Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g09940 Coffea canephora HOM05D005514 ORTHO05D006563 2.3e-39 165.2 93 100.0
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 1.3e-18 96.3 96 59.4
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 2.3e-18 95.5 90 60.0
Lsat_1_v5_gn_5_102961 Lactuca sativa HOM05D005514 ORTHO05D006563 2.5e-17 92.0 72 68.1
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 4.3e-17 91.3 86 60.5
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 1.1e-15 86.7 92 52.2
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 3.1e-15 85.1 72 68.1
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 3.1e-15 85.1 72 68.1
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 5.2e-15 84.3 71 67.6
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 2.6e-14 82.0 71 66.2
Oeu064594.1 Olea europaea HOM05D005514 ORTHO05D006563 2.6e-14 82.0 77 62.3
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 4.4e-14 81.3 71 64.8
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 4.4e-14 81.3 86 58.1
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 9.9e-14 80.1 72 63.9
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 2.9e-13 78.6 67 64.2
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 2.9e-13 78.6 72 72.2
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 1.4e-12 76.3 101 53.5
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 1.4e-12 76.3 71 69.0
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 1.9e-12 75.9 72 63.9
COL.COLO4_34822 Corchorus olitorius HOM05D005514 ORTHO05D006563 3.2e-12 75.1 89 69.7
MD15G1181500 Malus domestica HOM05D005514 ORTHO05D006563 3.2e-12 75.1 77 57.1
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 5.4e-12 74.3 77 59.7
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 1.6e-11 72.8 68 66.2
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 7.8e-11 70.5 72 58.3
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 1.0e-10 70.1 72 55.6
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 1.0e-10 70.1 76 57.9
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 1.3e-10 69.7 74 58.1
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 2.3e-10 68.9 72 56.9
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 2.3e-10 68.9 72 56.9
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 2.3e-10 68.9 72 56.9
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 3.0e-10 68.6 71 62.0
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 3.0e-10 68.6 78 51.3
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 3.9e-10 68.2 76 56.6
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 5.1e-10 67.8 62 59.7
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 5.1e-10 67.8 77 55.8
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 5.1e-10 67.8 71 59.2
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 6.6e-10 67.4 77 63.6
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 6.6e-10 67.4 71 66.2
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 8.7e-10 67.0 72 61.1
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 8.7e-10 67.0 71 62.0
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 1.1e-09 66.6 72 65.3
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 1.5e-09 66.2 75 56.0
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 1.5e-09 66.2 71 49.3
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 1.9e-09 65.9 76 56.6
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 3.3e-09 65.1 73 56.2
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 3.3e-09 65.1 79 59.5
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 4.3e-09 64.7 72 52.8
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 4.3e-09 64.7 71 52.1
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 4.3e-09 64.7 74 54.1
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 4.3e-09 64.7 72 55.6
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 5.6e-09 64.3 70 54.3
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 5.6e-09 64.3 68 52.9
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 5.6e-09 64.3 78 53.8
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 7.3e-09 63.9 71 62.0
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 2.1e-08 62.4 94 44.7
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 3.6e-08 61.6 68 55.9
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 6.2e-08 60.8 72 50.0
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 8.1e-08 60.5 71 60.6
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 4.0e-07 58.2 70 54.3
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 5.3e-07 57.8 72 47.2
RcHm_v2.0_Chr2g0088791 Rosa chinensis HOM05D005514 ORTHO05D006563 5.3e-07 57.8 44 68.2
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 6.9e-07 57.4 72 48.6
Lalb_Chr14g0371631 Lupinus albus HOM05D005514 ORTHO05D006563 3.4e-06 55.1 81 44.4
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 4.4e-06 54.7 72 55.6
Dinv36657 Davidia involucrata HOM05D005514 ORTHO05D006563 4.4e-06 54.7 27 92.6
Lalb_Chr24g0397411 Lupinus albus HOM05D005514 ORTHO05D006563 4.4e-06 54.7 81 42.0
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 5.8e-06 54.3 72 44.4


User provided reference genes

Program Settings