Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g10100 Coffea canephora HOM05D007452 ORTHO05D009375 1.4e-66 256.1 133 100.0
Solyc11g006870.1 Solanum lycopersicum HOM05D007452 ORTHO05D009375 1.1e-53 213.4 133 78.9
Sopen11g002770 Solanum pennellii HOM05D007452 ORTHO05D009375 1.1e-53 213.4 133 78.9
PGSC0003DMG400023982 Solanum tuberosum HOM05D007452 ORTHO05D009375 1.4e-53 213.0 133 78.9
Nitab4.5_0002165g0070 Nicotiana tabacum HOM05D007452 ORTHO05D009375 5.3e-53 211.1 133 78.9
Nitab4.5_0003331g0020 Nicotiana tabacum HOM05D007452 ORTHO05D009375 9.1e-53 210.3 132 78.8
CAN.G645.18 Capsicum annuum HOM05D007452 ORTHO05D009375 5.9e-52 207.6 134 78.4
Nitab4.5_0000066g0140 Nicotiana tabacum HOM05D007452 ORTHO05D009375 2.2e-51 205.7 133 75.9
Oeu002255.1 Olea europaea HOM05D007452 ORTHO05D009375 4.2e-50 201.4 135 77.8
vmacro06236 Vaccinium macrocarpon HOM05D007452 ORTHO05D009375 2.7e-49 198.7 133 72.9
GSVIVG01015344001 Vitis vinifera HOM05D007452 ORTHO05D009375 1.5e-47 193.0 137 72.3
MSTRG.19570 Avicennia marina HOM05D007452 ORTHO05D009375 1.7e-46 189.5 133 73.7
Lsat_1_v5_gn_5_147400 Lactuca sativa HOM05D007452 ORTHO05D009375 2.2e-46 189.1 133 73.7
QL02p043240 Quercus lobata HOM05D007452 ORTHO05D009375 2.8e-46 188.7 129 75.2
QL02p044487 Quercus lobata HOM05D007452 ORTHO05D009375 2.8e-46 188.7 129 75.2
Prupe.7G224900 Prunus persica HOM05D007452 ORTHO05D009375 3.7e-46 188.3 137 70.8
Peaxi162Scf00539g00066 Petunia axillaris HOM05D007452 ORTHO05D009375 1.1e-45 186.8 113 81.4
HanXRQChr10g0318511 Helianthus annuus HOM05D007452 ORTHO05D009375 1.4e-45 186.4 131 71.8
MD15G1192300 Malus domestica HOM05D007452 ORTHO05D009375 2.4e-45 185.7 134 69.4
Haze_25788 Corylus avellana HOM05D007452 ORTHO05D009375 3.1e-45 185.3 137 70.1
FvH4_1g05720 Fragaria vesca HOM05D007452 ORTHO05D009375 3.1e-45 185.3 133 70.7
FAN28G0080 Fragaria x ananassa HOM05D007452 ORTHO05D009375 4.1e-45 184.9 133 69.9
COL.COLO4_34802 Corchorus olitorius HOM05D007452 ORTHO05D009375 5.3e-45 184.5 135 71.9
Migut.J01126 Erythranthe guttata HOM05D007452 ORTHO05D009375 5.3e-45 184.5 133 72.2
MD02G1057900 Malus domestica HOM05D007452 ORTHO05D009375 5.3e-45 184.5 137 67.9
PGR102G0901 Punica granatum HOM05D007452 ORTHO05D009375 5.3e-45 184.5 134 69.4
DCAR_012055 Daucus carota HOM05D007452 ORTHO05D009375 7.0e-45 184.1 133 71.4
FAN19G0597 Fragaria x ananassa HOM05D007452 ORTHO05D009375 1.2e-44 183.3 133 69.9
FAN26G0145 Fragaria x ananassa HOM05D007452 ORTHO05D009375 1.2e-44 183.3 133 69.2
FAN26G2311 Fragaria x ananassa HOM05D007452 ORTHO05D009375 1.5e-44 183.0 133 68.4
SalBow6G2888 Salvia bowleyana HOM05D007452 ORTHO05D009375 1.5e-44 183.0 133 72.2
Dinv41642 Davidia involucrata HOM05D007452 ORTHO05D009375 2.6e-44 182.2 125 72.8
PSO210G5570 Papaver somniferum HOM05D007452 ORTHO05D009375 2.6e-44 182.2 134 68.7
RcHm_v2.0_Chr2g0091331 Rosa chinensis HOM05D007452 ORTHO05D009375 2.6e-44 182.2 132 71.2
Thecc.09G105200 Theobroma cacao HOM05D007452 ORTHO05D009375 3.5e-44 181.8 135 69.6
TWI34G0936 Tripterygium wilfordii HOM05D007452 ORTHO05D009375 3.5e-44 181.8 137 70.1
unitig_899.g15033 Utricularia gibba HOM05D007452 ORTHO05D009375 2.2e-43 179.1 133 69.2
Rhsim03G0239200 Rhododendron simsii HOM05D007452 ORTHO05D009375 2.9e-43 178.7 118 75.4
HPP92_008140 Vanilla planifolia HOM05D007452 ORTHO05D009375 1.4e-42 176.4 131 64.9
AUR62021449 Chenopodium quinoa HOM05D007452 ORTHO05D009375 2.5e-42 175.6 132 69.7
Ah.09g230860 Amaranthus hybridus HOM05D007452 ORTHO05D009375 4.2e-42 174.9 136 68.4
Gohir.D06G063500 Gossypium hirsutum HOM05D007452 ORTHO05D009375 7.2e-42 174.1 135 66.7
Atru.chr7.1416 Acer truncatum HOM05D007452 ORTHO05D009375 9.4e-42 173.7 142 65.5
SGA_v2.0_scaffold10G05148 Striga asiatica HOM05D007452 ORTHO05D009375 1.2e-41 173.3 130 70.0
Aqoxy7G01521 Aquilegia oxysepala HOM05D007452 ORTHO05D009375 2.1e-41 172.6 127 69.3
MELO3C024705.2 Cucumis melo HOM05D007452 ORTHO05D009375 2.1e-41 172.6 131 67.9
TAR636G3481 Trochodendron aralioides HOM05D007452 ORTHO05D009375 2.7e-41 172.2 135 63.7
Cfa003221 Carpinus fangiana HOM05D007452 ORTHO05D009375 3.6e-41 171.8 123 71.5
Ciclev10009852m.g Citrus clementina HOM05D007452 ORTHO05D009375 3.6e-41 171.8 135 65.9
Sabra18G0072700 Salix brachista HOM05D007452 ORTHO05D009375 4.7e-41 171.4 137 66.4
Sopen08g027980 Solanum pennellii HOM05D007452 ORTHO05D009375 6.1e-41 171.0 127 70.1
CARHR193330 Cardamine hirsuta HOM05D007452 ORTHO05D009375 1.0e-40 170.2 137 63.5
Potri.018G084400 Populus trichocarpa HOM05D007452 ORTHO05D009375 1.4e-40 169.9 138 64.5
Nn2g11650 Nelumbo nucifera HOM05D007452 ORTHO05D009375 2.3e-40 169.1 135 64.4
BcaC03g13689 Brassica carinata HOM05D007452 ORTHO05D009375 3.9e-40 168.3 136 61.8
BNapus_Darmor_BZH_scaffold_38p02290 Brassica napus HOM05D007452 ORTHO05D009375 3.9e-40 168.3 136 61.8
A02p05660 Brassica napus HOM05D007452 ORTHO05D009375 5.2e-40 167.9 141 60.3
Sed0023851 Sechium edule HOM05D007452 ORTHO05D009375 6.7e-40 167.5 131 67.2
Duzib187G0798 Durio zibethinus HOM05D007452 ORTHO05D009375 8.8e-40 167.2 121 70.2
BraA02t05518Z Brassica rapa HOM05D007452 ORTHO05D009375 1.1e-39 166.8 140 60.0
AT5G19570 Arabidopsis thaliana HOM05D007452 ORTHO05D009375 1.5e-39 166.4 138 62.3
BcaB05g23392 Brassica carinata HOM05D007452 ORTHO05D009375 2.0e-39 166.0 140 58.6
THA.LOC104799068 Tarenaya hassleriana HOM05D007452 ORTHO05D009375 4.4e-39 164.9 135 65.2
THA.LOC104808980 Tarenaya hassleriana HOM05D007452 ORTHO05D009375 4.4e-39 164.9 135 65.2
Phvul.002G311100 Phaseolus vulgaris HOM05D007452 ORTHO05D009375 5.7e-39 164.5 131 62.6
Glyma.08G035800 Glycine max HOM05D007452 ORTHO05D009375 7.4e-39 164.1 131 63.4
AL6G31080 Arabidopsis lyrata HOM05D007452 ORTHO05D009375 9.7e-39 163.7 139 60.4
CiPaw.04G161200 Carya illinoinensis HOM05D007452 ORTHO05D009375 2.2e-38 162.5 130 65.4
Gorai.010G074100 Gossypium raimondii HOM05D007452 ORTHO05D009375 2.2e-38 162.5 123 67.5
Thhalv10014912m.g Eutrema salsugineum HOM05D007452 ORTHO05D009375 2.8e-38 162.2 138 60.9
Medtr8g102920 Medicago truncatula HOM05D007452 ORTHO05D009375 6.3e-38 161.0 131 61.1
Aa31LG5G13720 Aethionema arabicum HOM05D007452 ORTHO05D009375 8.2e-38 160.6 117 66.7
Ca_17318_v3 Cicer arietinum L. HOM05D007452 ORTHO05D009375 8.2e-38 160.6 133 60.2
ATR0315G055 Amborella trichopoda HOM05D007452 ORTHO05D009375 2.4e-37 159.1 127 63.8
Eucgr.C01281 Eucalyptus grandis HOM05D007452 ORTHO05D009375 2.4e-37 159.1 124 68.5
Gohir.A06G065000 Gossypium hirsutum HOM05D007452 ORTHO05D009375 1.2e-36 156.8 123 65.0
Psat7g014560 Pisum sativum HOM05D007452 ORTHO05D009375 2.0e-36 156.0 133 58.6
Sc08g0007740 Simmondsia chinensis HOM05D007452 ORTHO05D009375 3.5e-36 155.2 135 61.5
Carub.0006s1792 Capsella rubella HOM05D007452 ORTHO05D009375 5.9e-36 154.5 139 58.3
ClCG06G008870 Citrullus lanatus HOM05D007452 ORTHO05D009375 7.7e-36 154.1 114 69.3
Manes.03G024500 Manihot esculenta HOM05D007452 ORTHO05D009375 1.0e-35 153.7 121 63.6
BolC2t06971H Brassica oleracea HOM05D007452 ORTHO05D009375 1.3e-35 153.3 130 60.0
Lalb_Chr05g0223071 Lupinus albus HOM05D007452 ORTHO05D009375 8.5e-35 150.6 119 61.3
Glyma.05G228800 Glycine max HOM05D007452 ORTHO05D009375 1.9e-34 149.4 117 64.1
Os05g0188300 Oryza sativa ssp. japonica HOM05D007452 ORTHO05D009375 4.2e-34 148.3 131 58.0
HanXRQChr03g0087651 Helianthus annuus HOM05D007452 ORTHO05D009375 5.5e-34 147.9 117 65.0
EL10Ac8g18425 Beta vulgaris HOM05D007452 ORTHO05D009375 1.2e-33 146.7 107 68.2
CDE02G1573 Ceratophyllum demersum HOM05D007452 ORTHO05D009375 1.2e-33 146.7 130 57.7
CSS0004194 Camellia sinensis var. sinensis HOM05D007452 ORTHO05D009375 1.4e-32 143.3 123 61.0
MBI04_g14927_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 1.4e-32 143.3 112 65.2
Zm00001eb089090 Zea mays HOM05D007452 ORTHO05D009375 2.0e-31 139.4 129 55.0
CiPaw.08G085300 Carya illinoinensis HOM05D007452 ORTHO05D009375 1.7e-30 136.3 124 59.7
HanXRQChr02g0047631 Helianthus annuus HOM05D007452 ORTHO05D009375 1.7e-30 136.3 112 65.2
SEGI_20837 Sequoiadendron giganteum HOM05D007452 ORTHO05D009375 1.6e-28 129.8 134 52.2
CsaV3_1G020810 Cucumis sativus L. HOM05D007452 ORTHO05D009375 2.0e-28 129.4 99 65.7
Cfa001992 Carpinus fangiana HOM05D007452 ORTHO05D009375 6.5e-27 124.4 93 66.7
SMO119G0523 Selaginella moellendorffii HOM05D007452 ORTHO05D009375 2.0e-23 112.8 124 47.6
Pp3c5_13600 Physcomitrium patens HOM05D007452 ORTHO05D009375 6.3e-22 107.8 128 46.1
Mapoly0005s0019 Marchantia polymorpha HOM05D007452 ORTHO05D009375 1.2e-20 103.6 130 43.1
AagrBONN_evm.TU.Sc2ySwM_117.3226 Anthoceros agrestis HOM05D007452 ORTHO05D009375 7.2e-18 94.4 130 46.9
MBI12_g37480_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 2.1e-09 66.2 52 65.4
MBI05_g24448_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 2.2e-06 56.2 70 52.9


User provided reference genes

Program Settings