Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g09230 Coffea canephora HOM05D006393 ORTHO05D008088 3.2e-125 451.8 236 100.0
Ciclev10008889m.g Citrus clementina HOM05D006393 ORTHO05D008088 5.3e-104 381.3 236 81.8
CSS0031330 Camellia sinensis var. sinensis HOM05D006393 ORTHO05D008088 8.4e-102 374.0 236 80.9
vmacro20677 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 3.2e-101 372.1 236 78.8
Hma1.2p1_0018F.1_g013070 Hydrangea macrophylla HOM05D006393 ORTHO05D008088 9.3e-101 370.5 236 80.9
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 2.7e-100 369.0 236 80.5
Rhsim01G0090600 Rhododendron simsii HOM05D006393 ORTHO05D008088 3.5e-100 368.6 236 79.7
MSTRG.1197 Avicennia marina HOM05D006393 ORTHO05D008088 1.0e-99 367.1 236 78.4
QL02p086364 Quercus lobata HOM05D006393 ORTHO05D008088 1.3e-99 366.7 235 77.4
Atru.chr7.1280 Acer truncatum HOM05D006393 ORTHO05D008088 2.3e-99 365.9 236 78.0
CiPaw.03G236400 Carya illinoinensis HOM05D006393 ORTHO05D008088 8.7e-99 364.0 236 78.4
arahy.Tifrunner.gnm1.ann1.3AE437 Arachis hypogaea HOM05D006393 ORTHO05D008088 2.5e-98 362.5 236 77.5
FvH4_1g04221 Fragaria vesca HOM05D006393 ORTHO05D008088 2.5e-98 362.5 236 77.5
Prupe.7G235100 Prunus persica HOM05D006393 ORTHO05D008088 2.5e-98 362.5 236 78.0
RcHm_v2.0_Chr2g0089771 Rosa chinensis HOM05D006393 ORTHO05D008088 7.4e-98 360.9 236 77.5
CAN.G1665.6 Capsicum annuum HOM05D006393 ORTHO05D008088 9.6e-98 360.5 236 78.0
arahy.Tifrunner.gnm1.ann1.RZM4QH Arachis hypogaea HOM05D006393 ORTHO05D008088 1.3e-97 360.1 236 77.1
Cfa003299 Carpinus fangiana HOM05D006393 ORTHO05D008088 1.3e-97 360.1 236 79.2
Cpa.g.sc23.161 Carica papaya HOM05D006393 ORTHO05D008088 2.8e-97 359.0 236 78.4
Nitab4.5_0002551g0020 Nicotiana tabacum HOM05D006393 ORTHO05D008088 3.7e-97 358.6 236 77.1
Lalb_Chr13g0302251 Lupinus albus HOM05D006393 ORTHO05D008088 6.2e-97 357.8 236 76.7
Sopen10g030590 Solanum pennellii HOM05D006393 ORTHO05D008088 6.2e-97 357.8 236 77.1
Thecc.09G116800 Theobroma cacao HOM05D006393 ORTHO05D008088 8.1e-97 357.5 236 76.7
GSVIVG01015453001 Vitis vinifera HOM05D006393 ORTHO05D008088 8.1e-97 357.5 236 77.1
Haze_25669 Corylus avellana HOM05D006393 ORTHO05D008088 1.8e-96 356.3 236 78.4
Migut.C00826 Erythranthe guttata HOM05D006393 ORTHO05D008088 6.9e-96 354.4 236 74.2
Potri.018G073000 Populus trichocarpa HOM05D006393 ORTHO05D008088 9.0e-96 354.0 236 77.1
TWI34G1546 Tripterygium wilfordii HOM05D006393 ORTHO05D008088 9.0e-96 354.0 236 75.4
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 2.6e-95 352.4 236 75.8
MD02G1061500 Malus domestica HOM05D006393 ORTHO05D008088 2.6e-95 352.4 236 75.4
Solyc10g079970.2 Solanum lycopersicum HOM05D006393 ORTHO05D008088 3.4e-95 352.1 236 75.4
Sed0023374 Sechium edule HOM05D006393 ORTHO05D008088 4.5e-95 351.7 236 74.2
HanXRQChr03g0062141 Helianthus annuus HOM05D006393 ORTHO05D008088 1.0e-94 350.5 236 77.5
Nitab4.5_0010615g0010 Nicotiana tabacum HOM05D006393 ORTHO05D008088 1.0e-94 350.5 236 75.8
SGA_v2.0_scaffold92G28235 Striga asiatica HOM05D006393 ORTHO05D008088 1.0e-94 350.5 236 76.7
unitig_37.g13035 Utricularia gibba HOM05D006393 ORTHO05D008088 1.3e-94 350.1 236 75.0
DCAR_010438 Daucus carota HOM05D006393 ORTHO05D008088 1.7e-94 349.7 236 75.8
PGR102G0276 Punica granatum HOM05D006393 ORTHO05D008088 2.2e-94 349.4 236 75.4
PGSC0003DMG401029823 Solanum tuberosum HOM05D006393 ORTHO05D008088 2.9e-94 349.0 236 75.4
Carub.0006s1830 Capsella rubella HOM05D006393 ORTHO05D008088 4.9e-94 348.2 236 74.2
Duzib168G1441 Durio zibethinus HOM05D006393 ORTHO05D008088 4.9e-94 348.2 236 75.4
MBI04_g35350_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 4.9e-94 348.2 236 74.2
AL6G31460 Arabidopsis lyrata HOM05D006393 ORTHO05D008088 1.4e-93 346.7 236 74.2
Manes.16G064200 Manihot esculenta HOM05D006393 ORTHO05D008088 1.4e-93 346.7 236 74.2
MELO3C025307.2 Cucumis melo HOM05D006393 ORTHO05D008088 2.5e-93 345.9 236 73.3
AT5G19930 Arabidopsis thaliana HOM05D006393 ORTHO05D008088 3.2e-93 345.5 236 74.6
PSO782G0281 Papaver somniferum HOM05D006393 ORTHO05D008088 3.2e-93 345.5 236 72.9
ClCG06G010490 Citrullus lanatus HOM05D006393 ORTHO05D008088 4.2e-93 345.1 237 74.3
Sp6g24450 Schrenkiella parvula HOM05D006393 ORTHO05D008088 5.5e-93 344.7 236 73.7
Gorai.010G068300 Gossypium raimondii HOM05D006393 ORTHO05D008088 9.3e-93 344.0 236 74.6
Lj4g0026371 Lotus japonicus HOM05D006393 ORTHO05D008088 9.3e-93 344.0 236 75.4
Gohir.D06G058100 Gossypium hirsutum HOM05D006393 ORTHO05D008088 2.7e-92 342.4 236 74.2
CsaV3_1G030940 Cucumis sativus L. HOM05D006393 ORTHO05D008088 4.6e-92 341.7 236 72.9
AUR62033415 Chenopodium quinoa HOM05D006393 ORTHO05D008088 6.0e-92 341.3 236 71.6
Aqoxy7G01879 Aquilegia oxysepala HOM05D006393 ORTHO05D008088 7.9e-92 340.9 235 74.5
Nn8g39292 Nelumbo nucifera HOM05D006393 ORTHO05D008088 7.9e-92 340.9 236 74.2
A10p19800 Brassica napus HOM05D006393 ORTHO05D008088 1.8e-91 339.7 236 73.7
BraA10t44056Z Brassica rapa HOM05D006393 ORTHO05D008088 1.8e-91 339.7 236 73.3
BcaC04g19399 Brassica carinata HOM05D006393 ORTHO05D008088 2.3e-91 339.3 236 73.7
C09p56120 Brassica napus HOM05D006393 ORTHO05D008088 2.3e-91 339.3 236 73.7
BolC9t58479H Brassica oleracea HOM05D006393 ORTHO05D008088 2.3e-91 339.3 236 73.7
Thhalv10014278m.g Eutrema salsugineum HOM05D006393 ORTHO05D008088 2.3e-91 339.3 236 73.3
Psat4g042480 Pisum sativum HOM05D006393 ORTHO05D008088 2.3e-91 339.3 236 73.3
BcaB08g36553 Brassica carinata HOM05D006393 ORTHO05D008088 3.0e-91 339.0 236 73.3
Hund09172 Selenicereus undatus HOM05D006393 ORTHO05D008088 5.1e-91 338.2 236 70.8
Ca_21724_v3 Cicer arietinum L. HOM05D006393 ORTHO05D008088 6.7e-91 337.8 236 72.9
Gohir.A06G059900 Gossypium hirsutum HOM05D006393 ORTHO05D008088 1.1e-90 337.0 236 72.9
Aa31LG9G6050 Aethionema arabicum HOM05D006393 ORTHO05D008088 2.5e-90 335.9 236 71.6
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 2.5e-90 335.9 236 70.8
Sabra18G0063700 Salix brachista HOM05D006393 ORTHO05D008088 4.3e-90 335.1 236 75.0
TPR.G26762 Trifolium pratense HOM05D006393 ORTHO05D008088 1.4e-88 330.1 236 69.9
MBI01_g13571_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 1.8e-88 329.7 237 71.3
Medtr4g112990 Medicago truncatula HOM05D006393 ORTHO05D008088 2.4e-88 329.3 236 69.5
VMungo1215G0586 Vigna mungo HOM05D006393 ORTHO05D008088 2.4e-88 329.3 236 71.2
Sc07g0007380 Simmondsia chinensis HOM05D006393 ORTHO05D008088 4.1e-88 328.6 236 71.6
Phvul.003G159300 Phaseolus vulgaris HOM05D006393 ORTHO05D008088 9.0e-88 327.4 236 70.8
EL10Ac8g18557 Beta vulgaris HOM05D006393 ORTHO05D008088 1.2e-87 327.0 236 70.3
Lj7A639G46 Lonicera japonica HOM05D006393 ORTHO05D008088 2.0e-87 326.2 270 64.8
ECA240G0151 Erigeron canadensis HOM05D006393 ORTHO05D008088 1.0e-86 323.9 221 75.1
CDE06G0973 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 1.7e-86 323.2 236 70.3
FAN23G0113 Fragaria x ananassa HOM05D006393 ORTHO05D008088 1.7e-86 323.2 236 72.0
THA.LOC104815111 Tarenaya hassleriana HOM05D006393 ORTHO05D008088 1.7e-86 323.2 237 70.9
Eucgr.C04142 Eucalyptus grandis HOM05D006393 ORTHO05D008088 2.2e-86 322.8 203 77.8
Glyma.17G120200 Glycine max HOM05D006393 ORTHO05D008088 1.4e-85 320.1 238 71.0
Os01g0507300 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 1.4e-85 320.1 236 68.6
Lsat_1_v5_gn_7_42880 Lactuca sativa HOM05D006393 ORTHO05D008088 3.5e-84 315.5 236 69.9
Oeu046267.2 Olea europaea HOM05D006393 ORTHO05D008088 1.9e-82 309.7 374 50.0
Peaxi162Scf00223g01425 Petunia axillaris HOM05D006393 ORTHO05D008088 5.7e-82 308.1 236 70.8
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 1.6e-81 306.6 193 79.8
Zm00001eb106640 Zea mays HOM05D006393 ORTHO05D008088 3.7e-81 305.4 236 65.3
Zm00001eb122440 Zea mays HOM05D006393 ORTHO05D008088 3.7e-81 305.4 236 66.1
Ah.14g081310 Amaranthus hybridus HOM05D006393 ORTHO05D008088 1.8e-80 303.1 296 58.1
HPP92_008697 Vanilla planifolia HOM05D006393 ORTHO05D008088 3.1e-80 302.4 236 66.1
CARHR192920 Cardamine hirsuta HOM05D006393 ORTHO05D008088 2.5e-77 292.7 200 73.0
SEGI_37175 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 3.2e-77 292.4 236 62.3
SalBow7G4467 Salvia bowleyana HOM05D006393 ORTHO05D008088 7.9e-76 287.7 201 73.1
HPP92_009792 Vanilla planifolia HOM05D006393 ORTHO05D008088 2.3e-75 286.2 236 60.6
Os01g0178200 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 1.5e-74 283.5 275 55.6
ATR0083G026 Amborella trichopoda HOM05D006393 ORTHO05D008088 5.7e-74 281.6 236 63.6
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 5.7e-66 255.0 236 54.7
SMO340G0297 Selaginella moellendorffii HOM05D006393 ORTHO05D008088 4.5e-63 245.4 236 54.2
Peaxi162Scf00223g01424 Petunia axillaris HOM05D006393 ORTHO05D008088 1.3e-62 243.8 191 69.1
Pp3c12_24880 Physcomitrium patens HOM05D006393 ORTHO05D008088 8.5e-62 241.1 236 52.5
Oeu027539.2 Olea europaea HOM05D006393 ORTHO05D008088 3.1e-56 222.6 237 55.3
TAR636G2166 Trochodendron aralioides HOM05D006393 ORTHO05D008088 1.0e-51 207.6 143 74.1
PRCOL_00002470 Prasinoderma coloniale HOM05D006393 ORTHO05D008088 5.0e-46 188.7 225 48.9
Cre17.g726350 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 5.5e-45 185.3 280 40.7
SEGI_23420 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 2.6e-42 176.4 180 52.2
Psat6g218400 Pisum sativum HOM05D006393 ORTHO05D008088 6.6e-38 161.8 125 72.0
CDE07G1479 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 3.0e-35 152.9 112 64.3
SEGI_36873 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 7.5e-34 148.3 180 49.4
MCO12G460 Micromonas commoda HOM05D006393 ORTHO05D008088 1.7e-33 147.1 158 52.5
Glyma.05G012000 Glycine max HOM05D006393 ORTHO05D008088 8.3e-33 144.8 116 70.7
Psat5g214680 Pisum sativum HOM05D006393 ORTHO05D008088 8.0e-28 128.3 95 69.5
Cre02.g118200 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 2.3e-27 126.7 304 32.9
Zm00001eb342450 Zea mays HOM05D006393 ORTHO05D008088 3.3e-21 106.3 162 42.6
Eucgr.L03082 Eucalyptus grandis HOM05D006393 ORTHO05D008088 8.1e-20 101.7 76 60.5
SEGI_10855 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 8.9e-19 98.2 136 45.6
vmacro16552 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 2.2e-09 67.0 144 38.2
SEGI_30446 Sequoiadendron giganteum HOM05D006393 ORTHO05D000979 3.7e-09 66.2 57 59.6
SEGI_14370 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.9e-08 63.9 57 56.1
Eucgr.E03680 Eucalyptus grandis HOM05D006393 ORTHO05D008088 6.0e-07 58.9 47 63.8


User provided reference genes

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