Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 2.1e-150 535.8 291 100.0
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 3.8e-104 382.1 265 68.7
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 6.1e-102 374.8 265 68.7
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 1.5e-100 370.2 256 68.4
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 2.4e-98 362.8 261 65.9
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 6.5e-96 354.8 261 64.8
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 8.5e-96 354.4 265 65.3
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 4.2e-95 352.1 261 64.4
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 9.4e-95 350.9 264 64.0
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 1.6e-94 350.1 283 62.2
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 6.1e-94 348.2 264 64.0
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 1.8e-93 346.7 264 64.0
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 8.8e-93 344.4 266 60.9
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 1.5e-92 343.6 264 64.0
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 4.4e-92 342.0 258 64.3
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 1.3e-91 340.5 260 63.5
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 2.2e-91 339.7 252 64.7
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 1.4e-90 337.0 253 62.5
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 7.0e-90 334.7 255 65.5
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 8.5e-88 327.8 240 64.6
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 1.9e-87 326.6 253 63.6
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 1.6e-86 323.6 266 62.8
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 3.6e-86 322.4 265 61.1
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 4.7e-86 322.0 251 62.9
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 1.8e-85 320.1 262 60.7
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 1.8e-85 320.1 261 59.4
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 2.3e-85 319.7 261 59.8
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 2.3e-85 319.7 269 57.6
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 2.3e-85 319.7 254 61.0
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 6.7e-85 318.2 262 58.4
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 8.8e-85 317.8 259 61.4
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 1.5e-84 317.0 266 58.3
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 1.5e-84 317.0 265 61.5
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 7.5e-84 314.7 268 56.7
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 9.7e-84 314.3 265 58.1
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 1.3e-83 313.9 269 56.9
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 2.8e-83 312.8 254 60.6
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 1.4e-82 310.5 259 59.5
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 1.4e-82 310.5 256 57.4
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 1.8e-82 310.1 262 61.1
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 4.1e-82 308.9 268 56.3
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 5.3e-82 308.5 266 57.9
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 7.0e-82 308.1 267 57.3
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 9.1e-82 307.8 261 60.2
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 3.5e-81 305.8 253 60.1
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 3.5e-81 305.8 265 60.0
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 4.5e-81 305.4 266 57.5
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 4.5e-81 305.4 259 57.9
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 5.9e-81 305.1 252 59.1
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 5.9e-81 305.1 255 58.8
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 5.9e-81 305.1 252 60.3
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 5.9e-81 305.1 252 59.1
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 1.0e-80 304.3 265 59.6
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 1.0e-80 304.3 259 58.7
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 1.3e-80 303.9 271 54.6
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 1.3e-80 303.9 267 56.9
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 1.7e-80 303.5 259 58.7
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 1.7e-80 303.5 259 58.7
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 2.2e-80 303.1 262 59.2
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 2.9e-80 302.8 265 59.2
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 2.9e-80 302.8 267 56.6
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 2.9e-80 302.8 300 52.3
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 3.8e-80 302.4 265 59.2
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 8.5e-80 301.2 266 56.4
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 1.1e-79 300.8 256 59.0
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 1.1e-79 300.8 256 59.0
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 1.5e-79 300.4 255 58.8
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 1.5e-79 300.4 255 58.8
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 2.5e-79 299.7 255 58.8
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 2.5e-79 299.7 244 56.6
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 7.2e-79 298.1 259 56.0
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 1.2e-78 297.4 256 58.6
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.2e-78 297.4 263 54.8
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 1.2e-78 297.4 263 54.8
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 2.7e-78 296.2 245 59.2
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 3.6e-78 295.8 264 52.3
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.8e-77 293.5 263 54.0
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 2.3e-77 293.1 244 60.7
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 3.0e-77 292.7 275 52.7
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 4.0e-77 292.4 260 53.8
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 2.6e-76 289.7 233 60.9
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 2.6e-76 289.7 259 56.4
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 3.4e-76 289.3 259 56.0
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 5.7e-76 288.5 266 52.3
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 5.7e-76 288.5 253 58.5
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 9.8e-76 287.7 256 56.2
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 1.3e-75 287.3 263 55.1
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 1.3e-75 287.3 266 54.9
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 6.3e-75 285.0 260 54.6
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 3.1e-74 282.7 258 51.9
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 4.5e-73 278.9 274 52.9
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 8.6e-72 274.6 253 54.2
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 4.7e-70 268.9 259 51.7
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 9.8e-68 261.2 234 54.3
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 2.2e-67 260.0 265 48.3
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 2.8e-67 259.6 265 48.3
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 8.3e-67 258.1 219 56.2
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 2.4e-66 256.5 212 60.4
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 4.1e-66 255.8 223 59.2
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 7.0e-66 255.0 249 52.6
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 1.0e-64 251.1 247 53.8
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 2.9e-64 249.6 250 47.6
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 2.3e-61 240.0 326 41.4
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 2.0e-60 236.9 255 45.5
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 5.8e-60 235.3 254 50.8
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 9.8e-60 234.6 259 45.6
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.1e-58 231.1 259 47.1
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 1.9e-58 230.3 266 44.7
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.6e-57 227.3 195 58.5
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 4.6e-57 225.7 293 41.0
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.4e-53 214.2 211 52.6
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.4e-53 214.2 211 52.6
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 6.8e-53 211.8 191 55.5
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 6.4e-51 205.3 207 53.6
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.1e-50 204.5 207 53.6
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 2.7e-49 199.9 271 38.4
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.5e-47 194.1 214 49.5
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 1.4e-45 187.6 237 42.2
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 1.5e-44 184.1 178 48.9
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 1.7e-43 180.6 199 46.7
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.9e-39 167.2 123 64.2
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 2.8e-38 163.3 418 27.5
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 9.9e-36 154.8 142 54.2
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 4.2e-34 149.4 281 31.0
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 5.4e-34 149.1 153 51.6
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 1.0e-32 144.8 133 54.1
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 1.8e-29 134.0 137 54.7
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 3.5e-25 119.8 313 29.4
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 2.3e-24 117.1 375 24.8
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 8.7e-24 115.2 126 52.4
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 4.3e-23 112.8 76 63.2
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 1.6e-22 110.9 133 42.1
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 2.8e-22 110.2 141 44.7
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 3.1e-21 106.7 53 86.8
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 6.4e-19 99.0 137 37.2
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 8.4e-19 98.6 53 79.2
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 8.7e-16 88.6 57 68.4
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 1.5e-15 87.8 56 73.2
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 1.3e-14 84.7 126 39.7
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.8e-13 80.9 77 51.9
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 1.7e-11 74.3 168 32.7
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 7.1e-10 68.9 196 29.6
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 1.1e-07 61.6 38 68.4
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 1.1e-07 61.6 38 68.4
MBI19_g24592_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 2.1e-06 57.4 37 59.5
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 8.2e-06 55.5 29 75.9


User provided reference genes

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