Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g09330 Coffea canephora HOM05D008584 ORTHO05D010813 1.7e-58 229.2 120 100.0
CANSAT56G1052 Cannabis sativa HOM05D008584 ORTHO05D010813 5.2e-15 84.7 55 69.1
FAN28G0880 Fragaria x ananassa HOM05D008584 ORTHO05D010813 8.8e-15 84.0 68 61.8
CiPaw.04G167100 Carya illinoinensis HOM05D008584 ORTHO05D010813 1.3e-13 80.1 59 62.7
MD02G1062300 Malus domestica HOM05D008584 ORTHO05D010813 2.8e-13 79.0 61 63.9
Potri.018G072101 Populus trichocarpa HOM05D008584 ORTHO05D010813 1.4e-12 76.6 60 60.0
RcHm_v2.0_Chr2g0091061 Rosa chinensis HOM05D008584 ORTHO05D010813 3.1e-12 75.5 59 64.4
Manes.03G068582 Manihot esculenta HOM05D008584 ORTHO05D010813 5.4e-12 74.7 61 54.1
Manes.03G068566 Manihot esculenta HOM05D008584 ORTHO05D010813 7.0e-12 74.3 61 54.1
Nn8g39267 Nelumbo nucifera HOM05D008584 ORTHO05D010813 9.1e-12 73.9 62 59.7
Nn2g11826 Nelumbo nucifera HOM05D008584 ORTHO05D010813 2.0e-11 72.8 57 63.2
CAN.G1710.8 Capsicum annuum HOM05D008584 ORTHO05D010813 4.5e-11 71.6 59 57.6
CARHR218960 Cardamine hirsuta HOM05D008584 ORTHO05D010813 4.5e-11 71.6 50 62.0
Prupe.7G227100 Prunus persica HOM05D008584 ORTHO05D010813 4.5e-11 71.6 46 69.6
C08p08150 Brassica napus HOM05D008584 ORTHO05D010813 7.7e-11 70.9 49 61.2
BolC8t47667H Brassica oleracea HOM05D008584 ORTHO05D010813 7.7e-11 70.9 49 61.2
CsaV3_2G002450 Cucumis sativus L. HOM05D008584 ORTHO05D010813 7.7e-11 70.9 62 53.2
A08p06820 Brassica napus HOM05D008584 ORTHO05D010813 1.0e-10 70.5 50 62.0
BraA08t32700Z Brassica rapa HOM05D008584 ORTHO05D010813 1.0e-10 70.5 50 62.0
Os05g0179100 Oryza sativa ssp. japonica HOM05D008584 ORTHO05D010813 1.7e-10 69.7 59 55.9
AL9U10260 Arabidopsis lyrata HOM05D008584 ORTHO05D010813 2.9e-10 68.9 44 65.9
Thecc.09G114800 Theobroma cacao HOM05D008584 ORTHO05D010813 2.9e-10 68.9 64 56.2
AT4G13395 Arabidopsis thaliana HOM05D008584 ORTHO05D010813 5.0e-10 68.2 54 57.4
Duzib168G0012 Durio zibethinus HOM05D008584 ORTHO05D010813 5.0e-10 68.2 41 73.2
Zm00001eb282970 Zea mays HOM05D008584 ORTHO05D010813 5.0e-10 68.2 46 65.2
ClCG11G002630 Citrullus lanatus HOM05D008584 ORTHO05D010813 6.6e-10 67.8 62 56.5
HPP92_000677 Vanilla planifolia HOM05D008584 ORTHO05D010813 3.3e-09 65.5 58 55.2
Gohir.D07G004000 Gossypium hirsutum HOM05D008584 ORTHO05D010813 5.5e-09 64.7 55 56.4
Gohir.A05G021200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 7.2e-09 64.3 41 68.3
Gohir.D05G022600 Gossypium hirsutum HOM05D008584 ORTHO05D010813 7.2e-09 64.3 41 68.3
Phvul.011G012500 Phaseolus vulgaris HOM05D008584 ORTHO05D010813 7.2e-09 64.3 41 65.9
Carub.0007s2917 Capsella rubella HOM05D008584 ORTHO05D010813 1.2e-08 63.5 51 58.8
CSS0042146 Camellia sinensis var. sinensis HOM05D008584 ORTHO05D010813 1.6e-08 63.2 50 54.0
Sed0002148 Sechium edule HOM05D008584 ORTHO05D010813 2.8e-08 62.4 53 56.6
Lsat_1_v5_gn_5_100260 Lactuca sativa HOM05D008584 ORTHO05D010813 3.6e-08 62.0 50 58.0
CsaV3_1G030850 Cucumis sativus L. HOM05D008584 ORTHO05D010813 4.7e-08 61.6 40 67.5
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 5.2e-07 58.2 76 38.2
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 5.2e-07 58.2 67 38.8
PSO135G0377 Papaver somniferum HOM05D001415 ORTHO05D001075 6.8e-07 57.8 48 50.0
Nn2g15804 Nelumbo nucifera HOM05D008584 ORTHO05D010813 8.9e-07 57.4 44 59.1
Nn2g15810 Nelumbo nucifera HOM05D008584 ORTHO05D010813 8.9e-07 57.4 44 59.1
HPP92_005548 Vanilla planifolia HOM05D008584 ORTHO05D010813 1.2e-06 57.0 58 50.0
Zm00001eb122380 Zea mays HOM05D008584 ORTHO05D010813 1.2e-06 57.0 62 50.0
ATR0626G034 Amborella trichopoda HOM05D001415 ORTHO05D001075 1.5e-06 56.6 55 49.1
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 1.5e-06 56.6 63 44.4
Nn1g07145 Nelumbo nucifera HOM05D008941 ORTHO05D010842 1.5e-06 56.6 46 52.2
MELO3C021616.2 Cucumis melo HOM05D001415 ORTHO05D001075 2.6e-06 55.8 42 52.4
CsaV3_5G026780 Cucumis sativus L. HOM05D001415 ORTHO05D001075 2.6e-06 55.8 42 52.4
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 2.6e-06 55.8 40 52.5
Aqoxy7G04200 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 3.4e-06 55.5 35 62.9
Gohir.D10G050300 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.4e-06 55.1 36 61.1
Gorai.011G053800 Gossypium raimondii HOM05D001415 ORTHO05D001075 4.4e-06 55.1 36 61.1
Lsat_1_v5_gn_2_118460 Lactuca sativa HOM05D001415 ORTHO05D001075 4.4e-06 55.1 62 43.5
Sed0008951 Sechium edule HOM05D001415 ORTHO05D001075 4.4e-06 55.1 37 56.8
MD01G1136300 Malus domestica HOM05D001415 ORTHO05D001075 5.7e-06 54.7 39 53.8
Gohir.A05G348600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 7.5e-06 54.3 37 54.1
Gohir.D04G063900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 7.5e-06 54.3 37 54.1
Gorai.012G071500 Gossypium raimondii HOM05D001415 ORTHO05D001075 7.5e-06 54.3 37 54.1
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 7.5e-06 54.3 42 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1140 Anthoceros agrestis HOM05D008584 ORTHO05D010813 9.8e-06 53.9 47 53.2
Gohir.A13G196900 Gossypium hirsutum HOM05D008584 ORTHO05D010813 9.8e-06 53.9 31 71.0
Gohir.D13G202200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 9.8e-06 53.9 31 71.0
Gorai.013G231100 Gossypium raimondii HOM05D008584 ORTHO05D010813 9.8e-06 53.9 31 71.0
vmacro22125 Vaccinium macrocarpon HOM05D008584 ORTHO05D010813 9.8e-06 53.9 37 62.2


User provided reference genes

Program Settings