Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g09630 Coffea canephora HOM05D007950 ORTHO05D009951 5.4e-27 123.6 64 100.0
GSVIVG01015395001 Vitis vinifera HOM05D007950 ORTHO05D009951 3.3e-16 87.8 61 72.1
FvH4_1g04841 Fragaria vesca HOM05D007950 ORTHO05D009951 4.7e-15 84.0 61 67.2
FAN19G2230 Fragaria x ananassa HOM05D007950 ORTHO05D009951 4.7e-15 84.0 61 67.2
CSS0015996 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 6.2e-15 83.6 61 67.2
TAR636G2963 Trochodendron aralioides HOM05D007950 ORTHO05D009951 8.0e-15 83.2 61 63.9
CiPaw.02G150700 Carya illinoinensis HOM05D007950 ORTHO05D009951 1.0e-14 82.8 61 67.2
Eucgr.C01044 Eucalyptus grandis HOM05D007950 ORTHO05D009951 1.4e-14 82.4 61 67.2
Potri.001G181701 Populus trichocarpa HOM05D007950 ORTHO05D009951 1.4e-14 82.4 62 62.9
Actinidia20354 Actinidia chinensis HOM05D007950 ORTHO05D009951 1.8e-14 82.0 64 60.9
PGR102G0372 Punica granatum HOM05D007950 ORTHO05D009951 1.8e-14 82.0 61 63.9
FAN26G3407 Fragaria x ananassa HOM05D007950 ORTHO05D009951 2.3e-14 81.6 61 65.6
Nn8g39199 Nelumbo nucifera HOM05D007950 ORTHO05D009951 2.3e-14 81.6 61 63.9
RcHm_v2.0_Chr2g0090511 Rosa chinensis HOM05D007950 ORTHO05D009951 2.3e-14 81.6 61 63.9
Eucgr.J02984 Eucalyptus grandis HOM05D007950 ORTHO05D009951 3.1e-14 81.3 59 66.1
FAN23G0617 Fragaria x ananassa HOM05D007950 ORTHO05D009951 3.1e-14 81.3 61 65.6
QL05p023317 Quercus lobata HOM05D007950 ORTHO05D009951 3.1e-14 81.3 61 63.9
vmacro20696 Vaccinium macrocarpon HOM05D007950 ORTHO05D009951 3.1e-14 81.3 61 62.3
Thecc.09G111000 Theobroma cacao HOM05D007950 ORTHO05D009951 4.0e-14 80.9 61 63.9
MD02G1047700 Malus domestica HOM05D007950 ORTHO05D009951 5.2e-14 80.5 61 63.9
MD15G1186200 Malus domestica HOM05D007950 ORTHO05D009951 6.8e-14 80.1 61 62.3
Manes.16G116501 Manihot esculenta HOM05D007950 ORTHO05D009951 1.2e-13 79.3 61 60.7
Thecc.06G089600 Theobroma cacao HOM05D007950 ORTHO05D009951 1.2e-13 79.3 61 63.9
Gohir.D06G060600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.5e-13 79.0 64 59.4
Ciclev10010772m.g Citrus clementina HOM05D007950 ORTHO05D009951 2.0e-13 78.6 61 60.7
Gohir.A06G062300 Gossypium hirsutum HOM05D007950 ORTHO05D009951 2.0e-13 78.6 64 57.8
Prupe.7G230500 Prunus persica HOM05D007950 ORTHO05D009951 2.0e-13 78.6 58 63.8
CsaV3_1G030490 Cucumis sativus L. HOM05D007950 ORTHO05D009951 4.4e-13 77.4 61 57.4
Potri.003G054001 Populus trichocarpa HOM05D007950 ORTHO05D009951 4.4e-13 77.4 62 62.9
ClCG06G008510 Citrullus lanatus HOM05D007950 ORTHO05D009951 5.8e-13 77.0 61 57.4
Gorai.010G070600 Gossypium raimondii HOM05D007950 ORTHO05D009951 5.8e-13 77.0 64 57.8
QL02p085472 Quercus lobata HOM05D007950 ORTHO05D009951 5.8e-13 77.0 61 59.0
CSS0048253 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 1.7e-12 75.5 62 61.3
CiPaw.03G232500 Carya illinoinensis HOM05D007950 ORTHO05D009951 2.2e-12 75.1 65 55.4
Nn2g11757 Nelumbo nucifera HOM05D007950 ORTHO05D009951 2.9e-12 74.7 60 60.0
Gohir.D05G129500 Gossypium hirsutum HOM05D007950 ORTHO05D009951 6.4e-12 73.6 61 59.0
Gohir.D03G063400 Gossypium hirsutum HOM05D007950 ORTHO05D009951 8.3e-12 73.2 61 62.3
Gorai.002G059800 Gossypium raimondii HOM05D007950 ORTHO05D009951 8.3e-12 73.2 61 62.3
Gohir.A05G130600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.1e-11 72.8 61 59.0
CSS0032282 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 1.4e-11 72.4 61 59.0
CiPaw.04G164400 Carya illinoinensis HOM05D007950 ORTHO05D009951 1.4e-11 72.4 58 60.3
Lj3g0016273 Lotus japonicus HOM05D007950 ORTHO05D009951 1.9e-11 72.0 62 56.5
Sc10g0007380 Simmondsia chinensis HOM05D007950 ORTHO05D009951 1.9e-11 72.0 61 55.7
ATR0980G014 Amborella trichopoda HOM05D007950 ORTHO05D009951 3.2e-11 71.2 61 54.1
Gohir.1Z049586 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.2e-11 71.2 61 60.7
Phvul.003G020900 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 3.2e-11 71.2 61 55.7
arahy.Tifrunner.gnm1.ann1.7G47EE Arachis hypogaea HOM05D007950 ORTHO05D009951 7.0e-11 70.1 61 55.7
arahy.Tifrunner.gnm1.ann1.U6R6BR Arachis hypogaea HOM05D007950 ORTHO05D009951 7.0e-11 70.1 61 55.7
Manes.11G045700 Manihot esculenta HOM05D007950 ORTHO05D009951 7.0e-11 70.1 61 57.4
Medtr4g012610 Medicago truncatula HOM05D007950 ORTHO05D009951 1.6e-10 68.9 62 51.6
Psat7g251240 Pisum sativum HOM05D007950 ORTHO05D009951 2.0e-10 68.6 62 51.6
Glyma.09G123700 Glycine max HOM05D007950 ORTHO05D009951 2.7e-10 68.2 59 55.9
Medtr4g012580 Medicago truncatula HOM05D007950 ORTHO05D009951 3.5e-10 67.8 62 51.6
TPR.G24171 Trifolium pratense HOM05D007950 ORTHO05D009951 6.0e-10 67.0 62 51.6
arahy.Tifrunner.gnm1.ann1.6Z76EK Arachis hypogaea HOM05D007950 ORTHO05D009951 7.8e-10 66.6 64 51.6
TPR.G35274 Trifolium pratense HOM05D007950 ORTHO05D009951 7.8e-10 66.6 62 48.4
Medtr6g086645 Medicago truncatula HOM05D007950 ORTHO05D009951 1.3e-09 65.9 61 50.8
Prupe.3G070100 Prunus persica HOM05D007950 ORTHO05D009951 1.3e-09 65.9 65 58.5
CDE06G0019 Ceratophyllum demersum HOM05D007950 ORTHO05D009951 3.0e-09 64.7 62 50.0
Psat1g042280 Pisum sativum HOM05D007950 ORTHO05D009951 3.9e-09 64.3 61 49.2
Haze_16407 Corylus avellana HOM05D007950 ORTHO05D009951 5.0e-09 63.9 61 52.5
Haze_16408 Corylus avellana HOM05D007950 ORTHO05D009951 5.0e-09 63.9 61 52.5
Cc04_g03310 Coffea canephora HOM05D007950 ORTHO05D009951 6.6e-09 63.5 61 50.8
Glyma.08G206200 Glycine max HOM05D007950 ORTHO05D009951 6.6e-09 63.5 62 50.0
Lalb_Chr04g0262731 Lupinus albus HOM05D007950 ORTHO05D009951 6.6e-09 63.5 62 46.8
Manes.03G020101 Manihot esculenta HOM05D007950 ORTHO05D009951 1.1e-08 62.8 61 52.5
SalBow2G2396 Salvia bowleyana HOM05D007950 ORTHO05D009951 1.1e-08 62.8 49 61.2
Dinv36624 Davidia involucrata HOM05D007950 ORTHO05D009951 1.5e-08 62.4 44 72.7
FAN05G0591 Fragaria x ananassa HOM05D007950 ORTHO05D009951 7.3e-08 60.1 64 53.1
FAN14G2438 Fragaria x ananassa HOM05D007950 ORTHO05D009951 1.2e-07 59.3 64 53.1
Glyma.07G005901 Glycine max HOM05D000325 ORTHO05D002025 1.2e-07 59.3 59 49.2
Lsat_1_v5_gn_5_103401 Lactuca sativa HOM05D007950 ORTHO05D009951 1.2e-07 59.3 61 49.2
Sc08g0007460 Simmondsia chinensis HOM05D007950 ORTHO05D009951 1.2e-07 59.3 62 48.4
Migut.D01581 Erythranthe guttata HOM05D007950 ORTHO05D009951 2.1e-07 58.5 62 46.8
TPR.G8534 Trifolium pratense HOM05D007950 ORTHO05D009951 3.1e-06 54.7 62 43.5
Thhalv10012203m.g Eutrema salsugineum HOM05D007950 ORTHO05D009951 5.2e-06 53.9 65 41.5
Sed0000041 Sechium edule HOM05D007950 ORTHO05D009951 5.2e-06 53.9 57 43.9


User provided reference genes

Program Settings