
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 1.6e-124 450.7 525 56.0
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 3.0e-123 446.4 530 56.6
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 8.8e-123 444.9 529 55.8
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 8.8e-123 444.9 540 55.2
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.0e-122 443.7 532 54.3
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 4.4e-122 442.6 534 54.9
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 1.7e-121 440.7 553 53.7
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.7e-121 439.5 545 55.4
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 4.1e-120 436.0 527 55.4
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 7.7e-119 431.8 400 67.2
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 1.5e-117 427.6 532 54.3
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 5.5e-117 425.6 545 53.2
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 9.5e-117 424.9 535 53.5
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 6.1e-116 422.2 545 53.2
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 1.0e-115 421.4 428 63.1
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 1.4e-115 421.0 545 53.2
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 2.6e-114 416.8 561 52.0
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 7.5e-114 415.2 521 52.6
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 1.7e-113 414.1 526 54.0
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 8.3e-113 411.8 549 51.9
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.1e-112 411.4 554 52.9
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 5.4e-112 409.1 546 50.2
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 1.0e-110 404.8 534 51.7
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 1.3e-110 404.4 550 49.5
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 2.5e-109 400.2 546 51.5
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 2.5e-109 400.2 608 47.5
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 3.3e-109 399.8 540 51.3
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 9.5e-109 398.3 501 53.7
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 1.2e-108 397.9 527 52.8
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 8.0e-108 395.2 501 53.5
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.4e-107 394.4 534 50.9
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 2.2e-105 387.1 542 49.6
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 2.2e-105 387.1 551 49.9
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 3.7e-105 386.3 546 50.2
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 4.9e-105 386.0 533 50.8
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 6.4e-105 385.6 536 51.9
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 8.3e-105 385.2 549 48.3
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 8.3e-105 385.2 536 49.6
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 1.9e-104 384.0 527 50.7
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 2.4e-104 383.6 522 50.6
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.5e-101 374.4 535 49.3
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 2.5e-101 373.6 433 54.0
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 1.2e-100 371.3 516 49.6
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.6e-100 369.8 430 54.2
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 3.6e-100 369.8 569 48.2
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 3.1e-99 366.7 535 49.2
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 8.9e-99 365.2 564 47.3
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 3.4e-98 363.2 536 46.5
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 4.4e-98 362.8 527 50.3
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 4.4e-98 362.8 568 47.9
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 1.4e-96 357.8 539 46.9
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 2.7e-95 353.6 243 81.9
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 7.8e-95 352.1 545 47.7
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 5.1e-94 349.4 548 47.4
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 5.1e-94 349.4 527 47.8
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 1.9e-93 347.4 541 44.9
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 3.6e-92 343.2 613 43.7
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 4.7e-92 342.8 278 70.5
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 1.8e-91 340.9 525 45.9
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 2.3e-91 340.5 554 46.8
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 4.0e-91 339.7 535 47.5
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 2.0e-90 337.4 544 46.7
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 3.4e-90 336.7 574 46.3
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 2.9e-89 333.6 528 45.6
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 1.4e-88 331.3 530 46.8
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 6.6e-86 322.4 537 45.3
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.5e-85 321.2 554 46.4
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.5e-85 321.2 554 46.4
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.9e-85 320.9 575 44.2
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 9.6e-85 318.5 554 46.2
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 8.1e-84 315.5 554 45.8
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 5.4e-80 302.8 550 44.9
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.1e-79 300.8 526 44.5
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 6.0e-79 299.3 384 51.0
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 8.7e-70 268.9 554 42.2
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 2.5e-69 267.3 243 66.3
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 2.1e-63 247.7 563 38.9
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 1.3e-60 238.4 440 42.3
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 1.6e-52 211.5 320 46.2
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 1.3e-49 201.8 271 46.1
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 3.9e-46 190.3 409 40.3
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 8.5e-41 172.6 318 42.1
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.4e-40 171.8 133 74.4
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 5.3e-35 153.3 253 41.9
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.4e-32 145.2 104 79.8
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 6.1e-31 139.8 243 40.7
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 3.9e-30 137.1 189 52.4
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 1.1e-24 119.0 81 82.7
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 5.2e-22 110.2 296 35.1
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 2.6e-13 81.3 56 80.4
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.5e-13 79.7 49 87.8
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.5e-13 79.7 49 87.8
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.3e-12 79.0 65 64.6
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.8e-12 77.8 48 87.5
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 1.4e-11 75.5 48 87.5
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 2.4e-11 74.7 66 60.6
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.2e-10 72.4 48 81.2
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.0e-10 71.6 48 81.2
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 1.0e-09 69.3 202 30.2
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.9e-09 67.8 48 83.3
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 5.0e-09 67.0 46 84.8
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 1.1e-08 65.9 70 55.7
arahy.Tifrunner.gnm1.ann1.G8QSGL Arachis hypogaea HOM05D004485 ORTHO05D005485 1.0e-06 59.3 66 54.5
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.8e-06 58.5 307 28.0


User provided reference genes

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