Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 1.1e-42 176.4 99 100.0
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 1.8e-21 105.9 100 65.0
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 8.3e-19 97.1 95 64.2
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 4.1e-18 94.7 98 59.2
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 1.6e-17 92.8 96 60.4
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 2.0e-17 92.4 90 62.2
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 4.6e-17 91.3 95 58.9
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 6.0e-17 90.9 98 57.1
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 1.7e-16 89.4 96 63.5
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 1.7e-16 89.4 104 54.8
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 1.7e-16 89.4 98 57.1
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 2.3e-16 89.0 101 56.4
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 3.9e-16 88.2 104 57.7
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 5.0e-16 87.8 95 60.0
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 8.6e-16 87.0 99 56.6
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 8.6e-16 87.0 98 59.2
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 8.6e-16 87.0 103 58.3
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 1.1e-15 86.7 97 61.9
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 1.1e-15 86.7 95 61.1
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 1.5e-15 86.3 98 57.1
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 3.3e-15 85.1 103 57.3
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 4.3e-15 84.7 99 55.6
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 5.6e-15 84.3 108 55.6
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 5.6e-15 84.3 108 55.6
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 5.6e-15 84.3 98 55.1
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 5.6e-15 84.3 99 55.6
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 7.3e-15 84.0 96 56.2
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 9.5e-15 83.6 94 55.3
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 1.2e-14 83.2 96 55.2
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 1.2e-14 83.2 96 53.1
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 1.2e-14 83.2 94 55.3
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 1.2e-14 83.2 94 58.5
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 1.6e-14 82.8 90 58.9
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 2.1e-14 82.4 96 55.2
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 2.8e-14 82.0 96 57.3
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 2.8e-14 82.0 98 53.1
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 2.8e-14 82.0 104 52.9
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 3.6e-14 81.6 101 56.4
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 3.6e-14 81.6 104 56.7
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 4.7e-14 81.3 102 53.9
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 4.7e-14 81.3 96 54.2
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 6.2e-14 80.9 98 53.1
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 1.1e-13 80.1 100 55.0
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 1.4e-13 79.7 101 55.4
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 1.4e-13 79.7 93 61.3
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.8e-13 79.3 97 55.7
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 1.8e-13 79.3 100 56.0
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 2.3e-13 79.0 101 55.4
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 2.3e-13 79.0 99 50.5
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 2.3e-13 79.0 104 53.8
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 3.1e-13 78.6 96 53.1
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 3.1e-13 78.6 99 54.5
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 4.0e-13 78.2 97 54.6
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 5.2e-13 77.8 93 57.0
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 6.8e-13 77.4 99 54.5
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 8.9e-13 77.0 94 54.3
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 1.2e-12 76.6 97 51.5
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 1.5e-12 76.3 101 56.4
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 2.6e-12 75.5 97 52.6
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 2.6e-12 75.5 66 63.6
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 3.4e-12 75.1 100 57.0
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 3.4e-12 75.1 97 53.6
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 4.4e-12 74.7 96 49.0
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 5.8e-12 74.3 95 51.6
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 7.5e-12 73.9 114 50.9
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 9.9e-12 73.6 90 51.1
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 1.3e-11 73.2 97 51.5
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 1.7e-11 72.8 101 49.5
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 2.9e-11 72.0 97 50.5
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 2.9e-11 72.0 56 69.6
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 2.9e-11 72.0 92 51.1
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 6.4e-11 70.9 96 51.0
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 6.4e-11 70.9 95 49.5
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 6.4e-11 70.9 104 50.0
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 8.3e-11 70.5 89 51.7
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 8.3e-11 70.5 96 52.1
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 1.4e-10 69.7 98 46.9
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 1.4e-10 69.7 89 50.6
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 1.9e-10 69.3 97 49.5
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 2.4e-10 68.9 98 46.9
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 2.4e-10 68.9 98 46.9
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 3.2e-10 68.6 87 50.6
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 7.1e-10 67.4 43 79.1
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 1.2e-09 66.6 98 44.9
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 1.2e-09 66.6 98 44.9
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 2.1e-09 65.9 97 49.5
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 2.1e-09 65.9 96 51.0
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 3.5e-09 65.1 97 50.5
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 3.5e-09 65.1 97 50.5
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 7.8e-09 63.9 86 50.0
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 1.3e-08 63.2 102 50.0
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 2.3e-08 62.4 90 48.9
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 3.0e-08 62.0 104 51.0
Os02g0273900 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 3.9e-08 61.6 55 56.4
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 6.6e-08 60.8 85 50.6
Gorai.001G006300 Gossypium raimondii HOM05D007491 ORTHO05D009489 6.6e-08 60.8 97 49.5
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 8.6e-08 60.5 94 48.9
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 5.6e-07 57.8 99 39.4
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 7.3e-07 57.4 98 42.9
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 9.5e-07 57.0 66 45.5
Ah.16g106040 Amaranthus hybridus HOM05D007491 ORTHO05D009489 1.6e-06 56.2 90 46.7
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 1.6e-06 56.2 101 41.6
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 2.1e-06 55.8 95 42.1
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 2.1e-06 55.8 87 48.3
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 2.1e-06 55.8 95 42.1
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 2.8e-06 55.5 95 44.2
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 2.8e-06 55.5 95 44.2
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 2.8e-06 55.5 68 48.5
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 2.8e-06 55.5 100 44.0
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 2.8e-06 55.5 101 42.6
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 3.6e-06 55.1 68 48.5
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 3.6e-06 55.1 48 54.2
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 4.7e-06 54.7 48 54.2
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 6.2e-06 54.3 64 45.3
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 6.2e-06 54.3 74 45.9
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 8.1e-06 53.9 98 39.8
EL10Ac2g04054 Beta vulgaris HOM05D007491 ORTHO05D009489 8.1e-06 53.9 89 46.1
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 8.1e-06 53.9 48 54.2
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 8.1e-06 53.9 99 44.4
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 8.1e-06 53.9 88 44.3
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 8.1e-06 53.9 99 41.4
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 8.1e-06 53.9 93 39.8


User provided reference genes

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